RNA–Protein interactions for RNA: ENST00000439027.1

AC011228.1-201, humanhuman

TSL 1 (best) BASIC

Gene AC011228.1, Length 757 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AC011228.1-201ENST00000439027 AEBP2Q6ZN18 517 aaPredicted RBP24.05■■□□□ 1.44
AC011228.1-201ENST00000439027 CHIC1Q5VXU3 224 aa23.13■■□□□ 1.29
AC011228.1-201ENST00000439027 NISCHQ9Y2I1 1504 aa22.72■■□□□ 1.23
AC011228.1-201ENST00000439027 SENP3Q9H4L4 574 aaPredicted RBP20.48■□□□□ 0.87
AC011228.1-201ENST00000439027 ABCC9O60706 1549 aa20.43■□□□□ 0.86
AC011228.1-201ENST00000439027 CCDC180Q9P1Z9 1646 aa20.31■□□□□ 0.84
AC011228.1-201ENST00000439027 PHF23Q9BUL5 403 aaPredicted RBP20.29■□□□□ 0.84
AC011228.1-201ENST00000439027 RB1CC1Q8TDY2 1594 aa19.38■□□□□ 0.69
AC011228.1-201ENST00000439027 DCAF8L2P0C7V8 631 aa19.37■□□□□ 0.69
AC011228.1-201ENST00000439027 NACADO15069 1562 aa19.24■□□□□ 0.67
AC011228.1-201ENST00000439027 DNAJC5BQ9UF47 199 aa19.16■□□□□ 0.66
AC011228.1-201ENST00000439027 PABPN1Q86U42 306 aaKnown RBP eCLIP19.08■□□□□ 0.64
AC011228.1-201ENST00000439027 FOXD1Q16676 465 aa19.05■□□□□ 0.64
AC011228.1-201ENST00000439027 MYO15BQ96JP2 1530 aa18.95■□□□□ 0.62
AC011228.1-201ENST00000439027 UNC13AQ9UPW8 1703 aa18.88■□□□□ 0.61
AC011228.1-201ENST00000439027 ZCCHC6Q5VYS8 1495 aaKnown RBP18.8■□□□□ 0.6
AC011228.1-201ENST00000439027 BICRAQ9NZM4 1560 aa18.79■□□□□ 0.6
AC011228.1-201ENST00000439027 DCAF1Q9Y4B6 1507 aa18.72■□□□□ 0.59
AC011228.1-201ENST00000439027 PLPPR3Q6T4P5 718 aa18.62■□□□□ 0.57
AC011228.1-201ENST00000439027 SCRIBQ14160 1630 aa18.6■□□□□ 0.57
AC011228.1-201ENST00000439027 SHROOM4Q9ULL8 1493 aa18.52■□□□□ 0.55
AC011228.1-201ENST00000439027 CC2D2AQ9P2K1 1620 aa18.39■□□□□ 0.53
AC011228.1-201ENST00000439027 CECR2Q9BXF3 1484 aa18.39■□□□□ 0.53
AC011228.1-201ENST00000439027 EIF4G1Q04637 1599 aaKnown RBP18.34■□□□□ 0.53
AC011228.1-201ENST00000439027 PPP6R1Q9UPN7 881 aa18.03■□□□□ 0.48
AC011228.1-201ENST00000439027 ADRA2BP18089 450 aa17.99■□□□□ 0.47
AC011228.1-201ENST00000439027 PIAS4Q8N2W9 510 aaPredicted RBP17.87■□□□□ 0.45
AC011228.1-201ENST00000439027 NCAPD3P42695 1498 aa17.78■□□□□ 0.44
AC011228.1-201ENST00000439027 ATAD2BQ9ULI0 1458 aa17.75■□□□□ 0.43
AC011228.1-201ENST00000439027 MSH5O43196 834 aa17.71■□□□□ 0.43
AC011228.1-201ENST00000439027 SMARCA4P51532 1647 aa17.7■□□□□ 0.42
AC011228.1-201ENST00000439027 SMARCA2P51531 1590 aa17.68■□□□□ 0.42
AC011228.1-201ENST00000439027 ERCC6Q03468 1493 aa17.65■□□□□ 0.42
AC011228.1-201ENST00000439027 BAZ1AQ9NRL2 1556 aaPredicted RBP17.63■□□□□ 0.41
AC011228.1-201ENST00000439027 HMGXB3Q12766 1538 aa17.62■□□□□ 0.41
AC011228.1-201ENST00000439027 BAZ1BQ9UIG0 1483 aaKnown RBP17.59■□□□□ 0.41
AC011228.1-201ENST00000439027 DNAJC5Q9H3Z4 198 aa17.58■□□□□ 0.4
AC011228.1-201ENST00000439027 CUX2O14529 1486 aa17.54■□□□□ 0.4
AC011228.1-201ENST00000439027 NESP48681 1621 aa17.53■□□□□ 0.4
AC011228.1-201ENST00000439027 MROH2BQ7Z745 1585 aa17.52■□□□□ 0.39
AC011228.1-201ENST00000439027 PEG3Q9GZU2 1588 aa17.49■□□□□ 0.39
AC011228.1-201ENST00000439027 LAMC3Q9Y6N6 1575 aa17.36■□□□□ 0.37
AC011228.1-201ENST00000439027 PDS5BQ9NTI5 1447 aa17.32■□□□□ 0.36
AC011228.1-201ENST00000439027 WIZO95785 1651 aa17.29■□□□□ 0.36
AC011228.1-201ENST00000439027 CADPSQ9ULU8 1353 aa17.28■□□□□ 0.36
AC011228.1-201ENST00000439027 THOC2Q8NI27 1593 aaKnown RBP17.27■□□□□ 0.35
AC011228.1-201ENST00000439027 KIF21AQ7Z4S6 1674 aa17.24■□□□□ 0.35
AC011228.1-201ENST00000439027 RSF1Q96T23 1441 aaPredicted RBP17.18■□□□□ 0.34
AC011228.1-201ENST00000439027 MRC2Q9UBG0 1479 aa17.15■□□□□ 0.34
AC011228.1-201ENST00000439027 CEP164Q9UPV0 1460 aa17.09■□□□□ 0.33
AC011228.1-201ENST00000439027 FANCD2Q9BXW9 1451 aa17.08■□□□□ 0.32
AC011228.1-201ENST00000439027 TOP2AP11388 1531 aaKnown RBP17.07■□□□□ 0.32
AC011228.1-201ENST00000439027 WDR62O43379 1518 aa17.06■□□□□ 0.32
AC011228.1-201ENST00000439027 CFTRP13569 1480 aa17.05■□□□□ 0.32
AC011228.1-201ENST00000439027 CCDC88BA6NC98 1476 aa16.93■□□□□ 0.3
AC011228.1-201ENST00000439027 URB2Q14146 1524 aaKnown RBP16.91■□□□□ 0.3
AC011228.1-201ENST00000439027 TRIM41Q8WV44 630 aa16.9■□□□□ 0.3
AC011228.1-201ENST00000439027 OSCARQ8IYS5 282 aa16.84■□□□□ 0.29
AC011228.1-201ENST00000439027 PRDM2Q13029 1718 aa16.8■□□□□ 0.28
AC011228.1-201ENST00000439027 POTEDQ86YR6 584 aa16.79■□□□□ 0.28
AC011228.1-201ENST00000439027 IFT140Q96RY7 1462 aa16.75■□□□□ 0.27
AC011228.1-201ENST00000439027 TOPBP1Q92547 1522 aa16.74■□□□□ 0.27
AC011228.1-201ENST00000439027 ZNF608Q9ULD9 1512 aaPredicted RBP16.72■□□□□ 0.27
AC011228.1-201ENST00000439027 ABCC8Q09428 1581 aa16.71■□□□□ 0.27
AC011228.1-201ENST00000439027 DNMBPQ6XZF7 1577 aa16.66■□□□□ 0.26
AC011228.1-201ENST00000439027 AQRO60306 1485 aaKnown RBP eCLIP16.61■□□□□ 0.25
AC011228.1-201ENST00000439027 FBLN2P98095 1184 aa16.58■□□□□ 0.24
AC011228.1-201ENST00000439027 EIF4G3O43432 1585 aaKnown RBP16.58■□□□□ 0.24
AC011228.1-201ENST00000439027 POLA1P09884 1462 aaPredicted RBP16.57■□□□□ 0.24
AC011228.1-201ENST00000439027 SUPT5HO00267 1087 aaKnown RBP16.57■□□□□ 0.24
AC011228.1-201ENST00000439027 TARBP1Q13395 1621 aaKnown RBP16.55■□□□□ 0.24
AC011228.1-201ENST00000439027 RAD54L2Q9Y4B4 1467 aa16.54■□□□□ 0.24
AC011228.1-201ENST00000439027 SOGA1O94964 1423 aa16.54■□□□□ 0.24
AC011228.1-201ENST00000439027 RIMBP3CA6NJZ7 1639 aa16.52■□□□□ 0.24
AC011228.1-201ENST00000439027 RIMBP3BA6NNM3 1639 aa16.52■□□□□ 0.24
AC011228.1-201ENST00000439027 TDRD9Q8NDG6 1382 aaKnown RBP16.52■□□□□ 0.24
AC011228.1-201ENST00000439027 RIMBP3Q9UFD9 1639 aa16.52■□□□□ 0.24
AC011228.1-201ENST00000439027 FGD5Q6ZNL6 1462 aa16.48■□□□□ 0.23
AC011228.1-201ENST00000439027 ARHGEF11O15085 1522 aa16.48■□□□□ 0.23
AC011228.1-201ENST00000439027 SCAF1Q9H7N4 1312 aaKnown RBP16.47■□□□□ 0.23
AC011228.1-201ENST00000439027 CYB5RLQ6IPT4 315 aa16.47■□□□□ 0.23
AC011228.1-201ENST00000439027 CHD1O14646 1710 aa16.46■□□□□ 0.23
AC011228.1-201ENST00000439027 CUX1P39880 1505 aa16.45■□□□□ 0.22
AC011228.1-201ENST00000439027 MAPK8IP2Q13387 824 aaPredicted RBP16.44■□□□□ 0.22
AC011228.1-201ENST00000439027 CHMP7Q8WUX9 453 aaPredicted RBP16.43■□□□□ 0.22
AC011228.1-201ENST00000439027 SNAPC4Q5SXM2 1469 aa16.41■□□□□ 0.22
AC011228.1-201ENST00000439027 GRIN2BQ13224 1484 aa16.37■□□□□ 0.21
AC011228.1-201ENST00000439027 WDR97A6NE52 1622 aa16.36■□□□□ 0.21
AC011228.1-201ENST00000439027 PPP4R3CPQ6ZMV5 832 aa16.35■□□□□ 0.21
AC011228.1-201ENST00000439027 MAGI1Q96QZ7 1491 aaPredicted RBP16.35■□□□□ 0.21
AC011228.1-201ENST00000439027 ARAP1Q96P48 1450 aa16.33■□□□□ 0.2
AC011228.1-201ENST00000439027 GAPVD1Q14C86 1478 aa16.32■□□□□ 0.2
AC011228.1-201ENST00000439027 TRHP20396 242 aaPredicted RBP16.31■□□□□ 0.2
AC011228.1-201ENST00000439027 SYNJ2O15056 1496 aa16.3■□□□□ 0.2
AC011228.1-201ENST00000439027 SYNJ1O43426 1573 aa16.29■□□□□ 0.2
AC011228.1-201ENST00000439027 DMRT2Q9Y5R5 561 aa16.28■□□□□ 0.2
AC011228.1-201ENST00000439027 ABCA10Q8WWZ4 1543 aa16.28■□□□□ 0.2
AC011228.1-201ENST00000439027 WRNQ14191 1432 aaPredicted RBP eCLIP16.27■□□□□ 0.19
AC011228.1-201ENST00000439027 CLASP1Q7Z460 1538 aa16.26■□□□□ 0.19
AC011228.1-201ENST00000439027 PBRM1Q86U86 1689 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms