RNA–Protein interactions for RNA: ENST00000481231.5

SMARCE1-210, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 3

Gene SMARCE1, Length 695 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-210ENST00000481231 NISCHQ9Y2I1 1504 aa24.21■■□□□ 1.47
SMARCE1-210ENST00000481231 ABCC9O60706 1549 aa22.7■■□□□ 1.22
SMARCE1-210ENST00000481231 CCDC180Q9P1Z9 1646 aa21.95■■□□□ 1.1
SMARCE1-210ENST00000481231 DNAJC5BQ9UF47 199 aa21.88■■□□□ 1.09
SMARCE1-210ENST00000481231 RB1CC1Q8TDY2 1594 aa21.23■□□□□ 0.99
SMARCE1-210ENST00000481231 PABPN1Q86U42 306 aaKnown RBP eCLIP21.05■□□□□ 0.96
SMARCE1-210ENST00000481231 NACADO15069 1562 aa20.92■□□□□ 0.94
SMARCE1-210ENST00000481231 DCAF8L2P0C7V8 631 aa20.76■□□□□ 0.91
SMARCE1-210ENST00000481231 UNC13AQ9UPW8 1703 aa20.75■□□□□ 0.91
SMARCE1-210ENST00000481231 BICRAQ9NZM4 1560 aa20.69■□□□□ 0.9
SMARCE1-210ENST00000481231 DNAJC5Q9H3Z4 198 aa20.49■□□□□ 0.87
SMARCE1-210ENST00000481231 CECR2Q9BXF3 1484 aa20.49■□□□□ 0.87
SMARCE1-210ENST00000481231 CC2D2AQ9P2K1 1620 aa20.43■□□□□ 0.86
SMARCE1-210ENST00000481231 MYO15BQ96JP2 1530 aa20.38■□□□□ 0.85
SMARCE1-210ENST00000481231 SHROOM4Q9ULL8 1493 aa20.25■□□□□ 0.83
SMARCE1-210ENST00000481231 EIF4G1Q04637 1599 aaKnown RBP20.23■□□□□ 0.83
SMARCE1-210ENST00000481231 SCRIBQ14160 1630 aa20.07■□□□□ 0.8
SMARCE1-210ENST00000481231 ZCCHC6Q5VYS8 1495 aaKnown RBP19.95■□□□□ 0.78
SMARCE1-210ENST00000481231 DCAF1Q9Y4B6 1507 aa19.9■□□□□ 0.78
SMARCE1-210ENST00000481231 CUX2O14529 1486 aa19.76■□□□□ 0.75
SMARCE1-210ENST00000481231 ERCC6Q03468 1493 aa19.62■□□□□ 0.73
SMARCE1-210ENST00000481231 TRIM41Q8WV44 630 aa19.41■□□□□ 0.7
SMARCE1-210ENST00000481231 NCAPD3P42695 1498 aa19.34■□□□□ 0.69
SMARCE1-210ENST00000481231 NESP48681 1621 aa19.33■□□□□ 0.69
SMARCE1-210ENST00000481231 THOC2Q8NI27 1593 aaKnown RBP19.23■□□□□ 0.67
SMARCE1-210ENST00000481231 ATAD2BQ9ULI0 1458 aa19.22■□□□□ 0.67
SMARCE1-210ENST00000481231 HMGXB3Q12766 1538 aa19.14■□□□□ 0.65
SMARCE1-210ENST00000481231 SMARCA2P51531 1590 aa19.12■□□□□ 0.65
SMARCE1-210ENST00000481231 SMARCA4P51532 1647 aa19.03■□□□□ 0.64
SMARCE1-210ENST00000481231 BAZ1BQ9UIG0 1483 aaKnown RBP19■□□□□ 0.63
SMARCE1-210ENST00000481231 KIF21AQ7Z4S6 1674 aa19■□□□□ 0.63
SMARCE1-210ENST00000481231 LAMC3Q9Y6N6 1575 aa18.99■□□□□ 0.63
SMARCE1-210ENST00000481231 PDS5BQ9NTI5 1447 aa18.91■□□□□ 0.62
SMARCE1-210ENST00000481231 BAZ1AQ9NRL2 1556 aaPredicted RBP18.85■□□□□ 0.61
SMARCE1-210ENST00000481231 MRC2Q9UBG0 1479 aa18.83■□□□□ 0.6
SMARCE1-210ENST00000481231 PEG3Q9GZU2 1588 aa18.81■□□□□ 0.6
SMARCE1-210ENST00000481231 WDR62O43379 1518 aa18.79■□□□□ 0.6
SMARCE1-210ENST00000481231 OSCARQ8IYS5 282 aa18.74■□□□□ 0.59
SMARCE1-210ENST00000481231 CADPSQ9ULU8 1353 aa18.73■□□□□ 0.59
SMARCE1-210ENST00000481231 MROH2BQ7Z745 1585 aa18.69■□□□□ 0.58
SMARCE1-210ENST00000481231 CEP164Q9UPV0 1460 aa18.62■□□□□ 0.57
SMARCE1-210ENST00000481231 RIMBP3CA6NJZ7 1639 aa18.61■□□□□ 0.57
SMARCE1-210ENST00000481231 RIMBP3BA6NNM3 1639 aa18.61■□□□□ 0.57
SMARCE1-210ENST00000481231 RIMBP3Q9UFD9 1639 aa18.61■□□□□ 0.57
SMARCE1-210ENST00000481231 FANCD2Q9BXW9 1451 aa18.55■□□□□ 0.56
SMARCE1-210ENST00000481231 ARHGEF11O15085 1522 aa18.5■□□□□ 0.55
SMARCE1-210ENST00000481231 URB2Q14146 1524 aaKnown RBP18.46■□□□□ 0.55
SMARCE1-210ENST00000481231 WIZO95785 1651 aa18.42■□□□□ 0.54
SMARCE1-210ENST00000481231 TRHP20396 242 aaPredicted RBP18.41■□□□□ 0.54
SMARCE1-210ENST00000481231 CYB5RLQ6IPT4 315 aa18.39■□□□□ 0.53
SMARCE1-210ENST00000481231 CFTRP13569 1480 aa18.39■□□□□ 0.53
SMARCE1-210ENST00000481231 ZNF608Q9ULD9 1512 aaPredicted RBP18.35■□□□□ 0.53
SMARCE1-210ENST00000481231 AEBP2Q6ZN18 517 aaPredicted RBP18.32■□□□□ 0.52
SMARCE1-210ENST00000481231 ARAP1Q96P48 1450 aa18.29■□□□□ 0.52
SMARCE1-210ENST00000481231 IFT140Q96RY7 1462 aa18.26■□□□□ 0.51
SMARCE1-210ENST00000481231 EIF4G3O43432 1585 aaKnown RBP18.2■□□□□ 0.5
SMARCE1-210ENST00000481231 CHD1O14646 1710 aa18.15■□□□□ 0.5
SMARCE1-210ENST00000481231 TOP2AP11388 1531 aaKnown RBP18.13■□□□□ 0.49
SMARCE1-210ENST00000481231 TOPBP1Q92547 1522 aa18.13■□□□□ 0.49
SMARCE1-210ENST00000481231 RSF1Q96T23 1441 aaPredicted RBP18.12■□□□□ 0.49
SMARCE1-210ENST00000481231 FBLN2P98095 1184 aa18.1■□□□□ 0.49
SMARCE1-210ENST00000481231 AQRO60306 1485 aaKnown RBP eCLIP18.09■□□□□ 0.495e-8■■■□□ 18.8
SMARCE1-210ENST00000481231 PRDM2Q13029 1718 aa18.08■□□□□ 0.48
SMARCE1-210ENST00000481231 TARBP1Q13395 1621 aaKnown RBP18■□□□□ 0.47
SMARCE1-210ENST00000481231 DNMBPQ6XZF7 1577 aa17.98■□□□□ 0.47
SMARCE1-210ENST00000481231 CLASP1Q7Z460 1538 aa17.95■□□□□ 0.46
SMARCE1-210ENST00000481231 ABCC8Q09428 1581 aa17.95■□□□□ 0.46
SMARCE1-210ENST00000481231 CCDC88BA6NC98 1476 aa17.94■□□□□ 0.46
SMARCE1-210ENST00000481231 POLA1P09884 1462 aaPredicted RBP17.91■□□□□ 0.46
SMARCE1-210ENST00000481231 SNAPC4Q5SXM2 1469 aa17.89■□□□□ 0.45
SMARCE1-210ENST00000481231 RAD54L2Q9Y4B4 1467 aa17.88■□□□□ 0.45
SMARCE1-210ENST00000481231 TDRD9Q8NDG6 1382 aaKnown RBP17.88■□□□□ 0.45
SMARCE1-210ENST00000481231 SYNJ1O43426 1573 aa17.84■□□□□ 0.45
SMARCE1-210ENST00000481231 CHMP7Q8WUX9 453 aaPredicted RBP17.82■□□□□ 0.44
SMARCE1-210ENST00000481231 GAPVD1Q14C86 1478 aa17.81■□□□□ 0.44
SMARCE1-210ENST00000481231 SOGA1O94964 1423 aa17.79■□□□□ 0.44
SMARCE1-210ENST00000481231 MAGI1Q96QZ7 1491 aaPredicted RBP17.76■□□□□ 0.43
SMARCE1-210ENST00000481231 SYNJ2O15056 1496 aa17.73■□□□□ 0.43
SMARCE1-210ENST00000481231 FGD5Q6ZNL6 1462 aa17.71■□□□□ 0.43
SMARCE1-210ENST00000481231 GRIN2BQ13224 1484 aa17.7■□□□□ 0.42
SMARCE1-210ENST00000481231 WDR97A6NE52 1622 aa17.69■□□□□ 0.42
SMARCE1-210ENST00000481231 ERCC6L2Q5T890 1561 aa17.67■□□□□ 0.42
SMARCE1-210ENST00000481231 ILDR1Q86SU0 546 aaPredicted RBP17.66■□□□□ 0.42
SMARCE1-210ENST00000481231 CUX1P39880 1505 aa17.59■□□□□ 0.41
SMARCE1-210ENST00000481231 PBRM1Q86U86 1689 aa17.58■□□□□ 0.41
SMARCE1-210ENST00000481231 KIF13AQ9H1H9 1805 aa17.55■□□□□ 0.4
SMARCE1-210ENST00000481231 CEP170Q5SW79 1584 aa17.53■□□□□ 0.4
SMARCE1-210ENST00000481231 KDM4FA0A1W2PPD8 638 aa17.51■□□□□ 0.39
SMARCE1-210ENST00000481231 GRIN2AQ12879 1464 aa17.5■□□□□ 0.39
SMARCE1-210ENST00000481231 ABCA5Q8WWZ7 1642 aa17.48■□□□□ 0.39
SMARCE1-210ENST00000481231 NUP160Q12769 1436 aa17.46■□□□□ 0.39
SMARCE1-210ENST00000481231 SHROOM2Q13796 1616 aa17.43■□□□□ 0.38
SMARCE1-210ENST00000481231 ABCA10Q8WWZ4 1543 aa17.43■□□□□ 0.38
SMARCE1-210ENST00000481231 FAM69CQ0P6D2 419 aa17.42■□□□□ 0.38
SMARCE1-210ENST00000481231 ADAMTS12P58397 1594 aa17.41■□□□□ 0.38
SMARCE1-210ENST00000481231 ABCC10Q5T3U5 1492 aa17.4■□□□□ 0.38
SMARCE1-210ENST00000481231 KDM6BO15054 1643 aa17.36■□□□□ 0.37
SMARCE1-210ENST00000481231 PRG4Q92954 1404 aaPredicted RBP17.36■□□□□ 0.37
SMARCE1-210ENST00000481231 DIP2BQ9P265 1576 aa17.36■□□□□ 0.37
SMARCE1-210ENST00000481231 MAPKBP1O60336 1514 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms