RNA–Protein interactions for RNA: ENST00000461981.5

CLK1-207, Transcript of CDC like kinase 1, humanhuman

TSL 2

Gene CLK1, Length 3,173 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-207ENST00000461981 NISCHQ9Y2I1 1504 aa13.95□□□□□ -0.18
CLK1-207ENST00000461981 CCDC180Q9P1Z9 1646 aa12.93□□□□□ -0.34
CLK1-207ENST00000461981 ABCC9O60706 1549 aa12.32□□□□□ -0.44
CLK1-207ENST00000461981 MYO15BQ96JP2 1530 aa12.16□□□□□ -0.46
CLK1-207ENST00000461981 RB1CC1Q8TDY2 1594 aa12.15□□□□□ -0.46
CLK1-207ENST00000461981 NACADO15069 1562 aa12.13□□□□□ -0.47
CLK1-207ENST00000461981 SHROOM4Q9ULL8 1493 aa12.04□□□□□ -0.48
CLK1-207ENST00000461981 DCAF1Q9Y4B6 1507 aa11.89□□□□□ -0.51
CLK1-207ENST00000461981 UNC13AQ9UPW8 1703 aa11.77□□□□□ -0.53
CLK1-207ENST00000461981 BICRAQ9NZM4 1560 aa11.68□□□□□ -0.54
CLK1-207ENST00000461981 ZCCHC6Q5VYS8 1495 aaKnown RBP11.6□□□□□ -0.55
CLK1-207ENST00000461981 DNAJC5BQ9UF47 199 aa11.48□□□□□ -0.57
CLK1-207ENST00000461981 EIF4G1Q04637 1599 aaKnown RBP11.37□□□□□ -0.59
CLK1-207ENST00000461981 CC2D2AQ9P2K1 1620 aa11.37□□□□□ -0.59
CLK1-207ENST00000461981 CECR2Q9BXF3 1484 aa11.29□□□□□ -0.6
CLK1-207ENST00000461981 SCRIBQ14160 1630 aa11.21□□□□□ -0.61
CLK1-207ENST00000461981 PABPN1Q86U42 306 aaKnown RBP eCLIP11.21□□□□□ -0.62
CLK1-207ENST00000461981 CUX2O14529 1486 aa11.17□□□□□ -0.62
CLK1-207ENST00000461981 HMGXB3Q12766 1538 aa11.11□□□□□ -0.63
CLK1-207ENST00000461981 NCAPD3P42695 1498 aa11.09□□□□□ -0.63
CLK1-207ENST00000461981 SMARCA2P51531 1590 aa11.07□□□□□ -0.64
CLK1-207ENST00000461981 PEG3Q9GZU2 1588 aa11.06□□□□□ -0.64
CLK1-207ENST00000461981 DCAF8L2P0C7V8 631 aa11.01□□□□□ -0.65
CLK1-207ENST00000461981 SMARCA4P51532 1647 aa10.94□□□□□ -0.66
CLK1-207ENST00000461981 DNAJC5Q9H3Z4 198 aa10.93□□□□□ -0.66
CLK1-207ENST00000461981 LAMC3Q9Y6N6 1575 aa10.92□□□□□ -0.66
CLK1-207ENST00000461981 BAZ1AQ9NRL2 1556 aaPredicted RBP10.92□□□□□ -0.66
CLK1-207ENST00000461981 ATAD2BQ9ULI0 1458 aa10.9□□□□□ -0.66
CLK1-207ENST00000461981 THOC2Q8NI27 1593 aaKnown RBP10.84□□□□□ -0.67
CLK1-207ENST00000461981 BAZ1BQ9UIG0 1483 aaKnown RBP10.76□□□□□ -0.69
CLK1-207ENST00000461981 ERCC6Q03468 1493 aa10.75□□□□□ -0.69
CLK1-207ENST00000461981 PDS5BQ9NTI5 1447 aa10.73□□□□□ -0.69
CLK1-207ENST00000461981 WDR62O43379 1518 aa10.71□□□□□ -0.69
CLK1-207ENST00000461981 PRDM2Q13029 1718 aa10.69□□□□□ -0.7
CLK1-207ENST00000461981 MRC2Q9UBG0 1479 aa10.65□□□□□ -0.7
CLK1-207ENST00000461981 KIF21AQ7Z4S6 1674 aa10.64□□□□□ -0.71
CLK1-207ENST00000461981 CADPSQ9ULU8 1353 aa10.6□□□□□ -0.71
CLK1-207ENST00000461981 WDR97A6NE52 1622 aa10.58□□□□□ -0.72
CLK1-207ENST00000461981 MROH2BQ7Z745 1585 aa10.57□□□□□ -0.72
CLK1-207ENST00000461981 TOP2AP11388 1531 aaKnown RBP10.54□□□□□ -0.72
CLK1-207ENST00000461981 CFTRP13569 1480 aa10.53□□□□□ -0.72
CLK1-207ENST00000461981 NESP48681 1621 aa10.53□□□□□ -0.72
CLK1-207ENST00000461981 CEP164Q9UPV0 1460 aa10.52□□□□□ -0.73
CLK1-207ENST00000461981 ABCC8Q09428 1581 aa10.52□□□□□ -0.73
CLK1-207ENST00000461981 FANCD2Q9BXW9 1451 aa10.43□□□□□ -0.74
CLK1-207ENST00000461981 IFT140Q96RY7 1462 aa10.42□□□□□ -0.74
CLK1-207ENST00000461981 WIZO95785 1651 aa10.42□□□□□ -0.74
CLK1-207ENST00000461981 DNMBPQ6XZF7 1577 aa10.35□□□□□ -0.75
CLK1-207ENST00000461981 URB2Q14146 1524 aaKnown RBP10.34□□□□□ -0.75
CLK1-207ENST00000461981 RSF1Q96T23 1441 aaPredicted RBP10.33□□□□□ -0.76
CLK1-207ENST00000461981 RIMBP3CA6NJZ7 1639 aa10.27□□□□□ -0.77
CLK1-207ENST00000461981 RIMBP3BA6NNM3 1639 aa10.27□□□□□ -0.77
CLK1-207ENST00000461981 TARBP1Q13395 1621 aaKnown RBP10.27□□□□□ -0.77
CLK1-207ENST00000461981 RIMBP3Q9UFD9 1639 aa10.27□□□□□ -0.77
CLK1-207ENST00000461981 TOPBP1Q92547 1522 aa10.27□□□□□ -0.77
CLK1-207ENST00000461981 OSCARQ8IYS5 282 aa10.26□□□□□ -0.77
CLK1-207ENST00000461981 PELP1Q8IZL8 1130 aaKnown RBP10.25□□□□□ -0.77
CLK1-207ENST00000461981 EIF4G3O43432 1585 aaKnown RBP10.24□□□□□ -0.77
CLK1-207ENST00000461981 CLASP1Q7Z460 1538 aa10.2□□□□□ -0.78
CLK1-207ENST00000461981 CCDC88BA6NC98 1476 aa10.2□□□□□ -0.78
CLK1-207ENST00000461981 MAGI1Q96QZ7 1491 aaPredicted RBP10.2□□□□□ -0.78
CLK1-207ENST00000461981 ARHGEF11O15085 1522 aa10.19□□□□□ -0.78
CLK1-207ENST00000461981 CHD1O14646 1710 aa10.18□□□□□ -0.78
CLK1-207ENST00000461981 SYNJ1O43426 1573 aa10.17□□□□□ -0.78
CLK1-207ENST00000461981 POLA1P09884 1462 aaPredicted RBP10.1□□□□□ -0.79
CLK1-207ENST00000461981 GRIN2BQ13224 1484 aa10.09□□□□□ -0.79
CLK1-207ENST00000461981 PBRM1Q86U86 1689 aa10.09□□□□□ -0.79
CLK1-207ENST00000461981 ABCA5Q8WWZ7 1642 aa10.09□□□□□ -0.79
CLK1-207ENST00000461981 ZNF608Q9ULD9 1512 aaPredicted RBP10.08□□□□□ -0.8
CLK1-207ENST00000461981 SYNJ2O15056 1496 aa10.07□□□□□ -0.8
CLK1-207ENST00000461981 ARAP1Q96P48 1450 aa10.06□□□□□ -0.8
CLK1-207ENST00000461981 ABCA10Q8WWZ4 1543 aa10.06□□□□□ -0.8
CLK1-207ENST00000461981 SHROOM2Q13796 1616 aa10.06□□□□□ -0.8
CLK1-207ENST00000461981 BIVM-ERCC5R4GMW8 1640 aa10.05□□□□□ -0.8
CLK1-207ENST00000461981 SOGA1O94964 1423 aa10.01□□□□□ -0.81
CLK1-207ENST00000461981 MYT1Q01538 1121 aa10□□□□□ -0.81
CLK1-207ENST00000461981 ERICH3Q5RHP9 1530 aa10□□□□□ -0.81
CLK1-207ENST00000461981 FGD5Q6ZNL6 1462 aa10□□□□□ -0.81
CLK1-207ENST00000461981 CUX1P39880 1505 aa10□□□□□ -0.81
CLK1-207ENST00000461981 SNAPC4Q5SXM2 1469 aa9.99□□□□□ -0.81
CLK1-207ENST00000461981 ADAMTS12P58397 1594 aa9.99□□□□□ -0.81
CLK1-207ENST00000461981 NUP160Q12769 1436 aa9.97□□□□□ -0.81
CLK1-207ENST00000461981 TRIM41Q8WV44 630 aa9.97□□□□□ -0.81
CLK1-207ENST00000461981 TOP2BQ02880 1626 aa9.96□□□□□ -0.82
CLK1-207ENST00000461981 GAPVD1Q14C86 1478 aa9.94□□□□□ -0.82
CLK1-207ENST00000461981 AQRO60306 1485 aaKnown RBP eCLIP9.93□□□□□ -0.821e-7■■□□□ 13.7
CLK1-207ENST00000461981 FHAD1B1AJZ9 1412 aa9.91□□□□□ -0.82
CLK1-207ENST00000461981 GRIN2AQ12879 1464 aa9.91□□□□□ -0.82
CLK1-207ENST00000461981 MAPKBP1O60336 1514 aa9.89□□□□□ -0.83
CLK1-207ENST00000461981 CUL7Q14999 1698 aa9.88□□□□□ -0.83
CLK1-207ENST00000461981 RAD54L2Q9Y4B4 1467 aa9.88□□□□□ -0.83
CLK1-207ENST00000461981 WRNQ14191 1432 aaPredicted RBP eCLIP9.88□□□□□ -0.83
CLK1-207ENST00000461981 CEP170Q5SW79 1584 aa9.87□□□□□ -0.83
CLK1-207ENST00000461981 RUSC2Q8N2Y8 1516 aa9.83□□□□□ -0.84
CLK1-207ENST00000461981 KIF13AQ9H1H9 1805 aa9.82□□□□□ -0.84
CLK1-207ENST00000461981 GLI2P10070 1586 aa9.81□□□□□ -0.84
CLK1-207ENST00000461981 CHMP7Q8WUX9 453 aaPredicted RBP9.79□□□□□ -0.84
CLK1-207ENST00000461981 TDRD9Q8NDG6 1382 aaKnown RBP9.79□□□□□ -0.84
CLK1-207ENST00000461981 UHRF1BP1LA0JNW5 1464 aa9.78□□□□□ -0.84
CLK1-207ENST00000461981 ABCC10Q5T3U5 1492 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms