RNA–Protein interactions for RNA: ENST00000462421.1

DDX39B-216, Transcript of DExD-box helicase 39B, humanhuman

TSL 3

Gene DDX39B, Length 618 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39B-216ENST00000462421 NISCHQ9Y2I1 1504 aa21.45■■□□□ 1.02
DDX39B-216ENST00000462421 CCDC180Q9P1Z9 1646 aa19.13■□□□□ 0.65
DDX39B-216ENST00000462421 ABCC9O60706 1549 aa18.88■□□□□ 0.61
DDX39B-216ENST00000462421 DCAF8L2P0C7V8 631 aa18.22■□□□□ 0.51
DDX39B-216ENST00000462421 RB1CC1Q8TDY2 1594 aa18.16■□□□□ 0.5
DDX39B-216ENST00000462421 NACADO15069 1562 aa18.07■□□□□ 0.48
DDX39B-216ENST00000462421 MYO15BQ96JP2 1530 aa17.87■□□□□ 0.45
DDX39B-216ENST00000462421 ZCCHC6Q5VYS8 1495 aaKnown RBP17.83■□□□□ 0.45
DDX39B-216ENST00000462421 AEBP2Q6ZN18 517 aaPredicted RBP17.78■□□□□ 0.44
DDX39B-216ENST00000462421 DCAF1Q9Y4B6 1507 aa17.73■□□□□ 0.43
DDX39B-216ENST00000462421 PABPN1Q86U42 306 aaKnown RBP eCLIP17.63■□□□□ 0.414e-19■■□□□ 12
DDX39B-216ENST00000462421 SCRIBQ14160 1630 aa17.48■□□□□ 0.39
DDX39B-216ENST00000462421 UNC13AQ9UPW8 1703 aa17.48■□□□□ 0.39
DDX39B-216ENST00000462421 SHROOM4Q9ULL8 1493 aa17.42■□□□□ 0.38
DDX39B-216ENST00000462421 BICRAQ9NZM4 1560 aa17.38■□□□□ 0.37
DDX39B-216ENST00000462421 DNAJC5BQ9UF47 199 aa17.24■□□□□ 0.35
DDX39B-216ENST00000462421 EIF4G1Q04637 1599 aaKnown RBP17.06■□□□□ 0.32
DDX39B-216ENST00000462421 CC2D2AQ9P2K1 1620 aa17.02■□□□□ 0.31
DDX39B-216ENST00000462421 CECR2Q9BXF3 1484 aa17.01■□□□□ 0.31
DDX39B-216ENST00000462421 BAZ1AQ9NRL2 1556 aaPredicted RBP16.71■□□□□ 0.27
DDX39B-216ENST00000462421 SMARCA2P51531 1590 aa16.68■□□□□ 0.26
DDX39B-216ENST00000462421 CHIC1Q5VXU3 224 aa16.68■□□□□ 0.26
DDX39B-216ENST00000462421 SMARCA4P51532 1647 aa16.67■□□□□ 0.26
DDX39B-216ENST00000462421 NCAPD3P42695 1498 aa16.62■□□□□ 0.25
DDX39B-216ENST00000462421 ATAD2BQ9ULI0 1458 aa16.61■□□□□ 0.25
DDX39B-216ENST00000462421 POTEDQ86YR6 584 aa16.59■□□□□ 0.25
DDX39B-216ENST00000462421 BAZ1BQ9UIG0 1483 aaKnown RBP16.58■□□□□ 0.24
DDX39B-216ENST00000462421 HMGXB3Q12766 1538 aa16.55■□□□□ 0.24
DDX39B-216ENST00000462421 MROH2BQ7Z745 1585 aa16.48■□□□□ 0.23
DDX39B-216ENST00000462421 PEG3Q9GZU2 1588 aa16.46■□□□□ 0.23
DDX39B-216ENST00000462421 ERCC6Q03468 1493 aa16.45■□□□□ 0.22
DDX39B-216ENST00000462421 WIZO95785 1651 aa16.29■□□□□ 0.2
DDX39B-216ENST00000462421 RSF1Q96T23 1441 aaPredicted RBP16.28■□□□□ 0.2
DDX39B-216ENST00000462421 LAMC3Q9Y6N6 1575 aa16.26■□□□□ 0.19
DDX39B-216ENST00000462421 PDS5BQ9NTI5 1447 aa16.25■□□□□ 0.19
DDX39B-216ENST00000462421 NESP48681 1621 aa16.21■□□□□ 0.19
DDX39B-216ENST00000462421 CUX2O14529 1486 aa16.21■□□□□ 0.19
DDX39B-216ENST00000462421 TOP2AP11388 1531 aaKnown RBP16.2■□□□□ 0.18
DDX39B-216ENST00000462421 CADPSQ9ULU8 1353 aa16.19■□□□□ 0.18
DDX39B-216ENST00000462421 CEP164Q9UPV0 1460 aa16.05■□□□□ 0.16
DDX39B-216ENST00000462421 DNAJC5Q9H3Z4 198 aa16.03■□□□□ 0.16
DDX39B-216ENST00000462421 CFTRP13569 1480 aa16.02■□□□□ 0.15
DDX39B-216ENST00000462421 FANCD2Q9BXW9 1451 aa16.02■□□□□ 0.15
DDX39B-216ENST00000462421 MRC2Q9UBG0 1479 aa16.02■□□□□ 0.15
DDX39B-216ENST00000462421 KIF21AQ7Z4S6 1674 aa16.01■□□□□ 0.15
DDX39B-216ENST00000462421 THOC2Q8NI27 1593 aaKnown RBP15.99■□□□□ 0.15
DDX39B-216ENST00000462421 CCDC88BA6NC98 1476 aa15.97■□□□□ 0.15
DDX39B-216ENST00000462421 SUPT5HO00267 1087 aaKnown RBP15.97■□□□□ 0.15
DDX39B-216ENST00000462421 WDR62O43379 1518 aa15.9■□□□□ 0.14
DDX39B-216ENST00000462421 PRDM2Q13029 1718 aa15.84■□□□□ 0.13
DDX39B-216ENST00000462421 ABCC8Q09428 1581 aa15.81■□□□□ 0.12
DDX39B-216ENST00000462421 URB2Q14146 1524 aaKnown RBP15.76■□□□□ 0.11
DDX39B-216ENST00000462421 IFT140Q96RY7 1462 aa15.71■□□□□ 0.11
DDX39B-216ENST00000462421 TOPBP1Q92547 1522 aa15.7■□□□□ 0.1
DDX39B-216ENST00000462421 DNMBPQ6XZF7 1577 aa15.7■□□□□ 0.1
DDX39B-216ENST00000462421 OSCARQ8IYS5 282 aa15.57■□□□□ 0.08
DDX39B-216ENST00000462421 SOGA1O94964 1423 aa15.56■□□□□ 0.08
DDX39B-216ENST00000462421 POLA1P09884 1462 aaPredicted RBP15.55■□□□□ 0.08
DDX39B-216ENST00000462421 FBLN2P98095 1184 aa15.52■□□□□ 0.08
DDX39B-216ENST00000462421 ZNF608Q9ULD9 1512 aaPredicted RBP15.52■□□□□ 0.07
DDX39B-216ENST00000462421 FGD5Q6ZNL6 1462 aa15.52■□□□□ 0.07
DDX39B-216ENST00000462421 EIF4G3O43432 1585 aaKnown RBP15.5■□□□□ 0.07
DDX39B-216ENST00000462421 CUX1P39880 1505 aa15.49■□□□□ 0.07
DDX39B-216ENST00000462421 SENP3Q9H4L4 574 aaPredicted RBP15.48■□□□□ 0.07
DDX39B-216ENST00000462421 AQRO60306 1485 aaKnown RBP eCLIP15.47■□□□□ 0.073e-15■■■■■ 31.3
DDX39B-216ENST00000462421 RAD54L2Q9Y4B4 1467 aa15.47■□□□□ 0.07
DDX39B-216ENST00000462421 WRNQ14191 1432 aaPredicted RBP eCLIP15.47■□□□□ 0.07
DDX39B-216ENST00000462421 WDR97A6NE52 1622 aa15.46■□□□□ 0.07
DDX39B-216ENST00000462421 TDRD9Q8NDG6 1382 aaKnown RBP15.46■□□□□ 0.07
DDX39B-216ENST00000462421 TARBP1Q13395 1621 aaKnown RBP15.46■□□□□ 0.06
DDX39B-216ENST00000462421 CHMP7Q8WUX9 453 aaPredicted RBP15.42■□□□□ 0.06
DDX39B-216ENST00000462421 GRIN2BQ13224 1484 aa15.4■□□□□ 0.06
DDX39B-216ENST00000462421 TRIM41Q8WV44 630 aa15.38■□□□□ 0.05
DDX39B-216ENST00000462421 GAPVD1Q14C86 1478 aa15.38■□□□□ 0.05
DDX39B-216ENST00000462421 SNAPC4Q5SXM2 1469 aa15.37■□□□□ 0.05
DDX39B-216ENST00000462421 MAGI1Q96QZ7 1491 aaPredicted RBP15.37■□□□□ 0.05
DDX39B-216ENST00000462421 ABCA10Q8WWZ4 1543 aa15.36■□□□□ 0.05
DDX39B-216ENST00000462421 TOP2BQ02880 1626 aa15.35■□□□□ 0.05
DDX39B-216ENST00000462421 BIVM-ERCC5R4GMW8 1640 aa15.33■□□□□ 0.04
DDX39B-216ENST00000462421 SYNJ2O15056 1496 aa15.3■□□□□ 0.04
DDX39B-216ENST00000462421 SYNJ1O43426 1573 aa15.3■□□□□ 0.04
DDX39B-216ENST00000462421 CHD1O14646 1710 aa15.28■□□□□ 0.04
DDX39B-216ENST00000462421 PBRM1Q86U86 1689 aa15.27■□□□□ 0.03
DDX39B-216ENST00000462421 ABCA5Q8WWZ7 1642 aa15.25■□□□□ 0.03
DDX39B-216ENST00000462421 FHAD1B1AJZ9 1412 aa15.21■□□□□ 0.03
DDX39B-216ENST00000462421 KIF27Q86VH2 1401 aa15.21■□□□□ 0.03
DDX39B-216ENST00000462421 ARHGEF11O15085 1522 aa15.21■□□□□ 0.03
DDX39B-216ENST00000462421 ERICH3Q5RHP9 1530 aa15.2■□□□□ 0.02
DDX39B-216ENST00000462421 RIMBP3CA6NJZ7 1639 aa15.18■□□□□ 0.02
DDX39B-216ENST00000462421 RIMBP3BA6NNM3 1639 aa15.18■□□□□ 0.02
DDX39B-216ENST00000462421 RIMBP3Q9UFD9 1639 aa15.18■□□□□ 0.02
DDX39B-216ENST00000462421 CYB5RLQ6IPT4 315 aa15.17■□□□□ 0.02
DDX39B-216ENST00000462421 ADAMTS12P58397 1594 aa15.16■□□□□ 0.02
DDX39B-216ENST00000462421 GRIN2AQ12879 1464 aa15.16■□□□□ 0.02
DDX39B-216ENST00000462421 CLASP1Q7Z460 1538 aa15.11■□□□□ 0.01
DDX39B-216ENST00000462421 PHF23Q9BUL5 403 aaPredicted RBP15.07■□□□□ 0
DDX39B-216ENST00000462421 CUL7Q14999 1698 aa15.06■□□□□ 0
DDX39B-216ENST00000462421 NUP160Q12769 1436 aa15.05■□□□□ -0
DDX39B-216ENST00000462421 ARAP1Q96P48 1450 aa15.03■□□□□ -0
DDX39B-216ENST00000462421 TRHP20396 242 aaPredicted RBP15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 125.3 ms