RNA–Protein interactions for RNA: ENST00000481057.1

CBX3-206, Transcript of chromobox 3, humanhuman

TSL 2

Gene CBX3, Length 860 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-206ENST00000481057 SUB1P53999 127 aaKnown RBP eCLIP4.03□□□□□ -1.762e-102■■■■■ 192.9
CBX3-206ENST00000481057 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.1□□□□□ -0.637e-6■■■■■ 74.5
CBX3-206ENST00000481057 ILF3Q12906 894 aaKnown RBP eCLIP5.8□□□□□ -1.489e-9■■■■■ 29.8
CBX3-206ENST00000481057 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.5■□□□□ 0.711e-10■■■■□ 26.3
CBX3-206ENST00000481057 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP8.83□□□□□ -18e-7■■■■□ 22.4
CBX3-206ENST00000481057 AQRO60306 1485 aaKnown RBP eCLIP12.53□□□□□ -0.42e-6■■■□□ 18.3
CBX3-206ENST00000481057 HNRNPCP07910 306 aaKnown RBP eCLIP6.98□□□□□ -1.299e-6■■■□□ 17.7
CBX3-206ENST00000481057 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP5.82□□□□□ -1.482e-9■■■□□ 17.5
CBX3-206ENST00000481057 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.06■□□□□ 06e-7■■■□□ 16.1
CBX3-206ENST00000481057 NOLC1Q14978 699 aaKnown RBP eCLIP8.21□□□□□ -1.16e-7■■■□□ 15.8
CBX3-206ENST00000481057 SND1Q7KZF4 910 aaKnown RBP eCLIP10.79□□□□□ -0.685e-6■■■□□ 15.1
CBX3-206ENST00000481057 ZNF622Q969S3 477 aaKnown RBP eCLIP8.78□□□□□ -12e-21■■■□□ 14.9
CBX3-206ENST00000481057 LARP4Q71RC2 724 aaKnown RBP eCLIP8.15□□□□□ -1.15e-13■■□□□ 14.4
CBX3-206ENST00000481057 PABPC4Q13310 644 aaKnown RBP eCLIP8.71□□□□□ -1.021e-28■■□□□ 12.4
CBX3-206ENST00000481057 PUM1Q14671 1186 aaKnown RBP eCLIP8.06□□□□□ -1.121e-14■□□□□ 10.8
CBX3-206ENST00000481057 KHSRPQ92945 711 aaKnown RBP eCLIP14.05□□□□□ -0.169e-6■□□□□ 10.6
CBX3-206ENST00000481057 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.3□□□□□ -0.65e-7■□□□□ 10.5
CBX3-206ENST00000481057 CSTF2P33240 577 aaKnown RBP eCLIP6.56□□□□□ -1.361e-6■□□□□ 10.5
CBX3-206ENST00000481057 TARDBPQ13148 414 aaKnown RBP eCLIP7.76□□□□□ -1.175e-12■□□□□ 9.5
CBX3-206ENST00000481057 PPIGQ13427 754 aaKnown RBP eCLIP7.86□□□□□ -1.156e-10■□□□□ 9.5
CBX3-206ENST00000481057 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP5.44□□□□□ -1.544e-9■□□□□ 8.8
CBX3-206ENST00000481057 LIN28BQ6ZN17 250 aaKnown RBP eCLIP7.36□□□□□ -1.232e-6■□□□□ 8.7
CBX3-206ENST00000481057 RPS3P23396 243 aaKnown RBP eCLIP4.97□□□□□ -1.615e-7■□□□□ 8.4
CBX3-206ENST00000481057 FXR2P51116 673 aaKnown RBP eCLIP16.45■□□□□ 0.224e-11■□□□□ 8.2
CBX3-206ENST00000481057 MTPAPQ9NVV4 582 aaKnown RBP eCLIP6.6□□□□□ -1.353e-9■□□□□ 8
Retrieved 25 of 25 RNA–protein pairs in 21.5 ms