RNA–Protein interactions for RNA: ENST00000466438.1

HMGXB4-206, Transcript of HMG-box containing 4, humanhuman

TSL 3

Gene HMGXB4, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB4-206ENST00000466438 NISCHQ9Y2I1 1504 aa38.19■■■■□ 3.7
HMGXB4-206ENST00000466438 ABCC9O60706 1549 aa35.57■■■■□ 3.29
HMGXB4-206ENST00000466438 CCDC180Q9P1Z9 1646 aa34.71■■■■□ 3.15
HMGXB4-206ENST00000466438 DNAJC5BQ9UF47 199 aa34.19■■■■□ 3.06
HMGXB4-206ENST00000466438 RB1CC1Q8TDY2 1594 aa33.48■■■□□ 2.95
HMGXB4-206ENST00000466438 NACADO15069 1562 aa33.03■■■□□ 2.88
HMGXB4-206ENST00000466438 PABPN1Q86U42 306 aaKnown RBP eCLIP32.94■■■□□ 2.86
HMGXB4-206ENST00000466438 UNC13AQ9UPW8 1703 aa32.69■■■□□ 2.82
HMGXB4-206ENST00000466438 DCAF8L2P0C7V8 631 aa32.55■■■□□ 2.8
HMGXB4-206ENST00000466438 BICRAQ9NZM4 1560 aa32.53■■■□□ 2.8
HMGXB4-206ENST00000466438 MYO15BQ96JP2 1530 aa32.3■■■□□ 2.76
HMGXB4-206ENST00000466438 CECR2Q9BXF3 1484 aa32.16■■■□□ 2.74
HMGXB4-206ENST00000466438 DNAJC5Q9H3Z4 198 aa32.12■■■□□ 2.73
HMGXB4-206ENST00000466438 CC2D2AQ9P2K1 1620 aa32.11■■■□□ 2.73
HMGXB4-206ENST00000466438 SHROOM4Q9ULL8 1493 aa32.07■■■□□ 2.72
HMGXB4-206ENST00000466438 EIF4G1Q04637 1599 aaKnown RBP31.82■■■□□ 2.68
HMGXB4-206ENST00000466438 DCAF1Q9Y4B6 1507 aa31.53■■■□□ 2.64
HMGXB4-206ENST00000466438 SCRIBQ14160 1630 aa31.52■■■□□ 2.64
HMGXB4-206ENST00000466438 ZCCHC6Q5VYS8 1495 aaKnown RBP31.46■■■□□ 2.63
HMGXB4-206ENST00000466438 CUX2O14529 1486 aa31.1■■■□□ 2.57
HMGXB4-206ENST00000466438 ERCC6Q03468 1493 aa30.8■■■□□ 2.52
HMGXB4-206ENST00000466438 NCAPD3P42695 1498 aa30.5■■■□□ 2.47
HMGXB4-206ENST00000466438 NESP48681 1621 aa30.29■■■□□ 2.44
HMGXB4-206ENST00000466438 TRIM41Q8WV44 630 aa30.27■■■□□ 2.44
HMGXB4-206ENST00000466438 ATAD2BQ9ULI0 1458 aa30.26■■■□□ 2.44
HMGXB4-206ENST00000466438 THOC2Q8NI27 1593 aaKnown RBP30.21■■■□□ 2.43
HMGXB4-206ENST00000466438 HMGXB3Q12766 1538 aa30.21■■■□□ 2.43
HMGXB4-206ENST00000466438 SMARCA2P51531 1590 aa30.15■■■□□ 2.42
HMGXB4-206ENST00000466438 SMARCA4P51532 1647 aa30■■■□□ 2.39
HMGXB4-206ENST00000466438 LAMC3Q9Y6N6 1575 aa29.97■■■□□ 2.39
HMGXB4-206ENST00000466438 BAZ1BQ9UIG0 1483 aaKnown RBP29.92■■■□□ 2.38
HMGXB4-206ENST00000466438 KIF21AQ7Z4S6 1674 aa29.87■■■□□ 2.37
HMGXB4-206ENST00000466438 PDS5BQ9NTI5 1447 aa29.82■■■□□ 2.36
HMGXB4-206ENST00000466438 PEG3Q9GZU2 1588 aa29.74■■■□□ 2.35
HMGXB4-206ENST00000466438 BAZ1AQ9NRL2 1556 aaPredicted RBP29.73■■■□□ 2.35
HMGXB4-206ENST00000466438 MRC2Q9UBG0 1479 aa29.62■■■□□ 2.33
HMGXB4-206ENST00000466438 WDR62O43379 1518 aa29.6■■■□□ 2.33
HMGXB4-206ENST00000466438 CADPSQ9ULU8 1353 aa29.52■■■□□ 2.32
HMGXB4-206ENST00000466438 OSCARQ8IYS5 282 aa29.48■■■□□ 2.31
HMGXB4-206ENST00000466438 MROH2BQ7Z745 1585 aa29.4■■■□□ 2.3
HMGXB4-206ENST00000466438 CEP164Q9UPV0 1460 aa29.31■■■□□ 2.28
HMGXB4-206ENST00000466438 RIMBP3CA6NJZ7 1639 aa29.21■■■□□ 2.27
HMGXB4-206ENST00000466438 RIMBP3BA6NNM3 1639 aa29.21■■■□□ 2.27
HMGXB4-206ENST00000466438 RIMBP3Q9UFD9 1639 aa29.21■■■□□ 2.27
HMGXB4-206ENST00000466438 FANCD2Q9BXW9 1451 aa29.18■■■□□ 2.26
HMGXB4-206ENST00000466438 ARHGEF11O15085 1522 aa29.04■■■□□ 2.24
HMGXB4-206ENST00000466438 URB2Q14146 1524 aaKnown RBP29■■■□□ 2.23
HMGXB4-206ENST00000466438 CFTRP13569 1480 aa29■■■□□ 2.23
HMGXB4-206ENST00000466438 WIZO95785 1651 aa28.99■■■□□ 2.23
HMGXB4-206ENST00000466438 CYB5RLQ6IPT4 315 aa28.83■■■□□ 2.21
HMGXB4-206ENST00000466438 TRHP20396 242 aaPredicted RBP28.82■■■□□ 2.2
HMGXB4-206ENST00000466438 AEBP2Q6ZN18 517 aaPredicted RBP28.8■■■□□ 2.2
HMGXB4-206ENST00000466438 ZNF608Q9ULD9 1512 aaPredicted RBP28.79■■■□□ 2.2
HMGXB4-206ENST00000466438 IFT140Q96RY7 1462 aa28.77■■■□□ 2.2
HMGXB4-206ENST00000466438 ARAP1Q96P48 1450 aa28.69■■■□□ 2.18
HMGXB4-206ENST00000466438 PRDM2Q13029 1718 aa28.61■■■□□ 2.17
HMGXB4-206ENST00000466438 EIF4G3O43432 1585 aaKnown RBP28.61■■■□□ 2.17
HMGXB4-206ENST00000466438 TOP2AP11388 1531 aaKnown RBP28.59■■■□□ 2.17
HMGXB4-206ENST00000466438 RSF1Q96T23 1441 aaPredicted RBP28.56■■■□□ 2.16
HMGXB4-206ENST00000466438 CHD1O14646 1710 aa28.55■■■□□ 2.16
HMGXB4-206ENST00000466438 TOPBP1Q92547 1522 aa28.53■■■□□ 2.16
HMGXB4-206ENST00000466438 CHIC1Q5VXU3 224 aa28.43■■■□□ 2.14
HMGXB4-206ENST00000466438 ABCC8Q09428 1581 aa28.42■■■□□ 2.14
HMGXB4-206ENST00000466438 AQRO60306 1485 aaKnown RBP eCLIP28.4■■■□□ 2.14
HMGXB4-206ENST00000466438 FBLN2P98095 1184 aa28.37■■■□□ 2.13
HMGXB4-206ENST00000466438 DNMBPQ6XZF7 1577 aa28.35■■■□□ 2.13
HMGXB4-206ENST00000466438 TARBP1Q13395 1621 aaKnown RBP28.35■■■□□ 2.13
HMGXB4-206ENST00000466438 CCDC88BA6NC98 1476 aa28.25■■■□□ 2.11
HMGXB4-206ENST00000466438 CLASP1Q7Z460 1538 aa28.23■■■□□ 2.11
HMGXB4-206ENST00000466438 POLA1P09884 1462 aaPredicted RBP28.18■■■□□ 2.1
HMGXB4-206ENST00000466438 SYNJ1O43426 1573 aa28.12■■■□□ 2.09
HMGXB4-206ENST00000466438 SNAPC4Q5SXM2 1469 aa28.1■■■□□ 2.09
HMGXB4-206ENST00000466438 TDRD9Q8NDG6 1382 aaKnown RBP28.07■■■□□ 2.08
HMGXB4-206ENST00000466438 RAD54L2Q9Y4B4 1467 aa28.06■■■□□ 2.08
HMGXB4-206ENST00000466438 CHMP7Q8WUX9 453 aaPredicted RBP28.04■■■□□ 2.08
HMGXB4-206ENST00000466438 WDR97A6NE52 1622 aa28.03■■■□□ 2.08
HMGXB4-206ENST00000466438 MAGI1Q96QZ7 1491 aaPredicted RBP28.02■■■□□ 2.08
HMGXB4-206ENST00000466438 SOGA1O94964 1423 aa28.01■■■□□ 2.08
HMGXB4-206ENST00000466438 GAPVD1Q14C86 1478 aa27.99■■■□□ 2.07
HMGXB4-206ENST00000466438 SYNJ2O15056 1496 aa27.93■■■□□ 2.06
HMGXB4-206ENST00000466438 GRIN2BQ13224 1484 aa27.9■■■□□ 2.06
HMGXB4-206ENST00000466438 FGD5Q6ZNL6 1462 aa27.86■■■□□ 2.05
HMGXB4-206ENST00000466438 PBRM1Q86U86 1689 aa27.72■■■□□ 2.03
HMGXB4-206ENST00000466438 ERCC6L2Q5T890 1561 aa27.69■■■□□ 2.02
HMGXB4-206ENST00000466438 CUX1P39880 1505 aa27.68■■■□□ 2.02
HMGXB4-206ENST00000466438 KIF13AQ9H1H9 1805 aa27.62■■■□□ 2.01
HMGXB4-206ENST00000466438 CEP170Q5SW79 1584 aa27.57■■■□□ 2
HMGXB4-206ENST00000466438 ABCA5Q8WWZ7 1642 aa27.56■■■□□ 2
HMGXB4-206ENST00000466438 ILDR1Q86SU0 546 aaPredicted RBP27.55■■■□□ 2
HMGXB4-206ENST00000466438 GRIN2AQ12879 1464 aa27.54■■■□□ 2
HMGXB4-206ENST00000466438 ABCA10Q8WWZ4 1543 aa27.51■■□□□ 1.99
HMGXB4-206ENST00000466438 NUP160Q12769 1436 aa27.5■■□□□ 1.99
HMGXB4-206ENST00000466438 SHROOM2Q13796 1616 aa27.49■■□□□ 1.99
HMGXB4-206ENST00000466438 KDM4FA0A1W2PPD8 638 aa27.42■■□□□ 1.98
HMGXB4-206ENST00000466438 ADAMTS12P58397 1594 aa27.42■■□□□ 1.98
HMGXB4-206ENST00000466438 ABCC10Q5T3U5 1492 aa27.38■■□□□ 1.97
HMGXB4-206ENST00000466438 FAM69CQ0P6D2 419 aa27.35■■□□□ 1.97
HMGXB4-206ENST00000466438 FHAD1B1AJZ9 1412 aa27.29■■□□□ 1.96
HMGXB4-206ENST00000466438 MAPKBP1O60336 1514 aa27.29■■□□□ 1.96
HMGXB4-206ENST00000466438 KDM6BO15054 1643 aa27.29■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 88.3 ms