RNA–Protein interactions for RNA: ENST00000480658.5

CCM2-213, Transcript of CCM2 scaffold protein, humanhuman

TSL 2

Gene CCM2, Length 1,136 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-213ENST00000480658 NISCHQ9Y2I1 1504 aa28.23■■■□□ 2.11
CCM2-213ENST00000480658 CCDC180Q9P1Z9 1646 aa25.37■■□□□ 1.65
CCM2-213ENST00000480658 ABCC9O60706 1549 aa24.87■■□□□ 1.57
CCM2-213ENST00000480658 RB1CC1Q8TDY2 1594 aa23.99■■□□□ 1.43
CCM2-213ENST00000480658 NACADO15069 1562 aa23.9■■□□□ 1.42
CCM2-213ENST00000480658 MYO15BQ96JP2 1530 aa23.72■■□□□ 1.39
CCM2-213ENST00000480658 DCAF8L2P0C7V8 631 aa23.56■■□□□ 1.36
CCM2-213ENST00000480658 ZCCHC6Q5VYS8 1495 aaKnown RBP23.48■■□□□ 1.35
CCM2-213ENST00000480658 DCAF1Q9Y4B6 1507 aa23.47■■□□□ 1.35
CCM2-213ENST00000480658 UNC13AQ9UPW8 1703 aa23.28■■□□□ 1.32
CCM2-213ENST00000480658 SHROOM4Q9ULL8 1493 aa23.16■■□□□ 1.3
CCM2-213ENST00000480658 BICRAQ9NZM4 1560 aa23.11■■□□□ 1.29
CCM2-213ENST00000480658 PABPN1Q86U42 306 aaKnown RBP eCLIP23.11■■□□□ 1.29
CCM2-213ENST00000480658 SCRIBQ14160 1630 aa22.94■■□□□ 1.26
CCM2-213ENST00000480658 DNAJC5BQ9UF47 199 aa22.93■■□□□ 1.26
CCM2-213ENST00000480658 EIF4G1Q04637 1599 aaKnown RBP22.61■■□□□ 1.21
CCM2-213ENST00000480658 CC2D2AQ9P2K1 1620 aa22.56■■□□□ 1.2
CCM2-213ENST00000480658 CECR2Q9BXF3 1484 aa22.47■■□□□ 1.19
CCM2-213ENST00000480658 SMARCA2P51531 1590 aa21.99■■□□□ 1.11
CCM2-213ENST00000480658 NCAPD3P42695 1498 aa21.99■■□□□ 1.11
CCM2-213ENST00000480658 BAZ1AQ9NRL2 1556 aaPredicted RBP21.99■■□□□ 1.11
CCM2-213ENST00000480658 SMARCA4P51532 1647 aa21.98■■□□□ 1.11
CCM2-213ENST00000480658 HMGXB3Q12766 1538 aa21.92■■□□□ 1.1
CCM2-213ENST00000480658 ATAD2BQ9ULI0 1458 aa21.9■■□□□ 1.1
CCM2-213ENST00000480658 PEG3Q9GZU2 1588 aa21.83■■□□□ 1.09
CCM2-213ENST00000480658 BAZ1BQ9UIG0 1483 aaKnown RBP21.77■■□□□ 1.07
CCM2-213ENST00000480658 MROH2BQ7Z745 1585 aa21.66■■□□□ 1.06
CCM2-213ENST00000480658 ERCC6Q03468 1493 aa21.6■■□□□ 1.05
CCM2-213ENST00000480658 CUX2O14529 1486 aa21.54■■□□□ 1.04
CCM2-213ENST00000480658 LAMC3Q9Y6N6 1575 aa21.53■■□□□ 1.04
CCM2-213ENST00000480658 WIZO95785 1651 aa21.41■■□□□ 1.02
CCM2-213ENST00000480658 NESP48681 1621 aa21.39■■□□□ 1.01
CCM2-213ENST00000480658 PDS5BQ9NTI5 1447 aa21.38■■□□□ 1.01
CCM2-213ENST00000480658 RSF1Q96T23 1441 aaPredicted RBP21.33■■□□□ 1.01
CCM2-213ENST00000480658 CADPSQ9ULU8 1353 aa21.32■■□□□ 1
CCM2-213ENST00000480658 TOP2AP11388 1531 aaKnown RBP21.29■■□□□ 1
CCM2-213ENST00000480658 THOC2Q8NI27 1593 aaKnown RBP21.27■□□□□ 0.99
CCM2-213ENST00000480658 KIF21AQ7Z4S6 1674 aa21.21■□□□□ 0.99
CCM2-213ENST00000480658 CFTRP13569 1480 aa21.14■□□□□ 0.98
CCM2-213ENST00000480658 MRC2Q9UBG0 1479 aa21.13■□□□□ 0.97
CCM2-213ENST00000480658 CEP164Q9UPV0 1460 aa21.12■□□□□ 0.97
CCM2-213ENST00000480658 WDR62O43379 1518 aa21.09■□□□□ 0.97
CCM2-213ENST00000480658 DNAJC5Q9H3Z4 198 aa21.08■□□□□ 0.97
CCM2-213ENST00000480658 FANCD2Q9BXW9 1451 aa21.06■□□□□ 0.96
CCM2-213ENST00000480658 PRDM2Q13029 1718 aa21.01■□□□□ 0.95
CCM2-213ENST00000480658 CCDC88BA6NC98 1476 aa20.94■□□□□ 0.94
CCM2-213ENST00000480658 ABCC8Q09428 1581 aa20.82■□□□□ 0.92
CCM2-213ENST00000480658 URB2Q14146 1524 aaKnown RBP20.81■□□□□ 0.92
CCM2-213ENST00000480658 IFT140Q96RY7 1462 aa20.69■□□□□ 0.9
CCM2-213ENST00000480658 DNMBPQ6XZF7 1577 aa20.69■□□□□ 0.9
CCM2-213ENST00000480658 TOPBP1Q92547 1522 aa20.68■□□□□ 0.9
CCM2-213ENST00000480658 WDR97A6NE52 1622 aa20.5■□□□□ 0.87
CCM2-213ENST00000480658 OSCARQ8IYS5 282 aa20.5■□□□□ 0.87
CCM2-213ENST00000480658 EIF4G3O43432 1585 aaKnown RBP20.49■□□□□ 0.87
CCM2-213ENST00000480658 POLA1P09884 1462 aaPredicted RBP20.49■□□□□ 0.87
CCM2-213ENST00000480658 TARBP1Q13395 1621 aaKnown RBP20.47■□□□□ 0.87
CCM2-213ENST00000480658 SUPT5HO00267 1087 aaKnown RBP20.47■□□□□ 0.87
CCM2-213ENST00000480658 ZNF608Q9ULD9 1512 aaPredicted RBP20.47■□□□□ 0.87
CCM2-213ENST00000480658 SOGA1O94964 1423 aa20.39■□□□□ 0.85
CCM2-213ENST00000480658 FGD5Q6ZNL6 1462 aa20.38■□□□□ 0.85
CCM2-213ENST00000480658 CUX1P39880 1505 aa20.37■□□□□ 0.85
CCM2-213ENST00000480658 AQRO60306 1485 aaKnown RBP eCLIP20.32■□□□□ 0.841e-6■■■■■ 33.8
CCM2-213ENST00000480658 RAD54L2Q9Y4B4 1467 aa20.3■□□□□ 0.84
CCM2-213ENST00000480658 MAGI1Q96QZ7 1491 aaPredicted RBP20.27■□□□□ 0.84
CCM2-213ENST00000480658 GRIN2BQ13224 1484 aa20.25■□□□□ 0.83
CCM2-213ENST00000480658 CHD1O14646 1710 aa20.24■□□□□ 0.83
CCM2-213ENST00000480658 TDRD9Q8NDG6 1382 aaKnown RBP20.23■□□□□ 0.83
CCM2-213ENST00000480658 ABCA10Q8WWZ4 1543 aa20.22■□□□□ 0.83
CCM2-213ENST00000480658 WRNQ14191 1432 aaPredicted RBP eCLIP20.21■□□□□ 0.83
CCM2-213ENST00000480658 TOP2BQ02880 1626 aa20.2■□□□□ 0.82
CCM2-213ENST00000480658 BIVM-ERCC5R4GMW8 1640 aa20.2■□□□□ 0.82
CCM2-213ENST00000480658 SNAPC4Q5SXM2 1469 aa20.2■□□□□ 0.82
CCM2-213ENST00000480658 GAPVD1Q14C86 1478 aa20.18■□□□□ 0.82
CCM2-213ENST00000480658 TRIM41Q8WV44 630 aa20.18■□□□□ 0.82
CCM2-213ENST00000480658 ARHGEF11O15085 1522 aa20.17■□□□□ 0.82
CCM2-213ENST00000480658 RIMBP3CA6NJZ7 1639 aa20.16■□□□□ 0.82
CCM2-213ENST00000480658 RIMBP3BA6NNM3 1639 aa20.16■□□□□ 0.82
CCM2-213ENST00000480658 RIMBP3Q9UFD9 1639 aa20.16■□□□□ 0.82
CCM2-213ENST00000480658 FBLN2P98095 1184 aa20.16■□□□□ 0.82
CCM2-213ENST00000480658 SYNJ2O15056 1496 aa20.16■□□□□ 0.82
CCM2-213ENST00000480658 SYNJ1O43426 1573 aa20.16■□□□□ 0.82
CCM2-213ENST00000480658 ABCA5Q8WWZ7 1642 aa20.16■□□□□ 0.82
CCM2-213ENST00000480658 PBRM1Q86U86 1689 aa20.16■□□□□ 0.82
CCM2-213ENST00000480658 CHMP7Q8WUX9 453 aaPredicted RBP20.13■□□□□ 0.81
CCM2-213ENST00000480658 CLASP1Q7Z460 1538 aa20.06■□□□□ 0.8
CCM2-213ENST00000480658 ERICH3Q5RHP9 1530 aa20.02■□□□□ 0.8
CCM2-213ENST00000480658 ADAMTS12P58397 1594 aa19.99■□□□□ 0.79
CCM2-213ENST00000480658 GRIN2AQ12879 1464 aa19.97■□□□□ 0.79
CCM2-213ENST00000480658 FHAD1B1AJZ9 1412 aa19.96■□□□□ 0.79
CCM2-213ENST00000480658 ARAP1Q96P48 1450 aa19.93■□□□□ 0.78
CCM2-213ENST00000480658 CYB5RLQ6IPT4 315 aa19.91■□□□□ 0.78
CCM2-213ENST00000480658 NUP160Q12769 1436 aa19.89■□□□□ 0.77
CCM2-213ENST00000480658 KIF27Q86VH2 1401 aa19.85■□□□□ 0.77
CCM2-213ENST00000480658 CEP170Q5SW79 1584 aa19.82■□□□□ 0.76
CCM2-213ENST00000480658 CUL7Q14999 1698 aa19.81■□□□□ 0.76
CCM2-213ENST00000480658 SHROOM2Q13796 1616 aa19.78■□□□□ 0.76
CCM2-213ENST00000480658 RUSC2Q8N2Y8 1516 aa19.71■□□□□ 0.75
CCM2-213ENST00000480658 IGF1RP08069 1367 aa19.68■□□□□ 0.74
CCM2-213ENST00000480658 TRHP20396 242 aaPredicted RBP19.65■□□□□ 0.74
CCM2-213ENST00000480658 KIAA0586Q9BVV6 1533 aa19.65■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms