RNA–Protein interactions for RNA: ENST00000447696.5

MRPL28-205, Transcript of mitochondrial ribosomal protein L28, humanhuman

TSL 3

Gene MRPL28, Length 722 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRPL28-205ENST00000447696 NISCHQ9Y2I1 1504 aa59■■■■■ 7.04
MRPL28-205ENST00000447696 CCDC180Q9P1Z9 1646 aa52.66■■■■■ 6.02
MRPL28-205ENST00000447696 ABCC9O60706 1549 aa52.44■■■■■ 5.98
MRPL28-205ENST00000447696 RB1CC1Q8TDY2 1594 aa49.76■■■■■ 5.56
MRPL28-205ENST00000447696 DNAJC5BQ9UF47 199 aa49.74■■■■■ 5.55
MRPL28-205ENST00000447696 NACADO15069 1562 aa49.61■■■■■ 5.53
MRPL28-205ENST00000447696 DCAF8L2P0C7V8 631 aa49.3■■■■■ 5.48
MRPL28-205ENST00000447696 MYO15BQ96JP2 1530 aa49.24■■■■■ 5.47
MRPL28-205ENST00000447696 ZCCHC6Q5VYS8 1495 aaKnown RBP49.09■■■■■ 5.45
MRPL28-205ENST00000447696 DCAF1Q9Y4B6 1507 aa48.88■■■■■ 5.41
MRPL28-205ENST00000447696 PABPN1Q86U42 306 aaKnown RBP eCLIP48.72■■■■■ 5.394e-8■■■■■ 30
MRPL28-205ENST00000447696 UNC13AQ9UPW8 1703 aa48.52■■■■■ 5.36
MRPL28-205ENST00000447696 BICRAQ9NZM4 1560 aa48.22■■■■■ 5.31
MRPL28-205ENST00000447696 SCRIBQ14160 1630 aa47.93■■■■■ 5.26
MRPL28-205ENST00000447696 SHROOM4Q9ULL8 1493 aa47.81■■■■■ 5.24
MRPL28-205ENST00000447696 CECR2Q9BXF3 1484 aa47.39■■■■■ 5.18
MRPL28-205ENST00000447696 CC2D2AQ9P2K1 1620 aa47.35■■■■■ 5.17
MRPL28-205ENST00000447696 EIF4G1Q04637 1599 aaKnown RBP47.12■■■■■ 5.13
MRPL28-205ENST00000447696 DNAJC5Q9H3Z4 198 aa46.32■■■■■ 5.01
MRPL28-205ENST00000447696 SMARCA4P51532 1647 aa45.85■■■■■ 4.93
MRPL28-205ENST00000447696 BAZ1AQ9NRL2 1556 aaPredicted RBP45.78■■■■■ 4.92
MRPL28-205ENST00000447696 NCAPD3P42695 1498 aa45.77■■■■■ 4.92
MRPL28-205ENST00000447696 ATAD2BQ9ULI0 1458 aa45.71■■■■■ 4.91
MRPL28-205ENST00000447696 SMARCA2P51531 1590 aa45.67■■■■■ 4.9
MRPL28-205ENST00000447696 CUX2O14529 1486 aa45.62■■■■■ 4.89
MRPL28-205ENST00000447696 HMGXB3Q12766 1538 aa45.53■■■■■ 4.88
MRPL28-205ENST00000447696 PEG3Q9GZU2 1588 aa45.46■■■■■ 4.87
MRPL28-205ENST00000447696 MROH2BQ7Z745 1585 aa45.43■■■■■ 4.86
MRPL28-205ENST00000447696 ERCC6Q03468 1493 aa45.42■■■■■ 4.86
MRPL28-205ENST00000447696 BAZ1BQ9UIG0 1483 aaKnown RBP45.31■■■■■ 4.84
MRPL28-205ENST00000447696 WIZO95785 1651 aa44.89■■■■■ 4.78
MRPL28-205ENST00000447696 NESP48681 1621 aa44.82■■■■■ 4.77
MRPL28-205ENST00000447696 RSF1Q96T23 1441 aaPredicted RBP44.79■■■■■ 4.76
MRPL28-205ENST00000447696 LAMC3Q9Y6N6 1575 aa44.62■■■■■ 4.73
MRPL28-205ENST00000447696 THOC2Q8NI27 1593 aaKnown RBP44.53■■■■■ 4.72
MRPL28-205ENST00000447696 TOP2AP11388 1531 aaKnown RBP44.47■■■■■ 4.71
MRPL28-205ENST00000447696 PDS5BQ9NTI5 1447 aa44.41■■■■■ 4.7
MRPL28-205ENST00000447696 CADPSQ9ULU8 1353 aa44.4■■■■■ 4.7
MRPL28-205ENST00000447696 KIF21AQ7Z4S6 1674 aa44.19■■■■■ 4.66
MRPL28-205ENST00000447696 CFTRP13569 1480 aa44.07■■■■■ 4.65
MRPL28-205ENST00000447696 MRC2Q9UBG0 1479 aa43.97■■■■■ 4.63
MRPL28-205ENST00000447696 CCDC88BA6NC98 1476 aa43.9■■■■■ 4.62
MRPL28-205ENST00000447696 TRIM41Q8WV44 630 aa43.9■■■■■ 4.62
MRPL28-205ENST00000447696 FANCD2Q9BXW9 1451 aa43.88■■■■■ 4.61
MRPL28-205ENST00000447696 CEP164Q9UPV0 1460 aa43.87■■■■■ 4.61
MRPL28-205ENST00000447696 WDR62O43379 1518 aa43.86■■■■■ 4.61
MRPL28-205ENST00000447696 PRDM2Q13029 1718 aa43.67■■■■■ 4.58
MRPL28-205ENST00000447696 OSCARQ8IYS5 282 aa43.46■■■■■ 4.55
MRPL28-205ENST00000447696 URB2Q14146 1524 aaKnown RBP43.45■■■■■ 4.55
MRPL28-205ENST00000447696 SUPT5HO00267 1087 aaKnown RBP43.26■■■■■ 4.52
MRPL28-205ENST00000447696 ABCC8Q09428 1581 aa43.16■■■■■ 4.5
MRPL28-205ENST00000447696 TOPBP1Q92547 1522 aa43.13■■■■■ 4.5
MRPL28-205ENST00000447696 DNMBPQ6XZF7 1577 aa43.07■■■■■ 4.48
MRPL28-205ENST00000447696 IFT140Q96RY7 1462 aa42.99■■■■■ 4.47
MRPL28-205ENST00000447696 RIMBP3CA6NJZ7 1639 aa42.78■■■■■ 4.44
MRPL28-205ENST00000447696 RIMBP3BA6NNM3 1639 aa42.78■■■■■ 4.44
MRPL28-205ENST00000447696 RIMBP3Q9UFD9 1639 aa42.78■■■■■ 4.44
MRPL28-205ENST00000447696 ZNF608Q9ULD9 1512 aaPredicted RBP42.76■■■■■ 4.44
MRPL28-205ENST00000447696 POLA1P09884 1462 aaPredicted RBP42.74■■■■■ 4.43
MRPL28-205ENST00000447696 TARBP1Q13395 1621 aaKnown RBP42.69■■■■■ 4.42
MRPL28-205ENST00000447696 CUX1P39880 1505 aa42.66■■■■■ 4.42
MRPL28-205ENST00000447696 ARHGEF11O15085 1522 aa42.64■■■■■ 4.42
MRPL28-205ENST00000447696 EIF4G3O43432 1585 aaKnown RBP42.61■■■■■ 4.41
MRPL28-205ENST00000447696 FGD5Q6ZNL6 1462 aa42.57■■■■■ 4.41
MRPL28-205ENST00000447696 SOGA1O94964 1423 aa42.54■■■■■ 4.4
MRPL28-205ENST00000447696 RAD54L2Q9Y4B4 1467 aa42.51■■■■■ 4.4
MRPL28-205ENST00000447696 AQRO60306 1485 aaKnown RBP eCLIP42.47■■■■■ 4.394e-7■■■■■ 27.1
MRPL28-205ENST00000447696 WDR97A6NE52 1622 aa42.42■■■■■ 4.38
MRPL28-205ENST00000447696 CYB5RLQ6IPT4 315 aa42.39■■■■■ 4.38
MRPL28-205ENST00000447696 TDRD9Q8NDG6 1382 aaKnown RBP42.32■■■■■ 4.37
MRPL28-205ENST00000447696 WRNQ14191 1432 aaPredicted RBP eCLIP42.25■■■■■ 4.35
MRPL28-205ENST00000447696 TOP2BQ02880 1626 aa42.2■■■■■ 4.35
MRPL28-205ENST00000447696 BIVM-ERCC5R4GMW8 1640 aa42.2■■■■■ 4.35
MRPL28-205ENST00000447696 CHD1O14646 1710 aa42.19■■■■■ 4.34
MRPL28-205ENST00000447696 FBLN2P98095 1184 aa42.18■■■■■ 4.34
MRPL28-205ENST00000447696 ABCA10Q8WWZ4 1543 aa42.18■■■■■ 4.34
MRPL28-205ENST00000447696 TRHP20396 242 aaPredicted RBP42.15■■■■■ 4.34
MRPL28-205ENST00000447696 ARAP1Q96P48 1450 aa42.15■■■■■ 4.34
MRPL28-205ENST00000447696 SYNJ1O43426 1573 aa42.14■■■■■ 4.34
MRPL28-205ENST00000447696 GRIN2BQ13224 1484 aa42.13■■■■■ 4.34
MRPL28-205ENST00000447696 SNAPC4Q5SXM2 1469 aa42.09■■■■■ 4.33
MRPL28-205ENST00000447696 MAGI1Q96QZ7 1491 aaPredicted RBP42.08■■■■■ 4.33
MRPL28-205ENST00000447696 GAPVD1Q14C86 1478 aa42.06■■■■■ 4.32
MRPL28-205ENST00000447696 ABCA5Q8WWZ7 1642 aa42.03■■■■■ 4.32
MRPL28-205ENST00000447696 PBRM1Q86U86 1689 aa41.96■■■■■ 4.31
MRPL28-205ENST00000447696 SYNJ2O15056 1496 aa41.9■■■■■ 4.3
MRPL28-205ENST00000447696 CHMP7Q8WUX9 453 aaPredicted RBP41.86■■■■■ 4.29
MRPL28-205ENST00000447696 CLASP1Q7Z460 1538 aa41.8■■■■■ 4.28
MRPL28-205ENST00000447696 ERICH3Q5RHP9 1530 aa41.68■■■■■ 4.26
MRPL28-205ENST00000447696 ADAMTS12P58397 1594 aa41.66■■■■■ 4.26
MRPL28-205ENST00000447696 FHAD1B1AJZ9 1412 aa41.59■■■■■ 4.25
MRPL28-205ENST00000447696 GRIN2AQ12879 1464 aa41.58■■■■■ 4.25
MRPL28-205ENST00000447696 AEBP2Q6ZN18 517 aaPredicted RBP41.46■■■■■ 4.23
MRPL28-205ENST00000447696 NUP160Q12769 1436 aa41.44■■■■■ 4.22
MRPL28-205ENST00000447696 KIF27Q86VH2 1401 aa41.41■■■■■ 4.22
MRPL28-205ENST00000447696 CEP170Q5SW79 1584 aa41.36■■■■■ 4.21
MRPL28-205ENST00000447696 IGF1RP08069 1367 aa41.26■■■■■ 4.2
MRPL28-205ENST00000447696 CUL7Q14999 1698 aa41.21■■■■■ 4.19
MRPL28-205ENST00000447696 SHROOM2Q13796 1616 aa41.15■■■■■ 4.18
MRPL28-205ENST00000447696 RUSC2Q8N2Y8 1516 aa41.05■■■■■ 4.16
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms