RNA–Protein interactions for RNA: ENST00000438014.5

R3HDM1-208, Transcript of R3H domain containing 1, humanhuman

TSL 5

Gene R3HDM1, Length 582 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
R3HDM1-208ENST00000438014 CHIC1Q5VXU3 224 aa24.33■■□□□ 1.49
R3HDM1-208ENST00000438014 AEBP2Q6ZN18 517 aaPredicted RBP24.19■■□□□ 1.46
R3HDM1-208ENST00000438014 PHF23Q9BUL5 403 aaPredicted RBP21.46■■□□□ 1.03
R3HDM1-208ENST00000438014 NISCHQ9Y2I1 1504 aa21.07■□□□□ 0.96
R3HDM1-208ENST00000438014 SENP3Q9H4L4 574 aaPredicted RBP20.45■□□□□ 0.86
R3HDM1-208ENST00000438014 PLPPR3Q6T4P5 718 aa20.09■□□□□ 0.81
R3HDM1-208ENST00000438014 ABCC9O60706 1549 aa19.64■□□□□ 0.73
R3HDM1-208ENST00000438014 CCDC180Q9P1Z9 1646 aa19.05■□□□□ 0.64
R3HDM1-208ENST00000438014 DNAJC5BQ9UF47 199 aa18.93■□□□□ 0.62
R3HDM1-208ENST00000438014 FOXD1Q16676 465 aa18.87■□□□□ 0.61
R3HDM1-208ENST00000438014 ADRA2BP18089 450 aa18.77■□□□□ 0.6
R3HDM1-208ENST00000438014 PPP6R1Q9UPN7 881 aa18.7■□□□□ 0.58
R3HDM1-208ENST00000438014 RB1CC1Q8TDY2 1594 aa18.46■□□□□ 0.55
R3HDM1-208ENST00000438014 PABPN1Q86U42 306 aaKnown RBP eCLIP18.27■□□□□ 0.52
R3HDM1-208ENST00000438014 NACADO15069 1562 aa18.22■□□□□ 0.51
R3HDM1-208ENST00000438014 DNAJC5Q9H3Z4 198 aa18.17■□□□□ 0.5
R3HDM1-208ENST00000438014 DCAF8L2P0C7V8 631 aa18.16■□□□□ 0.5
R3HDM1-208ENST00000438014 KCNA4P22459 653 aa18.16■□□□□ 0.5
R3HDM1-208ENST00000438014 PIAS4Q8N2W9 510 aaPredicted RBP17.99■□□□□ 0.47
R3HDM1-208ENST00000438014 BICRAQ9NZM4 1560 aa17.87■□□□□ 0.45
R3HDM1-208ENST00000438014 UNC13AQ9UPW8 1703 aa17.86■□□□□ 0.45
R3HDM1-208ENST00000438014 MYO15BQ96JP2 1530 aa17.82■□□□□ 0.44
R3HDM1-208ENST00000438014 PPP4R3CPQ6ZMV5 832 aa17.79■□□□□ 0.44
R3HDM1-208ENST00000438014 CECR2Q9BXF3 1484 aa17.77■□□□□ 0.44
R3HDM1-208ENST00000438014 EHMT2Q96KQ7 1210 aa17.75■□□□□ 0.43
R3HDM1-208ENST00000438014 SHROOM4Q9ULL8 1493 aa17.68■□□□□ 0.42
R3HDM1-208ENST00000438014 CC2D2AQ9P2K1 1620 aa17.66■□□□□ 0.42
R3HDM1-208ENST00000438014 NCBP3Q53F19 620 aaKnown RBP17.54■□□□□ 0.4
R3HDM1-208ENST00000438014 EIF4G1Q04637 1599 aaKnown RBP17.51■□□□□ 0.39
R3HDM1-208ENST00000438014 SLC4A1APQ9BWU0 796 aaKnown RBP17.44■□□□□ 0.38
R3HDM1-208ENST00000438014 DCAF1Q9Y4B6 1507 aa17.38■□□□□ 0.37
R3HDM1-208ENST00000438014 SCRIBQ14160 1630 aa17.33■□□□□ 0.37
R3HDM1-208ENST00000438014 ZCCHC6Q5VYS8 1495 aaKnown RBP17.31■□□□□ 0.36
R3HDM1-208ENST00000438014 NPM3O75607 178 aaKnown RBP17.26■□□□□ 0.35
R3HDM1-208ENST00000438014 CSRNP3Q8WYN3 585 aa17.2■□□□□ 0.34
R3HDM1-208ENST00000438014 SCAF1Q9H7N4 1312 aaKnown RBP17.18■□□□□ 0.34
R3HDM1-208ENST00000438014 CUX2O14529 1486 aa17.18■□□□□ 0.34
R3HDM1-208ENST00000438014 MSH5O43196 834 aa17.15■□□□□ 0.34
R3HDM1-208ENST00000438014 CNKSR2Q8WXI2 1034 aa17.13■□□□□ 0.33
R3HDM1-208ENST00000438014 ERCC6Q03468 1493 aa17.04■□□□□ 0.32
R3HDM1-208ENST00000438014 NCAPD3P42695 1498 aa16.86■□□□□ 0.29
R3HDM1-208ENST00000438014 TRIM41Q8WV44 630 aa16.82■□□□□ 0.28
R3HDM1-208ENST00000438014 MAPK8IP2Q13387 824 aaPredicted RBP16.79■□□□□ 0.28
R3HDM1-208ENST00000438014 ZBTB22O15209 634 aa16.71■□□□□ 0.27
R3HDM1-208ENST00000438014 ATAD2BQ9ULI0 1458 aa16.71■□□□□ 0.27
R3HDM1-208ENST00000438014 NESP48681 1621 aa16.69■□□□□ 0.26
R3HDM1-208ENST00000438014 SMARCA2P51531 1590 aa16.64■□□□□ 0.25
R3HDM1-208ENST00000438014 HMGXB3Q12766 1538 aa16.62■□□□□ 0.25
R3HDM1-208ENST00000438014 RNF216Q9NWF9 866 aaPredicted RBP16.62■□□□□ 0.25
R3HDM1-208ENST00000438014 THOC2Q8NI27 1593 aaKnown RBP16.56■□□□□ 0.24
R3HDM1-208ENST00000438014 PDS5BQ9NTI5 1447 aa16.53■□□□□ 0.24
R3HDM1-208ENST00000438014 FOXD4L1Q9NU39 408 aa16.53■□□□□ 0.24
R3HDM1-208ENST00000438014 BAZ1BQ9UIG0 1483 aaKnown RBP16.52■□□□□ 0.23
R3HDM1-208ENST00000438014 LAMC3Q9Y6N6 1575 aa16.51■□□□□ 0.23
R3HDM1-208ENST00000438014 SMARCA4P51532 1647 aa16.49■□□□□ 0.23
R3HDM1-208ENST00000438014 OSCARQ8IYS5 282 aa16.42■□□□□ 0.22
R3HDM1-208ENST00000438014 DMRT2Q9Y5R5 561 aa16.42■□□□□ 0.22
R3HDM1-208ENST00000438014 BAZ1AQ9NRL2 1556 aaPredicted RBP16.39■□□□□ 0.21
R3HDM1-208ENST00000438014 KIF21AQ7Z4S6 1674 aa16.37■□□□□ 0.21
R3HDM1-208ENST00000438014 HOXD11P31277 338 aaPredicted RBP16.36■□□□□ 0.21
R3HDM1-208ENST00000438014 CADPSQ9ULU8 1353 aa16.36■□□□□ 0.21
R3HDM1-208ENST00000438014 PEG3Q9GZU2 1588 aa16.35■□□□□ 0.21
R3HDM1-208ENST00000438014 MRC2Q9UBG0 1479 aa16.35■□□□□ 0.21
R3HDM1-208ENST00000438014 WDR62O43379 1518 aa16.28■□□□□ 0.2
R3HDM1-208ENST00000438014 MROH2BQ7Z745 1585 aa16.2■□□□□ 0.18
R3HDM1-208ENST00000438014 CEP164Q9UPV0 1460 aa16.18■□□□□ 0.18
R3HDM1-208ENST00000438014 FANCD2Q9BXW9 1451 aa16.12■□□□□ 0.17
R3HDM1-208ENST00000438014 SLC4A2P04920 1241 aa16.11■□□□□ 0.17
R3HDM1-208ENST00000438014 RIMBP3CA6NJZ7 1639 aa16.06■□□□□ 0.16
R3HDM1-208ENST00000438014 RIMBP3BA6NNM3 1639 aa16.06■□□□□ 0.16
R3HDM1-208ENST00000438014 RIMBP3Q9UFD9 1639 aa16.06■□□□□ 0.16
R3HDM1-208ENST00000438014 TRHP20396 242 aaPredicted RBP16.05■□□□□ 0.16
R3HDM1-208ENST00000438014 CYB5RLQ6IPT4 315 aa16.04■□□□□ 0.16
R3HDM1-208ENST00000438014 CFTRP13569 1480 aa16.02■□□□□ 0.15
R3HDM1-208ENST00000438014 ARHGEF11O15085 1522 aa15.99■□□□□ 0.15
R3HDM1-208ENST00000438014 URB2Q14146 1524 aaKnown RBP15.98■□□□□ 0.15
R3HDM1-208ENST00000438014 MYCNP04198 464 aaPredicted RBP15.94■□□□□ 0.14
R3HDM1-208ENST00000438014 WIZO95785 1651 aa15.93■□□□□ 0.14
R3HDM1-208ENST00000438014 IFT140Q96RY7 1462 aa15.91■□□□□ 0.14
R3HDM1-208ENST00000438014 ATXN8OSP0DMR3 200 aa15.89■□□□□ 0.13
R3HDM1-208ENST00000438014 ZNF608Q9ULD9 1512 aaPredicted RBP15.87■□□□□ 0.13
R3HDM1-208ENST00000438014 ILDR1Q86SU0 546 aaPredicted RBP15.86■□□□□ 0.13
R3HDM1-208ENST00000438014 ARAP1Q96P48 1450 aa15.8■□□□□ 0.12
R3HDM1-208ENST00000438014 FBLN2P98095 1184 aa15.8■□□□□ 0.12
R3HDM1-208ENST00000438014 RSF1Q96T23 1441 aaPredicted RBP15.78■□□□□ 0.12
R3HDM1-208ENST00000438014 ABCC8Q09428 1581 aa15.75■□□□□ 0.11
R3HDM1-208ENST00000438014 TOP2AP11388 1531 aaKnown RBP15.74■□□□□ 0.11
R3HDM1-208ENST00000438014 TOPBP1Q92547 1522 aa15.73■□□□□ 0.11
R3HDM1-208ENST00000438014 AQRO60306 1485 aaKnown RBP eCLIP15.71■□□□□ 0.11
R3HDM1-208ENST00000438014 DCAF8L1A6NGE4 600 aa15.7■□□□□ 0.1
R3HDM1-208ENST00000438014 EIF4G3O43432 1585 aaKnown RBP15.7■□□□□ 0.1
R3HDM1-208ENST00000438014 CHD1O14646 1710 aa15.64■□□□□ 0.09
R3HDM1-208ENST00000438014 PRDM2Q13029 1718 aa15.63■□□□□ 0.09
R3HDM1-208ENST00000438014 CHMP7Q8WUX9 453 aaPredicted RBP15.62■□□□□ 0.09
R3HDM1-208ENST00000438014 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.62■□□□□ 0.09
R3HDM1-208ENST00000438014 CCDC88BA6NC98 1476 aa15.61■□□□□ 0.09
R3HDM1-208ENST00000438014 DNMBPQ6XZF7 1577 aa15.61■□□□□ 0.09
R3HDM1-208ENST00000438014 TARBP1Q13395 1621 aaKnown RBP15.57■□□□□ 0.08
R3HDM1-208ENST00000438014 TDRD9Q8NDG6 1382 aaKnown RBP15.56■□□□□ 0.08
R3HDM1-208ENST00000438014 POLA1P09884 1462 aaPredicted RBP15.53■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms