RNA–Protein interactions for RNA: ENST00000470585.5

SF3A3-205, Transcript of splicing factor 3a subunit 3, humanhuman

TSL 3

Gene SF3A3, Length 704 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-205ENST00000470585 NISCHQ9Y2I1 1504 aa17.5■□□□□ 0.39
SF3A3-205ENST00000470585 AEBP2Q6ZN18 517 aaPredicted RBP17.2■□□□□ 0.34
SF3A3-205ENST00000470585 CHIC1Q5VXU3 224 aa16.03■□□□□ 0.16
SF3A3-205ENST00000470585 ABCC9O60706 1549 aa15.94■□□□□ 0.14
SF3A3-205ENST00000470585 CCDC180Q9P1Z9 1646 aa15.9■□□□□ 0.14
SF3A3-205ENST00000470585 RB1CC1Q8TDY2 1594 aa15.23■□□□□ 0.03
SF3A3-205ENST00000470585 DNAJC5BQ9UF47 199 aa15.14■□□□□ 0.01
SF3A3-205ENST00000470585 NACADO15069 1562 aa15.09■□□□□ 0.01
SF3A3-205ENST00000470585 MYO15BQ96JP2 1530 aa14.9□□□□□ -0.02
SF3A3-205ENST00000470585 UNC13AQ9UPW8 1703 aa14.77□□□□□ -0.05
SF3A3-205ENST00000470585 PABPN1Q86U42 306 aaKnown RBP eCLIP14.74□□□□□ -0.05
SF3A3-205ENST00000470585 SHROOM4Q9ULL8 1493 aa14.74□□□□□ -0.05
SF3A3-205ENST00000470585 BICRAQ9NZM4 1560 aa14.72□□□□□ -0.05
SF3A3-205ENST00000470585 SENP3Q9H4L4 574 aaPredicted RBP14.67□□□□□ -0.06
SF3A3-205ENST00000470585 DCAF8L2P0C7V8 631 aa14.65□□□□□ -0.06
SF3A3-205ENST00000470585 DCAF1Q9Y4B6 1507 aa14.57□□□□□ -0.08
SF3A3-205ENST00000470585 PHF23Q9BUL5 403 aaPredicted RBP14.5□□□□□ -0.09
SF3A3-205ENST00000470585 CECR2Q9BXF3 1484 aa14.47□□□□□ -0.09
SF3A3-205ENST00000470585 ZCCHC6Q5VYS8 1495 aaKnown RBP14.46□□□□□ -0.09
SF3A3-205ENST00000470585 CC2D2AQ9P2K1 1620 aa14.46□□□□□ -0.09
SF3A3-205ENST00000470585 EIF4G1Q04637 1599 aaKnown RBP14.39□□□□□ -0.11
SF3A3-205ENST00000470585 SCRIBQ14160 1630 aa14.27□□□□□ -0.12
SF3A3-205ENST00000470585 DNAJC5Q9H3Z4 198 aa14.24□□□□□ -0.13
SF3A3-205ENST00000470585 CUX2O14529 1486 aa14.04□□□□□ -0.16
SF3A3-205ENST00000470585 NCAPD3P42695 1498 aa13.92□□□□□ -0.18
SF3A3-205ENST00000470585 ERCC6Q03468 1493 aa13.86□□□□□ -0.19
SF3A3-205ENST00000470585 HMGXB3Q12766 1538 aa13.81□□□□□ -0.2
SF3A3-205ENST00000470585 SMARCA2P51531 1590 aa13.79□□□□□ -0.2
SF3A3-205ENST00000470585 ATAD2BQ9ULI0 1458 aa13.78□□□□□ -0.2
SF3A3-205ENST00000470585 FOXD1Q16676 465 aa13.77□□□□□ -0.21
SF3A3-205ENST00000470585 SMARCA4P51532 1647 aa13.68□□□□□ -0.22
SF3A3-205ENST00000470585 PEG3Q9GZU2 1588 aa13.66□□□□□ -0.22
SF3A3-205ENST00000470585 LAMC3Q9Y6N6 1575 aa13.65□□□□□ -0.22
SF3A3-205ENST00000470585 BAZ1AQ9NRL2 1556 aaPredicted RBP13.64□□□□□ -0.23
SF3A3-205ENST00000470585 THOC2Q8NI27 1593 aaKnown RBP13.62□□□□□ -0.23
SF3A3-205ENST00000470585 BAZ1BQ9UIG0 1483 aaKnown RBP13.62□□□□□ -0.23
SF3A3-205ENST00000470585 NESP48681 1621 aa13.61□□□□□ -0.23
SF3A3-205ENST00000470585 PDS5BQ9NTI5 1447 aa13.57□□□□□ -0.24
SF3A3-205ENST00000470585 KIF21AQ7Z4S6 1674 aa13.47□□□□□ -0.25
SF3A3-205ENST00000470585 CADPSQ9ULU8 1353 aa13.45□□□□□ -0.26
SF3A3-205ENST00000470585 MRC2Q9UBG0 1479 aa13.43□□□□□ -0.26
SF3A3-205ENST00000470585 WDR62O43379 1518 aa13.43□□□□□ -0.26
SF3A3-205ENST00000470585 MROH2BQ7Z745 1585 aa13.4□□□□□ -0.26
SF3A3-205ENST00000470585 TRIM41Q8WV44 630 aa13.34□□□□□ -0.27
SF3A3-205ENST00000470585 CEP164Q9UPV0 1460 aa13.32□□□□□ -0.28
SF3A3-205ENST00000470585 POTEDQ86YR6 584 aa13.28□□□□□ -0.28
SF3A3-205ENST00000470585 OSCARQ8IYS5 282 aa13.27□□□□□ -0.29
SF3A3-205ENST00000470585 FANCD2Q9BXW9 1451 aa13.26□□□□□ -0.29
SF3A3-205ENST00000470585 CFTRP13569 1480 aa13.25□□□□□ -0.29
SF3A3-205ENST00000470585 WIZO95785 1651 aa13.19□□□□□ -0.3
SF3A3-205ENST00000470585 URB2Q14146 1524 aaKnown RBP13.13□□□□□ -0.31
SF3A3-205ENST00000470585 TOP2AP11388 1531 aaKnown RBP13.12□□□□□ -0.31
SF3A3-205ENST00000470585 PRDM2Q13029 1718 aa13.1□□□□□ -0.31
SF3A3-205ENST00000470585 IFT140Q96RY7 1462 aa13.1□□□□□ -0.31
SF3A3-205ENST00000470585 RIMBP3CA6NJZ7 1639 aa13.08□□□□□ -0.32
SF3A3-205ENST00000470585 RIMBP3BA6NNM3 1639 aa13.08□□□□□ -0.32
SF3A3-205ENST00000470585 RIMBP3Q9UFD9 1639 aa13.08□□□□□ -0.32
SF3A3-205ENST00000470585 RSF1Q96T23 1441 aaPredicted RBP13.06□□□□□ -0.32
SF3A3-205ENST00000470585 ABCC8Q09428 1581 aa13.06□□□□□ -0.32
SF3A3-205ENST00000470585 ARHGEF11O15085 1522 aa13.05□□□□□ -0.32
SF3A3-205ENST00000470585 TOPBP1Q92547 1522 aa12.98□□□□□ -0.33
SF3A3-205ENST00000470585 ZNF608Q9ULD9 1512 aaPredicted RBP12.98□□□□□ -0.33
SF3A3-205ENST00000470585 MSH5O43196 834 aa12.96□□□□□ -0.33
SF3A3-205ENST00000470585 EIF4G3O43432 1585 aaKnown RBP12.94□□□□□ -0.34
SF3A3-205ENST00000470585 DNMBPQ6XZF7 1577 aa12.94□□□□□ -0.34
SF3A3-205ENST00000470585 CCDC88BA6NC98 1476 aa12.91□□□□□ -0.34
SF3A3-205ENST00000470585 WDR97A6NE52 1622 aa12.9□□□□□ -0.34
SF3A3-205ENST00000470585 TARBP1Q13395 1621 aaKnown RBP12.89□□□□□ -0.35
SF3A3-205ENST00000470585 ARAP1Q96P48 1450 aa12.88□□□□□ -0.35
SF3A3-205ENST00000470585 CYB5RLQ6IPT4 315 aa12.87□□□□□ -0.35
SF3A3-205ENST00000470585 CHD1O14646 1710 aa12.86□□□□□ -0.35
SF3A3-205ENST00000470585 AQRO60306 1485 aaKnown RBP eCLIP12.82□□□□□ -0.362e-7■■■■■ 35.1
SF3A3-205ENST00000470585 POLA1P09884 1462 aaPredicted RBP12.82□□□□□ -0.36
SF3A3-205ENST00000470585 TRHP20396 242 aaPredicted RBP12.8□□□□□ -0.36
SF3A3-205ENST00000470585 MAGI1Q96QZ7 1491 aaPredicted RBP12.78□□□□□ -0.36
SF3A3-205ENST00000470585 CLASP1Q7Z460 1538 aa12.78□□□□□ -0.36
SF3A3-205ENST00000470585 PIAS4Q8N2W9 510 aaPredicted RBP12.78□□□□□ -0.36
SF3A3-205ENST00000470585 SYNJ1O43426 1573 aa12.77□□□□□ -0.36
SF3A3-205ENST00000470585 SOGA1O94964 1423 aa12.75□□□□□ -0.37
SF3A3-205ENST00000470585 FBLN2P98095 1184 aa12.74□□□□□ -0.37
SF3A3-205ENST00000470585 GRIN2BQ13224 1484 aa12.72□□□□□ -0.37
SF3A3-205ENST00000470585 SNAPC4Q5SXM2 1469 aa12.72□□□□□ -0.37
SF3A3-205ENST00000470585 SYNJ2O15056 1496 aa12.72□□□□□ -0.37
SF3A3-205ENST00000470585 TDRD9Q8NDG6 1382 aaKnown RBP12.69□□□□□ -0.38
SF3A3-205ENST00000470585 CHMP7Q8WUX9 453 aaPredicted RBP12.69□□□□□ -0.38
SF3A3-205ENST00000470585 RAD54L2Q9Y4B4 1467 aa12.69□□□□□ -0.38
SF3A3-205ENST00000470585 FGD5Q6ZNL6 1462 aa12.68□□□□□ -0.38
SF3A3-205ENST00000470585 PPP6R1Q9UPN7 881 aa12.65□□□□□ -0.38
SF3A3-205ENST00000470585 GAPVD1Q14C86 1478 aa12.64□□□□□ -0.39
SF3A3-205ENST00000470585 CUX1P39880 1505 aa12.62□□□□□ -0.39
SF3A3-205ENST00000470585 ADRA2BP18089 450 aa12.6□□□□□ -0.39
SF3A3-205ENST00000470585 PLPPR3Q6T4P5 718 aa12.6□□□□□ -0.39
SF3A3-205ENST00000470585 ABCA10Q8WWZ4 1543 aa12.6□□□□□ -0.39
SF3A3-205ENST00000470585 PBRM1Q86U86 1689 aa12.59□□□□□ -0.39
SF3A3-205ENST00000470585 ABCA5Q8WWZ7 1642 aa12.58□□□□□ -0.4
SF3A3-205ENST00000470585 NUP160Q12769 1436 aa12.54□□□□□ -0.4
SF3A3-205ENST00000470585 GRIN2AQ12879 1464 aa12.53□□□□□ -0.4
SF3A3-205ENST00000470585 SHROOM2Q13796 1616 aa12.51□□□□□ -0.41
SF3A3-205ENST00000470585 CEP170Q5SW79 1584 aa12.49□□□□□ -0.41
SF3A3-205ENST00000470585 WRNQ14191 1432 aaPredicted RBP eCLIP12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 137.9 ms