RNA–Protein interactions for RNA: ENST00000469223.5

HDAC6-217, Transcript of histone deacetylase 6, humanhuman

TSL 5

Gene HDAC6, Length 796 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-217ENST00000469223 NISCHQ9Y2I1 1504 aa33.07■■■□□ 2.89
HDAC6-217ENST00000469223 ABCC9O60706 1549 aa31.03■■■□□ 2.56
HDAC6-217ENST00000469223 CCDC180Q9P1Z9 1646 aa30.22■■■□□ 2.43
HDAC6-217ENST00000469223 DNAJC5BQ9UF47 199 aa29.79■■■□□ 2.36
HDAC6-217ENST00000469223 RB1CC1Q8TDY2 1594 aa29.13■■■□□ 2.25
HDAC6-217ENST00000469223 NACADO15069 1562 aa28.67■■■□□ 2.18
HDAC6-217ENST00000469223 UNC13AQ9UPW8 1703 aa28.66■■■□□ 2.18
HDAC6-217ENST00000469223 PABPN1Q86U42 306 aaKnown RBP eCLIP28.62■■■□□ 2.17
HDAC6-217ENST00000469223 BICRAQ9NZM4 1560 aa28.36■■■□□ 2.13
HDAC6-217ENST00000469223 DCAF8L2P0C7V8 631 aa28.17■■■□□ 2.1
HDAC6-217ENST00000469223 CECR2Q9BXF3 1484 aa28.02■■■□□ 2.08
HDAC6-217ENST00000469223 CC2D2AQ9P2K1 1620 aa28.02■■■□□ 2.08
HDAC6-217ENST00000469223 DNAJC5Q9H3Z4 198 aa28■■■□□ 2.07
HDAC6-217ENST00000469223 MYO15BQ96JP2 1530 aa27.92■■■□□ 2.06
HDAC6-217ENST00000469223 SHROOM4Q9ULL8 1493 aa27.81■■■□□ 2.04
HDAC6-217ENST00000469223 EIF4G1Q04637 1599 aaKnown RBP27.73■■■□□ 2.03
HDAC6-217ENST00000469223 SCRIBQ14160 1630 aa27.49■■□□□ 1.99
HDAC6-217ENST00000469223 ZCCHC6Q5VYS8 1495 aaKnown RBP27.26■■□□□ 1.95
HDAC6-217ENST00000469223 DCAF1Q9Y4B6 1507 aa27.25■■□□□ 1.95
HDAC6-217ENST00000469223 CUX2O14529 1486 aa27.09■■□□□ 1.93
HDAC6-217ENST00000469223 ERCC6Q03468 1493 aa26.85■■□□□ 1.89
HDAC6-217ENST00000469223 TRIM41Q8WV44 630 aa26.47■■□□□ 1.83
HDAC6-217ENST00000469223 THOC2Q8NI27 1593 aaKnown RBP26.42■■□□□ 1.82
HDAC6-217ENST00000469223 NCAPD3P42695 1498 aa26.41■■□□□ 1.82
HDAC6-217ENST00000469223 NESP48681 1621 aa26.4■■□□□ 1.82
HDAC6-217ENST00000469223 HMGXB3Q12766 1538 aa26.25■■□□□ 1.79
HDAC6-217ENST00000469223 ATAD2BQ9ULI0 1458 aa26.24■■□□□ 1.79
HDAC6-217ENST00000469223 SMARCA2P51531 1590 aa26.2■■□□□ 1.79
HDAC6-217ENST00000469223 KIF21AQ7Z4S6 1674 aa26.17■■□□□ 1.78
HDAC6-217ENST00000469223 SMARCA4P51532 1647 aa26.09■■□□□ 1.77
HDAC6-217ENST00000469223 LAMC3Q9Y6N6 1575 aa26.07■■□□□ 1.76
HDAC6-217ENST00000469223 BAZ1BQ9UIG0 1483 aaKnown RBP25.98■■□□□ 1.75
HDAC6-217ENST00000469223 BAZ1AQ9NRL2 1556 aaPredicted RBP25.92■■□□□ 1.74
HDAC6-217ENST00000469223 PDS5BQ9NTI5 1447 aa25.84■■□□□ 1.73
HDAC6-217ENST00000469223 PEG3Q9GZU2 1588 aa25.79■■□□□ 1.72
HDAC6-217ENST00000469223 MRC2Q9UBG0 1479 aa25.77■■□□□ 1.72
HDAC6-217ENST00000469223 WDR62O43379 1518 aa25.77■■□□□ 1.72
HDAC6-217ENST00000469223 RIMBP3CA6NJZ7 1639 aa25.58■■□□□ 1.69
HDAC6-217ENST00000469223 RIMBP3BA6NNM3 1639 aa25.58■■□□□ 1.69
HDAC6-217ENST00000469223 RIMBP3Q9UFD9 1639 aa25.58■■□□□ 1.69
HDAC6-217ENST00000469223 OSCARQ8IYS5 282 aa25.54■■□□□ 1.68
HDAC6-217ENST00000469223 CADPSQ9ULU8 1353 aa25.54■■□□□ 1.68
HDAC6-217ENST00000469223 MROH2BQ7Z745 1585 aa25.5■■□□□ 1.67
HDAC6-217ENST00000469223 CEP164Q9UPV0 1460 aa25.48■■□□□ 1.67
HDAC6-217ENST00000469223 ARHGEF11O15085 1522 aa25.34■■□□□ 1.65
HDAC6-217ENST00000469223 FANCD2Q9BXW9 1451 aa25.34■■□□□ 1.65
HDAC6-217ENST00000469223 WIZO95785 1651 aa25.23■■□□□ 1.63
HDAC6-217ENST00000469223 URB2Q14146 1524 aaKnown RBP25.22■■□□□ 1.63
HDAC6-217ENST00000469223 CFTRP13569 1480 aa25.1■■□□□ 1.61
HDAC6-217ENST00000469223 TRHP20396 242 aaPredicted RBP25.09■■□□□ 1.61
HDAC6-217ENST00000469223 ZNF608Q9ULD9 1512 aaPredicted RBP25.06■■□□□ 1.6
HDAC6-217ENST00000469223 CYB5RLQ6IPT4 315 aa25.05■■□□□ 1.6
HDAC6-217ENST00000469223 PRDM2Q13029 1718 aa25.04■■□□□ 1.6
HDAC6-217ENST00000469223 AEBP2Q6ZN18 517 aaPredicted RBP25.04■■□□□ 1.6
HDAC6-217ENST00000469223 ARAP1Q96P48 1450 aa25.03■■□□□ 1.6
HDAC6-217ENST00000469223 CHD1O14646 1710 aa25.03■■□□□ 1.6
HDAC6-217ENST00000469223 EIF4G3O43432 1585 aaKnown RBP24.98■■□□□ 1.59
HDAC6-217ENST00000469223 IFT140Q96RY7 1462 aa24.96■■□□□ 1.59
HDAC6-217ENST00000469223 RSF1Q96T23 1441 aaPredicted RBP24.81■■□□□ 1.56
HDAC6-217ENST00000469223 TOP2AP11388 1531 aaKnown RBP24.81■■□□□ 1.56
HDAC6-217ENST00000469223 TOPBP1Q92547 1522 aa24.78■■□□□ 1.56
HDAC6-217ENST00000469223 TARBP1Q13395 1621 aaKnown RBP24.68■■□□□ 1.54
HDAC6-217ENST00000469223 AQRO60306 1485 aaKnown RBP eCLIP24.66■■□□□ 1.541e-14■■■■■ 33.6
HDAC6-217ENST00000469223 DNMBPQ6XZF7 1577 aa24.65■■□□□ 1.54
HDAC6-217ENST00000469223 FBLN2P98095 1184 aa24.62■■□□□ 1.53
HDAC6-217ENST00000469223 CLASP1Q7Z460 1538 aa24.61■■□□□ 1.53
HDAC6-217ENST00000469223 ABCC8Q09428 1581 aa24.58■■□□□ 1.52
HDAC6-217ENST00000469223 SYNJ1O43426 1573 aa24.49■■□□□ 1.51
HDAC6-217ENST00000469223 POLA1P09884 1462 aaPredicted RBP24.46■■□□□ 1.51
HDAC6-217ENST00000469223 SNAPC4Q5SXM2 1469 aa24.45■■□□□ 1.51
HDAC6-217ENST00000469223 CCDC88BA6NC98 1476 aa24.45■■□□□ 1.5
HDAC6-217ENST00000469223 RAD54L2Q9Y4B4 1467 aa24.38■■□□□ 1.49
HDAC6-217ENST00000469223 GAPVD1Q14C86 1478 aa24.35■■□□□ 1.49
HDAC6-217ENST00000469223 WDR97A6NE52 1622 aa24.34■■□□□ 1.49
HDAC6-217ENST00000469223 TDRD9Q8NDG6 1382 aaKnown RBP24.33■■□□□ 1.49
HDAC6-217ENST00000469223 MAGI1Q96QZ7 1491 aaPredicted RBP24.31■■□□□ 1.48
HDAC6-217ENST00000469223 CHMP7Q8WUX9 453 aaPredicted RBP24.25■■□□□ 1.47
HDAC6-217ENST00000469223 SOGA1O94964 1423 aa24.24■■□□□ 1.47
HDAC6-217ENST00000469223 SYNJ2O15056 1496 aa24.24■■□□□ 1.47
HDAC6-217ENST00000469223 PBRM1Q86U86 1689 aa24.24■■□□□ 1.47
HDAC6-217ENST00000469223 KIF13AQ9H1H9 1805 aa24.24■■□□□ 1.47
HDAC6-217ENST00000469223 GRIN2BQ13224 1484 aa24.19■■□□□ 1.46
HDAC6-217ENST00000469223 FGD5Q6ZNL6 1462 aa24.19■■□□□ 1.46
HDAC6-217ENST00000469223 ERCC6L2Q5T890 1561 aa24.17■■□□□ 1.46
HDAC6-217ENST00000469223 ILDR1Q86SU0 546 aaPredicted RBP24.11■■□□□ 1.45
HDAC6-217ENST00000469223 CUX1P39880 1505 aa24.04■■□□□ 1.44
HDAC6-217ENST00000469223 CEP170Q5SW79 1584 aa24.02■■□□□ 1.44
HDAC6-217ENST00000469223 ABCA5Q8WWZ7 1642 aa23.99■■□□□ 1.43
HDAC6-217ENST00000469223 SHROOM2Q13796 1616 aa23.95■■□□□ 1.42
HDAC6-217ENST00000469223 GRIN2AQ12879 1464 aa23.92■■□□□ 1.42
HDAC6-217ENST00000469223 ADAMTS12P58397 1594 aa23.89■■□□□ 1.41
HDAC6-217ENST00000469223 KDM6BO15054 1643 aa23.86■■□□□ 1.41
HDAC6-217ENST00000469223 KDM4FA0A1W2PPD8 638 aa23.86■■□□□ 1.41
HDAC6-217ENST00000469223 NUP160Q12769 1436 aa23.84■■□□□ 1.41
HDAC6-217ENST00000469223 ABCA10Q8WWZ4 1543 aa23.83■■□□□ 1.41
HDAC6-217ENST00000469223 DIP2BQ9P265 1576 aa23.82■■□□□ 1.4
HDAC6-217ENST00000469223 ABCC10Q5T3U5 1492 aa23.79■■□□□ 1.4
HDAC6-217ENST00000469223 TSPOAP1O95153 1857 aa23.79■■□□□ 1.4
HDAC6-217ENST00000469223 FAM69CQ0P6D2 419 aa23.73■■□□□ 1.39
HDAC6-217ENST00000469223 MAPKBP1O60336 1514 aa23.73■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms