RNA–Protein interactions for RNA: ENST00000476954.1

SMG5-204, Transcript of SMG5, nonsense mediated mRNA decay factor, humanhuman

TSL 2

Gene SMG5, Length 1,161 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG5-204ENST00000476954 NISCHQ9Y2I1 1504 aa39.9■■■■□ 3.98
SMG5-204ENST00000476954 ABCC9O60706 1549 aa37.2■■■■□ 3.55
SMG5-204ENST00000476954 CCDC180Q9P1Z9 1646 aa36.18■■■■□ 3.38
SMG5-204ENST00000476954 DNAJC5BQ9UF47 199 aa35.79■■■■□ 3.32
SMG5-204ENST00000476954 RB1CC1Q8TDY2 1594 aa34.88■■■■□ 3.17
SMG5-204ENST00000476954 PABPN1Q86U42 306 aaKnown RBP eCLIP34.5■■■■□ 3.11
SMG5-204ENST00000476954 NACADO15069 1562 aa34.4■■■■□ 3.1
SMG5-204ENST00000476954 UNC13AQ9UPW8 1703 aa34.24■■■■□ 3.07
SMG5-204ENST00000476954 DCAF8L2P0C7V8 631 aa34.14■■■■□ 3.06
SMG5-204ENST00000476954 BICRAQ9NZM4 1560 aa34.02■■■■□ 3.04
SMG5-204ENST00000476954 CECR2Q9BXF3 1484 aa33.56■■■□□ 2.96
SMG5-204ENST00000476954 MYO15BQ96JP2 1530 aa33.55■■■□□ 2.96
SMG5-204ENST00000476954 CC2D2AQ9P2K1 1620 aa33.53■■■□□ 2.96
SMG5-204ENST00000476954 DNAJC5Q9H3Z4 198 aa33.42■■■□□ 2.94
SMG5-204ENST00000476954 SHROOM4Q9ULL8 1493 aa33.24■■■□□ 2.91
SMG5-204ENST00000476954 EIF4G1Q04637 1599 aaKnown RBP33.2■■■□□ 2.91
SMG5-204ENST00000476954 SCRIBQ14160 1630 aa33.02■■■□□ 2.88
SMG5-204ENST00000476954 ZCCHC6Q5VYS8 1495 aaKnown RBP32.86■■■□□ 2.85
SMG5-204ENST00000476954 DCAF1Q9Y4B6 1507 aa32.81■■■□□ 2.84
SMG5-204ENST00000476954 CUX2O14529 1486 aa32.31■■■□□ 2.76
SMG5-204ENST00000476954 ERCC6Q03468 1493 aa32.1■■■□□ 2.73
SMG5-204ENST00000476954 NCAPD3P42695 1498 aa31.78■■■□□ 2.68
SMG5-204ENST00000476954 NESP48681 1621 aa31.72■■■□□ 2.67
SMG5-204ENST00000476954 TRIM41Q8WV44 630 aa31.64■■■□□ 2.66
SMG5-204ENST00000476954 ATAD2BQ9ULI0 1458 aa31.59■■■□□ 2.65
SMG5-204ENST00000476954 THOC2Q8NI27 1593 aaKnown RBP31.54■■■□□ 2.64
SMG5-204ENST00000476954 HMGXB3Q12766 1538 aa31.45■■■□□ 2.63
SMG5-204ENST00000476954 SMARCA2P51531 1590 aa31.4■■■□□ 2.62
SMG5-204ENST00000476954 SMARCA4P51532 1647 aa31.35■■■□□ 2.61
SMG5-204ENST00000476954 KIF21AQ7Z4S6 1674 aa31.28■■■□□ 2.6
SMG5-204ENST00000476954 BAZ1BQ9UIG0 1483 aaKnown RBP31.22■■■□□ 2.59
SMG5-204ENST00000476954 LAMC3Q9Y6N6 1575 aa31.21■■■□□ 2.59
SMG5-204ENST00000476954 PDS5BQ9NTI5 1447 aa31.03■■■□□ 2.56
SMG5-204ENST00000476954 BAZ1AQ9NRL2 1556 aaPredicted RBP30.99■■■□□ 2.55
SMG5-204ENST00000476954 PEG3Q9GZU2 1588 aa30.98■■■□□ 2.55
SMG5-204ENST00000476954 MRC2Q9UBG0 1479 aa30.88■■■□□ 2.53
SMG5-204ENST00000476954 WDR62O43379 1518 aa30.84■■■□□ 2.53
SMG5-204ENST00000476954 MROH2BQ7Z745 1585 aa30.8■■■□□ 2.52
SMG5-204ENST00000476954 CADPSQ9ULU8 1353 aa30.78■■■□□ 2.52
SMG5-204ENST00000476954 OSCARQ8IYS5 282 aa30.7■■■□□ 2.51
SMG5-204ENST00000476954 CEP164Q9UPV0 1460 aa30.56■■■□□ 2.48
SMG5-204ENST00000476954 RIMBP3CA6NJZ7 1639 aa30.51■■■□□ 2.47
SMG5-204ENST00000476954 RIMBP3BA6NNM3 1639 aa30.51■■■□□ 2.47
SMG5-204ENST00000476954 RIMBP3Q9UFD9 1639 aa30.51■■■□□ 2.47
SMG5-204ENST00000476954 FANCD2Q9BXW9 1451 aa30.46■■■□□ 2.47
SMG5-204ENST00000476954 WIZO95785 1651 aa30.41■■■□□ 2.46
SMG5-204ENST00000476954 URB2Q14146 1524 aaKnown RBP30.32■■■□□ 2.44
SMG5-204ENST00000476954 ARHGEF11O15085 1522 aa30.27■■■□□ 2.44
SMG5-204ENST00000476954 CFTRP13569 1480 aa30.24■■■□□ 2.43
SMG5-204ENST00000476954 ZNF608Q9ULD9 1512 aaPredicted RBP30.12■■■□□ 2.41
SMG5-204ENST00000476954 CYB5RLQ6IPT4 315 aa30.12■■■□□ 2.41
SMG5-204ENST00000476954 TRHP20396 242 aaPredicted RBP30.07■■■□□ 2.4
SMG5-204ENST00000476954 IFT140Q96RY7 1462 aa29.97■■■□□ 2.39
SMG5-204ENST00000476954 ARAP1Q96P48 1450 aa29.93■■■□□ 2.38
SMG5-204ENST00000476954 PRDM2Q13029 1718 aa29.9■■■□□ 2.38
SMG5-204ENST00000476954 CHD1O14646 1710 aa29.88■■■□□ 2.37
SMG5-204ENST00000476954 EIF4G3O43432 1585 aaKnown RBP29.88■■■□□ 2.37
SMG5-204ENST00000476954 TOP2AP11388 1531 aaKnown RBP29.86■■■□□ 2.37
SMG5-204ENST00000476954 AEBP2Q6ZN18 517 aaPredicted RBP29.84■■■□□ 2.37
SMG5-204ENST00000476954 TOPBP1Q92547 1522 aa29.8■■■□□ 2.36
SMG5-204ENST00000476954 RSF1Q96T23 1441 aaPredicted RBP29.77■■■□□ 2.36
SMG5-204ENST00000476954 AQRO60306 1485 aaKnown RBP eCLIP29.72■■■□□ 2.351e-7■■■□□ 16.7
SMG5-204ENST00000476954 FBLN2P98095 1184 aa29.69■■■□□ 2.34
SMG5-204ENST00000476954 TARBP1Q13395 1621 aaKnown RBP29.63■■■□□ 2.33
SMG5-204ENST00000476954 DNMBPQ6XZF7 1577 aa29.59■■■□□ 2.33
SMG5-204ENST00000476954 CCDC88BA6NC98 1476 aa29.58■■■□□ 2.33
SMG5-204ENST00000476954 ABCC8Q09428 1581 aa29.54■■■□□ 2.32
SMG5-204ENST00000476954 CLASP1Q7Z460 1538 aa29.45■■■□□ 2.31
SMG5-204ENST00000476954 POLA1P09884 1462 aaPredicted RBP29.43■■■□□ 2.3
SMG5-204ENST00000476954 RAD54L2Q9Y4B4 1467 aa29.41■■■□□ 2.3
SMG5-204ENST00000476954 TDRD9Q8NDG6 1382 aaKnown RBP29.39■■■□□ 2.29
SMG5-204ENST00000476954 SNAPC4Q5SXM2 1469 aa29.36■■■□□ 2.29
SMG5-204ENST00000476954 SYNJ1O43426 1573 aa29.3■■■□□ 2.28
SMG5-204ENST00000476954 SOGA1O94964 1423 aa29.26■■■□□ 2.27
SMG5-204ENST00000476954 CHMP7Q8WUX9 453 aaPredicted RBP29.25■■■□□ 2.27
SMG5-204ENST00000476954 GAPVD1Q14C86 1478 aa29.2■■■□□ 2.26
SMG5-204ENST00000476954 MAGI1Q96QZ7 1491 aaPredicted RBP29.17■■■□□ 2.26
SMG5-204ENST00000476954 FGD5Q6ZNL6 1462 aa29.13■■■□□ 2.25
SMG5-204ENST00000476954 WDR97A6NE52 1622 aa29.11■■■□□ 2.25
SMG5-204ENST00000476954 SYNJ2O15056 1496 aa29.1■■■□□ 2.25
SMG5-204ENST00000476954 GRIN2BQ13224 1484 aa29.09■■■□□ 2.25
SMG5-204ENST00000476954 ERCC6L2Q5T890 1561 aa29.03■■■□□ 2.24
SMG5-204ENST00000476954 PBRM1Q86U86 1689 aa28.99■■■□□ 2.23
SMG5-204ENST00000476954 CUX1P39880 1505 aa28.98■■■□□ 2.23
SMG5-204ENST00000476954 KIF13AQ9H1H9 1805 aa28.9■■■□□ 2.22
SMG5-204ENST00000476954 CEP170Q5SW79 1584 aa28.81■■■□□ 2.2
SMG5-204ENST00000476954 ABCA5Q8WWZ7 1642 aa28.78■■■□□ 2.2
SMG5-204ENST00000476954 GRIN2AQ12879 1464 aa28.74■■■□□ 2.19
SMG5-204ENST00000476954 ILDR1Q86SU0 546 aaPredicted RBP28.74■■■□□ 2.19
SMG5-204ENST00000476954 ABCA10Q8WWZ4 1543 aa28.69■■■□□ 2.18
SMG5-204ENST00000476954 SHROOM2Q13796 1616 aa28.69■■■□□ 2.18
SMG5-204ENST00000476954 NUP160Q12769 1436 aa28.67■■■□□ 2.18
SMG5-204ENST00000476954 ADAMTS12P58397 1594 aa28.63■■■□□ 2.17
SMG5-204ENST00000476954 KDM4FA0A1W2PPD8 638 aa28.63■■■□□ 2.17
SMG5-204ENST00000476954 FAM69CQ0P6D2 419 aa28.56■■■□□ 2.16
SMG5-204ENST00000476954 ABCC10Q5T3U5 1492 aa28.52■■■□□ 2.16
SMG5-204ENST00000476954 PRG4Q92954 1404 aaPredicted RBP28.5■■■□□ 2.15
SMG5-204ENST00000476954 DIP2BQ9P265 1576 aa28.46■■■□□ 2.15
SMG5-204ENST00000476954 KDM6BO15054 1643 aa28.46■■■□□ 2.15
SMG5-204ENST00000476954 FHAD1B1AJZ9 1412 aa28.45■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms