RNA–Protein interactions for RNA: ENST00000470083.5

LSM2-209, Transcript of LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM2, Length 641 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM2-209ENST00000470083 NISCHQ9Y2I1 1504 aa31.01■■■□□ 2.55
LSM2-209ENST00000470083 ABCC9O60706 1549 aa28.74■■■□□ 2.19
LSM2-209ENST00000470083 CCDC180Q9P1Z9 1646 aa28.05■■■□□ 2.08
LSM2-209ENST00000470083 DNAJC5BQ9UF47 199 aa27.58■■■□□ 2.01
LSM2-209ENST00000470083 RB1CC1Q8TDY2 1594 aa27.06■■□□□ 1.92
LSM2-209ENST00000470083 NACADO15069 1562 aa26.74■■□□□ 1.87
LSM2-209ENST00000470083 PABPN1Q86U42 306 aaKnown RBP eCLIP26.67■■□□□ 1.86
LSM2-209ENST00000470083 DCAF8L2P0C7V8 631 aa26.43■■□□□ 1.82
LSM2-209ENST00000470083 UNC13AQ9UPW8 1703 aa26.31■■□□□ 1.8
LSM2-209ENST00000470083 BICRAQ9NZM4 1560 aa26.29■■□□□ 1.8
LSM2-209ENST00000470083 MYO15BQ96JP2 1530 aa26.2■■□□□ 1.79
LSM2-209ENST00000470083 CECR2Q9BXF3 1484 aa25.98■■□□□ 1.75
LSM2-209ENST00000470083 SHROOM4Q9ULL8 1493 aa25.96■■□□□ 1.75
LSM2-209ENST00000470083 CC2D2AQ9P2K1 1620 aa25.9■■□□□ 1.74
LSM2-209ENST00000470083 DNAJC5Q9H3Z4 198 aa25.83■■□□□ 1.73
LSM2-209ENST00000470083 EIF4G1Q04637 1599 aaKnown RBP25.71■■□□□ 1.71
LSM2-209ENST00000470083 DCAF1Q9Y4B6 1507 aa25.6■■□□□ 1.69
LSM2-209ENST00000470083 ZCCHC6Q5VYS8 1495 aaKnown RBP25.58■■□□□ 1.69
LSM2-209ENST00000470083 SCRIBQ14160 1630 aa25.52■■□□□ 1.68
LSM2-209ENST00000470083 CUX2O14529 1486 aa25.09■■□□□ 1.61
LSM2-209ENST00000470083 ERCC6Q03468 1493 aa24.88■■□□□ 1.57
LSM2-209ENST00000470083 NCAPD3P42695 1498 aa24.73■■□□□ 1.55
LSM2-209ENST00000470083 ATAD2BQ9ULI0 1458 aa24.54■■□□□ 1.52
LSM2-209ENST00000470083 NESP48681 1621 aa24.5■■□□□ 1.51
LSM2-209ENST00000470083 HMGXB3Q12766 1538 aa24.45■■□□□ 1.51
LSM2-209ENST00000470083 SMARCA2P51531 1590 aa24.42■■□□□ 1.5
LSM2-209ENST00000470083 TRIM41Q8WV44 630 aa24.37■■□□□ 1.49
LSM2-209ENST00000470083 THOC2Q8NI27 1593 aaKnown RBP24.37■■□□□ 1.49
LSM2-209ENST00000470083 SMARCA4P51532 1647 aa24.29■■□□□ 1.48
LSM2-209ENST00000470083 BAZ1BQ9UIG0 1483 aaKnown RBP24.26■■□□□ 1.47
LSM2-209ENST00000470083 LAMC3Q9Y6N6 1575 aa24.22■■□□□ 1.47
LSM2-209ENST00000470083 PDS5BQ9NTI5 1447 aa24.16■■□□□ 1.46
LSM2-209ENST00000470083 BAZ1AQ9NRL2 1556 aaPredicted RBP24.11■■□□□ 1.45
LSM2-209ENST00000470083 PEG3Q9GZU2 1588 aa24.1■■□□□ 1.45
LSM2-209ENST00000470083 KIF21AQ7Z4S6 1674 aa24.07■■□□□ 1.44
LSM2-209ENST00000470083 MRC2Q9UBG0 1479 aa23.96■■□□□ 1.43
LSM2-209ENST00000470083 CADPSQ9ULU8 1353 aa23.94■■□□□ 1.42
LSM2-209ENST00000470083 WDR62O43379 1518 aa23.92■■□□□ 1.42
LSM2-209ENST00000470083 MROH2BQ7Z745 1585 aa23.87■■□□□ 1.41
LSM2-209ENST00000470083 OSCARQ8IYS5 282 aa23.83■■□□□ 1.41
LSM2-209ENST00000470083 CEP164Q9UPV0 1460 aa23.73■■□□□ 1.39
LSM2-209ENST00000470083 FANCD2Q9BXW9 1451 aa23.65■■□□□ 1.38
LSM2-209ENST00000470083 CFTRP13569 1480 aa23.53■■□□□ 1.36
LSM2-209ENST00000470083 RIMBP3CA6NJZ7 1639 aa23.51■■□□□ 1.35
LSM2-209ENST00000470083 RIMBP3BA6NNM3 1639 aa23.51■■□□□ 1.35
LSM2-209ENST00000470083 RIMBP3Q9UFD9 1639 aa23.51■■□□□ 1.35
LSM2-209ENST00000470083 WIZO95785 1651 aa23.49■■□□□ 1.35
LSM2-209ENST00000470083 URB2Q14146 1524 aaKnown RBP23.49■■□□□ 1.35
LSM2-209ENST00000470083 ARHGEF11O15085 1522 aa23.43■■□□□ 1.34
LSM2-209ENST00000470083 ZNF608Q9ULD9 1512 aaPredicted RBP23.31■■□□□ 1.32
LSM2-209ENST00000470083 CYB5RLQ6IPT4 315 aa23.3■■□□□ 1.32
LSM2-209ENST00000470083 IFT140Q96RY7 1462 aa23.3■■□□□ 1.32
LSM2-209ENST00000470083 TRHP20396 242 aaPredicted RBP23.24■■□□□ 1.31
LSM2-209ENST00000470083 TOP2AP11388 1531 aaKnown RBP23.22■■□□□ 1.31
LSM2-209ENST00000470083 RSF1Q96T23 1441 aaPredicted RBP23.17■■□□□ 1.3
LSM2-209ENST00000470083 ARAP1Q96P48 1450 aa23.16■■□□□ 1.3
LSM2-209ENST00000470083 TOPBP1Q92547 1522 aa23.12■■□□□ 1.29
LSM2-209ENST00000470083 EIF4G3O43432 1585 aaKnown RBP23.1■■□□□ 1.29
LSM2-209ENST00000470083 PRDM2Q13029 1718 aa23.06■■□□□ 1.28
LSM2-209ENST00000470083 AEBP2Q6ZN18 517 aaPredicted RBP23.05■■□□□ 1.28
LSM2-209ENST00000470083 ABCC8Q09428 1581 aa23.04■■□□□ 1.28
LSM2-209ENST00000470083 AQRO60306 1485 aaKnown RBP eCLIP23.01■■□□□ 1.278e-8■■■■□ 24.4
LSM2-209ENST00000470083 CHD1O14646 1710 aa22.99■■□□□ 1.27
LSM2-209ENST00000470083 FBLN2P98095 1184 aa22.98■■□□□ 1.27
LSM2-209ENST00000470083 CCDC88BA6NC98 1476 aa22.97■■□□□ 1.27
LSM2-209ENST00000470083 DNMBPQ6XZF7 1577 aa22.96■■□□□ 1.27
LSM2-209ENST00000470083 TARBP1Q13395 1621 aaKnown RBP22.93■■□□□ 1.26
LSM2-209ENST00000470083 POLA1P09884 1462 aaPredicted RBP22.85■■□□□ 1.25
LSM2-209ENST00000470083 CLASP1Q7Z460 1538 aa22.82■■□□□ 1.24
LSM2-209ENST00000470083 TDRD9Q8NDG6 1382 aaKnown RBP22.78■■□□□ 1.24
LSM2-209ENST00000470083 SNAPC4Q5SXM2 1469 aa22.76■■□□□ 1.23
LSM2-209ENST00000470083 RAD54L2Q9Y4B4 1467 aa22.76■■□□□ 1.23
LSM2-209ENST00000470083 SOGA1O94964 1423 aa22.74■■□□□ 1.23
LSM2-209ENST00000470083 CHMP7Q8WUX9 453 aaPredicted RBP22.73■■□□□ 1.23
LSM2-209ENST00000470083 SYNJ1O43426 1573 aa22.72■■□□□ 1.23
LSM2-209ENST00000470083 MAGI1Q96QZ7 1491 aaPredicted RBP22.69■■□□□ 1.22
LSM2-209ENST00000470083 WDR97A6NE52 1622 aa22.68■■□□□ 1.22
LSM2-209ENST00000470083 GAPVD1Q14C86 1478 aa22.63■■□□□ 1.21
LSM2-209ENST00000470083 SYNJ2O15056 1496 aa22.62■■□□□ 1.21
LSM2-209ENST00000470083 GRIN2BQ13224 1484 aa22.62■■□□□ 1.21
LSM2-209ENST00000470083 FGD5Q6ZNL6 1462 aa22.6■■□□□ 1.21
LSM2-209ENST00000470083 CUX1P39880 1505 aa22.47■■□□□ 1.19
LSM2-209ENST00000470083 ERCC6L2Q5T890 1561 aa22.38■■□□□ 1.17
LSM2-209ENST00000470083 PBRM1Q86U86 1689 aa22.36■■□□□ 1.17
LSM2-209ENST00000470083 ABCA10Q8WWZ4 1543 aa22.33■■□□□ 1.17
LSM2-209ENST00000470083 GRIN2AQ12879 1464 aa22.32■■□□□ 1.16
LSM2-209ENST00000470083 ABCA5Q8WWZ7 1642 aa22.31■■□□□ 1.16
LSM2-209ENST00000470083 CEP170Q5SW79 1584 aa22.3■■□□□ 1.16
LSM2-209ENST00000470083 NUP160Q12769 1436 aa22.3■■□□□ 1.16
LSM2-209ENST00000470083 SHROOM2Q13796 1616 aa22.21■■□□□ 1.15
LSM2-209ENST00000470083 ADAMTS12P58397 1594 aa22.2■■□□□ 1.14
LSM2-209ENST00000470083 KIF13AQ9H1H9 1805 aa22.2■■□□□ 1.14
LSM2-209ENST00000470083 FHAD1B1AJZ9 1412 aa22.15■■□□□ 1.14
LSM2-209ENST00000470083 FAM69CQ0P6D2 419 aa22.14■■□□□ 1.13
LSM2-209ENST00000470083 ABCC10Q5T3U5 1492 aa22.14■■□□□ 1.13
LSM2-209ENST00000470083 CHIC1Q5VXU3 224 aa22.13■■□□□ 1.13
LSM2-209ENST00000470083 ILDR1Q86SU0 546 aaPredicted RBP22.13■■□□□ 1.13
LSM2-209ENST00000470083 WRNQ14191 1432 aaPredicted RBP eCLIP22.13■■□□□ 1.13
LSM2-209ENST00000470083 KDM4FA0A1W2PPD8 638 aa22.12■■□□□ 1.13
LSM2-209ENST00000470083 PRG4Q92954 1404 aaPredicted RBP22.12■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms