RNA–Protein interactions for RNA: ENST00000439176.5

ERCC8-203, Transcript of ERCC excision repair 8, CSA ubiquitin ligase complex subunit, humanhuman

TSL 5

Gene ERCC8, Length 684 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC8-203ENST00000439176 AEBP2Q6ZN18 517 aaPredicted RBP21.1■□□□□ 0.97
ERCC8-203ENST00000439176 CHIC1Q5VXU3 224 aa19.74■□□□□ 0.75
ERCC8-203ENST00000439176 SENP3Q9H4L4 574 aaPredicted RBP18.13■□□□□ 0.49
ERCC8-203ENST00000439176 PHF23Q9BUL5 403 aaPredicted RBP17.79■□□□□ 0.44
ERCC8-203ENST00000439176 FOXD1Q16676 465 aa16.97■□□□□ 0.31
ERCC8-203ENST00000439176 POTEDQ86YR6 584 aa16.94■□□□□ 0.3
ERCC8-203ENST00000439176 NISCHQ9Y2I1 1504 aa16.77■□□□□ 0.28
ERCC8-203ENST00000439176 MSH5O43196 834 aa16.16■□□□□ 0.18
ERCC8-203ENST00000439176 PIAS4Q8N2W9 510 aaPredicted RBP15.72■□□□□ 0.11
ERCC8-203ENST00000439176 PPP6R1Q9UPN7 881 aa15.33■□□□□ 0.04
ERCC8-203ENST00000439176 PLPPR3Q6T4P5 718 aa15.32■□□□□ 0.04
ERCC8-203ENST00000439176 ADRA2BP18089 450 aa15.27■□□□□ 0.04
ERCC8-203ENST00000439176 CCDC180Q9P1Z9 1646 aa15.03■□□□□ -0
ERCC8-203ENST00000439176 ABCC9O60706 1549 aa15.02■□□□□ -0
ERCC8-203ENST00000439176 RB1CC1Q8TDY2 1594 aa14.33□□□□□ -0.12
ERCC8-203ENST00000439176 CACNB1Q02641 598 aaPredicted RBP14.31□□□□□ -0.12
ERCC8-203ENST00000439176 DCAF8L2P0C7V8 631 aa14.26□□□□□ -0.13
ERCC8-203ENST00000439176 DMRT2Q9Y5R5 561 aa14.25□□□□□ -0.13
ERCC8-203ENST00000439176 NACADO15069 1562 aa14.24□□□□□ -0.13
ERCC8-203ENST00000439176 MAPK8IP2Q13387 824 aaPredicted RBP14.23□□□□□ -0.13
ERCC8-203ENST00000439176 MYO15BQ96JP2 1530 aa14.05□□□□□ -0.16
ERCC8-203ENST00000439176 DNAJC5BQ9UF47 199 aa14.03□□□□□ -0.16
ERCC8-203ENST00000439176 PABPN1Q86U42 306 aaKnown RBP eCLIP14.01□□□□□ -0.17
ERCC8-203ENST00000439176 SCAF1Q9H7N4 1312 aaKnown RBP13.97□□□□□ -0.17
ERCC8-203ENST00000439176 UNC13AQ9UPW8 1703 aa13.9□□□□□ -0.18
ERCC8-203ENST00000439176 ZCCHC6Q5VYS8 1495 aaKnown RBP13.88□□□□□ -0.19
ERCC8-203ENST00000439176 DCAF1Q9Y4B6 1507 aa13.86□□□□□ -0.19
ERCC8-203ENST00000439176 BICRAQ9NZM4 1560 aa13.83□□□□□ -0.2
ERCC8-203ENST00000439176 DCAF8L1A6NGE4 600 aa13.78□□□□□ -0.2
ERCC8-203ENST00000439176 SHROOM4Q9ULL8 1493 aa13.74□□□□□ -0.21
ERCC8-203ENST00000439176 RNF39Q9H2S5 420 aa13.71□□□□□ -0.21
ERCC8-203ENST00000439176 SCRIBQ14160 1630 aa13.68□□□□□ -0.22
ERCC8-203ENST00000439176 CC2D2AQ9P2K1 1620 aa13.56□□□□□ -0.24
ERCC8-203ENST00000439176 CECR2Q9BXF3 1484 aa13.55□□□□□ -0.24
ERCC8-203ENST00000439176 EIF4G1Q04637 1599 aaKnown RBP13.54□□□□□ -0.24
ERCC8-203ENST00000439176 PPP4R3CPQ6ZMV5 832 aa13.48□□□□□ -0.25
ERCC8-203ENST00000439176 C1QBPQ07021 282 aaKnown RBP13.47□□□□□ -0.25
ERCC8-203ENST00000439176 HOXD11P31277 338 aaPredicted RBP13.44□□□□□ -0.26
ERCC8-203ENST00000439176 RNF216Q9NWF9 866 aaPredicted RBP13.17□□□□□ -0.3
ERCC8-203ENST00000439176 POTEHQ6S545 545 aa13.15□□□□□ -0.3
ERCC8-203ENST00000439176 CNKSR2Q8WXI2 1034 aa13.15□□□□□ -0.3
ERCC8-203ENST00000439176 NCAPD3P42695 1498 aa13.15□□□□□ -0.3
ERCC8-203ENST00000439176 ATAD2BQ9ULI0 1458 aa13.09□□□□□ -0.31
ERCC8-203ENST00000439176 SMARCA2P51531 1590 aa13.08□□□□□ -0.32
ERCC8-203ENST00000439176 NCBP3Q53F19 620 aaKnown RBP13.06□□□□□ -0.32
ERCC8-203ENST00000439176 SMARCA4P51532 1647 aa13.06□□□□□ -0.32
ERCC8-203ENST00000439176 BAZ1AQ9NRL2 1556 aaPredicted RBP13.03□□□□□ -0.32
ERCC8-203ENST00000439176 ERCC6Q03468 1493 aa13.03□□□□□ -0.32
ERCC8-203ENST00000439176 HMGXB3Q12766 1538 aa13.03□□□□□ -0.32
ERCC8-203ENST00000439176 KCNA4P22459 653 aa13.01□□□□□ -0.33
ERCC8-203ENST00000439176 BAZ1BQ9UIG0 1483 aaKnown RBP12.99□□□□□ -0.33
ERCC8-203ENST00000439176 CUX2O14529 1486 aa12.97□□□□□ -0.33
ERCC8-203ENST00000439176 DNAJC5Q9H3Z4 198 aa12.95□□□□□ -0.34
ERCC8-203ENST00000439176 PEG3Q9GZU2 1588 aa12.94□□□□□ -0.34
ERCC8-203ENST00000439176 NPM3O75607 178 aaKnown RBP12.91□□□□□ -0.34
ERCC8-203ENST00000439176 MROH2BQ7Z745 1585 aa12.89□□□□□ -0.35
ERCC8-203ENST00000439176 NESP48681 1621 aa12.88□□□□□ -0.35
ERCC8-203ENST00000439176 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.87□□□□□ -0.35
ERCC8-203ENST00000439176 LAMC3Q9Y6N6 1575 aa12.84□□□□□ -0.35
ERCC8-203ENST00000439176 PDS5BQ9NTI5 1447 aa12.82□□□□□ -0.36
ERCC8-203ENST00000439176 CADPSQ9ULU8 1353 aa12.77□□□□□ -0.37
ERCC8-203ENST00000439176 WIZO95785 1651 aa12.73□□□□□ -0.37
ERCC8-203ENST00000439176 THOC2Q8NI27 1593 aaKnown RBP12.73□□□□□ -0.37
ERCC8-203ENST00000439176 KIF21AQ7Z4S6 1674 aa12.7□□□□□ -0.38
ERCC8-203ENST00000439176 RSF1Q96T23 1441 aaPredicted RBP12.66□□□□□ -0.38
ERCC8-203ENST00000439176 MRC2Q9UBG0 1479 aa12.65□□□□□ -0.38
ERCC8-203ENST00000439176 CEP164Q9UPV0 1460 aa12.62□□□□□ -0.39
ERCC8-203ENST00000439176 DSG3P32926 999 aa12.61□□□□□ -0.39
ERCC8-203ENST00000439176 WDR62O43379 1518 aa12.6□□□□□ -0.39
ERCC8-203ENST00000439176 TOP2AP11388 1531 aaKnown RBP12.6□□□□□ -0.39
ERCC8-203ENST00000439176 CFTRP13569 1480 aa12.59□□□□□ -0.39
ERCC8-203ENST00000439176 FANCD2Q9BXW9 1451 aa12.59□□□□□ -0.39
ERCC8-203ENST00000439176 CAPN15O75808 1086 aa12.57□□□□□ -0.4
ERCC8-203ENST00000439176 SPINK5Q9NQ38 1064 aaPredicted RBP12.52□□□□□ -0.41
ERCC8-203ENST00000439176 U3KPZ7 1027 aaPredicted RBP12.48□□□□□ -0.41
ERCC8-203ENST00000439176 CCDC88BA6NC98 1476 aa12.46□□□□□ -0.41
ERCC8-203ENST00000439176 URB2Q14146 1524 aaKnown RBP12.45□□□□□ -0.42
ERCC8-203ENST00000439176 OSCARQ8IYS5 282 aa12.44□□□□□ -0.42
ERCC8-203ENST00000439176 PRDM2Q13029 1718 aa12.42□□□□□ -0.42
ERCC8-203ENST00000439176 TRIM41Q8WV44 630 aa12.42□□□□□ -0.42
ERCC8-203ENST00000439176 ABCC8Q09428 1581 aa12.39□□□□□ -0.43
ERCC8-203ENST00000439176 IFT140Q96RY7 1462 aa12.38□□□□□ -0.43
ERCC8-203ENST00000439176 TOPBP1Q92547 1522 aa12.35□□□□□ -0.43
ERCC8-203ENST00000439176 SLC4A1APQ9BWU0 796 aaKnown RBP12.31□□□□□ -0.44
ERCC8-203ENST00000439176 DNMBPQ6XZF7 1577 aa12.3□□□□□ -0.44
ERCC8-203ENST00000439176 ZNF608Q9ULD9 1512 aaPredicted RBP12.3□□□□□ -0.44
ERCC8-203ENST00000439176 SLC4A2P04920 1241 aa12.26□□□□□ -0.45
ERCC8-203ENST00000439176 EIF4G3O43432 1585 aaKnown RBP12.22□□□□□ -0.45
ERCC8-203ENST00000439176 AQRO60306 1485 aaKnown RBP eCLIP12.22□□□□□ -0.45
ERCC8-203ENST00000439176 ABCB7O75027 752 aa12.22□□□□□ -0.45
ERCC8-203ENST00000439176 FBLN2P98095 1184 aa12.22□□□□□ -0.45
ERCC8-203ENST00000439176 POLA1P09884 1462 aaPredicted RBP12.21□□□□□ -0.45
ERCC8-203ENST00000439176 SOGA1O94964 1423 aa12.21□□□□□ -0.45
ERCC8-203ENST00000439176 TRHP20396 242 aaPredicted RBP12.2□□□□□ -0.46
ERCC8-203ENST00000439176 TARBP1Q13395 1621 aaKnown RBP12.19□□□□□ -0.46
ERCC8-203ENST00000439176 SUPT5HO00267 1087 aaKnown RBP12.19□□□□□ -0.46
ERCC8-203ENST00000439176 RAD54L2Q9Y4B4 1467 aa12.17□□□□□ -0.46
ERCC8-203ENST00000439176 TDRD9Q8NDG6 1382 aaKnown RBP12.17□□□□□ -0.46
ERCC8-203ENST00000439176 RIMBP3CA6NJZ7 1639 aa12.16□□□□□ -0.46
ERCC8-203ENST00000439176 RIMBP3BA6NNM3 1639 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms