RNA–Protein interactions for RNA: ENST00000471455.1

CPSF4-211, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 5

Gene CPSF4, Length 569 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-211ENST00000471455 AEBP2Q6ZN18 517 aaPredicted RBP26.85■■□□□ 1.89
CPSF4-211ENST00000471455 CHIC1Q5VXU3 224 aa25.85■■□□□ 1.73
CPSF4-211ENST00000471455 NISCHQ9Y2I1 1504 aa22.92■■□□□ 1.26
CPSF4-211ENST00000471455 PHF23Q9BUL5 403 aaPredicted RBP22.79■■□□□ 1.24
CPSF4-211ENST00000471455 SENP3Q9H4L4 574 aaPredicted RBP22.65■■□□□ 1.22
CPSF4-211ENST00000471455 FOXD1Q16676 465 aa21.15■□□□□ 0.98
CPSF4-211ENST00000471455 PLPPR3Q6T4P5 718 aa20.78■□□□□ 0.92
CPSF4-211ENST00000471455 ABCC9O60706 1549 aa20.73■□□□□ 0.91
CPSF4-211ENST00000471455 CCDC180Q9P1Z9 1646 aa20.69■□□□□ 0.9
CPSF4-211ENST00000471455 PPP6R1Q9UPN7 881 aa20.19■□□□□ 0.82
CPSF4-211ENST00000471455 ADRA2BP18089 450 aa20.09■□□□□ 0.81
CPSF4-211ENST00000471455 PIAS4Q8N2W9 510 aaPredicted RBP19.79■□□□□ 0.76
CPSF4-211ENST00000471455 RB1CC1Q8TDY2 1594 aa19.75■□□□□ 0.75
CPSF4-211ENST00000471455 NACADO15069 1562 aa19.59■□□□□ 0.73
CPSF4-211ENST00000471455 MSH5O43196 834 aa19.48■□□□□ 0.71
CPSF4-211ENST00000471455 DNAJC5BQ9UF47 199 aa19.44■□□□□ 0.7
CPSF4-211ENST00000471455 DCAF8L2P0C7V8 631 aa19.37■□□□□ 0.69
CPSF4-211ENST00000471455 MYO15BQ96JP2 1530 aa19.3■□□□□ 0.68
CPSF4-211ENST00000471455 PABPN1Q86U42 306 aaKnown RBP eCLIP19.23■□□□□ 0.67
CPSF4-211ENST00000471455 UNC13AQ9UPW8 1703 aa19.2■□□□□ 0.66
CPSF4-211ENST00000471455 BICRAQ9NZM4 1560 aa19.08■□□□□ 0.65
CPSF4-211ENST00000471455 ZCCHC6Q5VYS8 1495 aaKnown RBP18.99■□□□□ 0.63
CPSF4-211ENST00000471455 DCAF1Q9Y4B6 1507 aa18.99■□□□□ 0.63
CPSF4-211ENST00000471455 SHROOM4Q9ULL8 1493 aa18.98■□□□□ 0.63
CPSF4-211ENST00000471455 SCRIBQ14160 1630 aa18.78■□□□□ 0.6
CPSF4-211ENST00000471455 CC2D2AQ9P2K1 1620 aa18.73■□□□□ 0.59
CPSF4-211ENST00000471455 CECR2Q9BXF3 1484 aa18.72■□□□□ 0.59
CPSF4-211ENST00000471455 EIF4G1Q04637 1599 aaKnown RBP18.68■□□□□ 0.58
CPSF4-211ENST00000471455 MAPK8IP2Q13387 824 aaPredicted RBP18.33■□□□□ 0.52
CPSF4-211ENST00000471455 POTEDQ86YR6 584 aa18.33■□□□□ 0.52
CPSF4-211ENST00000471455 PPP4R3CPQ6ZMV5 832 aa18.32■□□□□ 0.52
CPSF4-211ENST00000471455 SCAF1Q9H7N4 1312 aaKnown RBP18.18■□□□□ 0.5
CPSF4-211ENST00000471455 DMRT2Q9Y5R5 561 aa18.1■□□□□ 0.49
CPSF4-211ENST00000471455 DNAJC5Q9H3Z4 198 aa18.05■□□□□ 0.48
CPSF4-211ENST00000471455 NCAPD3P42695 1498 aa18.05■□□□□ 0.48
CPSF4-211ENST00000471455 CUX2O14529 1486 aa18■□□□□ 0.47
CPSF4-211ENST00000471455 ERCC6Q03468 1493 aa17.98■□□□□ 0.47
CPSF4-211ENST00000471455 SMARCA2P51531 1590 aa17.96■□□□□ 0.47
CPSF4-211ENST00000471455 ATAD2BQ9ULI0 1458 aa17.95■□□□□ 0.46
CPSF4-211ENST00000471455 HMGXB3Q12766 1538 aa17.93■□□□□ 0.46
CPSF4-211ENST00000471455 SMARCA4P51532 1647 aa17.92■□□□□ 0.46
CPSF4-211ENST00000471455 BAZ1AQ9NRL2 1556 aaPredicted RBP17.85■□□□□ 0.45
CPSF4-211ENST00000471455 CNKSR2Q8WXI2 1034 aa17.83■□□□□ 0.44
CPSF4-211ENST00000471455 BAZ1BQ9UIG0 1483 aaKnown RBP17.82■□□□□ 0.44
CPSF4-211ENST00000471455 PEG3Q9GZU2 1588 aa17.76■□□□□ 0.43
CPSF4-211ENST00000471455 NESP48681 1621 aa17.73■□□□□ 0.43
CPSF4-211ENST00000471455 LAMC3Q9Y6N6 1575 aa17.69■□□□□ 0.42
CPSF4-211ENST00000471455 KCNA4P22459 653 aa17.66■□□□□ 0.42
CPSF4-211ENST00000471455 THOC2Q8NI27 1593 aaKnown RBP17.63■□□□□ 0.41
CPSF4-211ENST00000471455 HOXD11P31277 338 aaPredicted RBP17.63■□□□□ 0.41
CPSF4-211ENST00000471455 NCBP3Q53F19 620 aaKnown RBP17.63■□□□□ 0.41
CPSF4-211ENST00000471455 MROH2BQ7Z745 1585 aa17.62■□□□□ 0.41
CPSF4-211ENST00000471455 PDS5BQ9NTI5 1447 aa17.61■□□□□ 0.41
CPSF4-211ENST00000471455 RNF216Q9NWF9 866 aaPredicted RBP17.57■□□□□ 0.4
CPSF4-211ENST00000471455 NPM3O75607 178 aaKnown RBP17.55■□□□□ 0.4
CPSF4-211ENST00000471455 KIF21AQ7Z4S6 1674 aa17.53■□□□□ 0.4
CPSF4-211ENST00000471455 CADPSQ9ULU8 1353 aa17.49■□□□□ 0.39
CPSF4-211ENST00000471455 MRC2Q9UBG0 1479 aa17.44■□□□□ 0.38
CPSF4-211ENST00000471455 WIZO95785 1651 aa17.4■□□□□ 0.38
CPSF4-211ENST00000471455 WDR62O43379 1518 aa17.4■□□□□ 0.38
CPSF4-211ENST00000471455 CEP164Q9UPV0 1460 aa17.36■□□□□ 0.37
CPSF4-211ENST00000471455 FANCD2Q9BXW9 1451 aa17.3■□□□□ 0.36
CPSF4-211ENST00000471455 CFTRP13569 1480 aa17.26■□□□□ 0.35
CPSF4-211ENST00000471455 TOP2AP11388 1531 aaKnown RBP17.25■□□□□ 0.35
CPSF4-211ENST00000471455 RSF1Q96T23 1441 aaPredicted RBP17.22■□□□□ 0.35
CPSF4-211ENST00000471455 TRIM41Q8WV44 630 aa17.2■□□□□ 0.34
CPSF4-211ENST00000471455 DCAF8L1A6NGE4 600 aa17.18■□□□□ 0.34
CPSF4-211ENST00000471455 URB2Q14146 1524 aaKnown RBP17.12■□□□□ 0.33
CPSF4-211ENST00000471455 PRDM2Q13029 1718 aa17.11■□□□□ 0.33
CPSF4-211ENST00000471455 OSCARQ8IYS5 282 aa17.11■□□□□ 0.33
CPSF4-211ENST00000471455 IFT140Q96RY7 1462 aa17.02■□□□□ 0.32
CPSF4-211ENST00000471455 CCDC88BA6NC98 1476 aa16.99■□□□□ 0.31
CPSF4-211ENST00000471455 ABCC8Q09428 1581 aa16.98■□□□□ 0.31
CPSF4-211ENST00000471455 TOPBP1Q92547 1522 aa16.95■□□□□ 0.3
CPSF4-211ENST00000471455 ZNF608Q9ULD9 1512 aaPredicted RBP16.91■□□□□ 0.3
CPSF4-211ENST00000471455 DNMBPQ6XZF7 1577 aa16.9■□□□□ 0.3
CPSF4-211ENST00000471455 RIMBP3CA6NJZ7 1639 aa16.88■□□□□ 0.29
CPSF4-211ENST00000471455 RIMBP3BA6NNM3 1639 aa16.88■□□□□ 0.29
CPSF4-211ENST00000471455 RIMBP3Q9UFD9 1639 aa16.88■□□□□ 0.29
CPSF4-211ENST00000471455 EIF4G3O43432 1585 aaKnown RBP16.87■□□□□ 0.29
CPSF4-211ENST00000471455 ARHGEF11O15085 1522 aa16.83■□□□□ 0.28
CPSF4-211ENST00000471455 TARBP1Q13395 1621 aaKnown RBP16.78■□□□□ 0.28
CPSF4-211ENST00000471455 POLA1P09884 1462 aaPredicted RBP16.76■□□□□ 0.27
CPSF4-211ENST00000471455 RNF39Q9H2S5 420 aa16.76■□□□□ 0.27
CPSF4-211ENST00000471455 AQRO60306 1485 aaKnown RBP eCLIP16.75■□□□□ 0.271e-8■■■■■ 102.7
CPSF4-211ENST00000471455 CHD1O14646 1710 aa16.74■□□□□ 0.27
CPSF4-211ENST00000471455 WDR97A6NE52 1622 aa16.72■□□□□ 0.27
CPSF4-211ENST00000471455 SLC4A2P04920 1241 aa16.7■□□□□ 0.26
CPSF4-211ENST00000471455 FBLN2P98095 1184 aa16.7■□□□□ 0.26
CPSF4-211ENST00000471455 SOGA1O94964 1423 aa16.69■□□□□ 0.26
CPSF4-211ENST00000471455 CYB5RLQ6IPT4 315 aa16.68■□□□□ 0.26
CPSF4-211ENST00000471455 SLC4A1APQ9BWU0 796 aaKnown RBP16.67■□□□□ 0.26
CPSF4-211ENST00000471455 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.66■□□□□ 0.265e-6■□□□□ 8.1
CPSF4-211ENST00000471455 RAD54L2Q9Y4B4 1467 aa16.66■□□□□ 0.26
CPSF4-211ENST00000471455 FGD5Q6ZNL6 1462 aa16.64■□□□□ 0.25
CPSF4-211ENST00000471455 ARAP1Q96P48 1450 aa16.64■□□□□ 0.25
CPSF4-211ENST00000471455 TDRD9Q8NDG6 1382 aaKnown RBP16.64■□□□□ 0.25
CPSF4-211ENST00000471455 SNAPC4Q5SXM2 1469 aa16.62■□□□□ 0.25
CPSF4-211ENST00000471455 MAGI1Q96QZ7 1491 aaPredicted RBP16.62■□□□□ 0.25
CPSF4-211ENST00000471455 SYNJ1O43426 1573 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 83.5 ms