RNA–Protein interactions for RNA: ENST00000433298.5

LRCH3-205, Transcript of leucine rich repeats and calponin homology domain containing 3, humanhuman

TSL 5

Gene LRCH3, Length 977 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3-205ENST00000433298 AEBP2Q6ZN18 517 aaPredicted RBP21.78■■□□□ 1.08
LRCH3-205ENST00000433298 CHIC1Q5VXU3 224 aa20.88■□□□□ 0.93
LRCH3-205ENST00000433298 NISCHQ9Y2I1 1504 aa19.23■□□□□ 0.67
LRCH3-205ENST00000433298 SENP3Q9H4L4 574 aaPredicted RBP18.72■□□□□ 0.59
LRCH3-205ENST00000433298 PHF23Q9BUL5 403 aaPredicted RBP18.43■□□□□ 0.54
LRCH3-205ENST00000433298 ABCC9O60706 1549 aa18.42■□□□□ 0.54
LRCH3-205ENST00000433298 DNAJC5BQ9UF47 199 aa17.91■□□□□ 0.46
LRCH3-205ENST00000433298 CCDC180Q9P1Z9 1646 aa17.5■□□□□ 0.39
LRCH3-205ENST00000433298 FOXD1Q16676 465 aa17.33■□□□□ 0.36
LRCH3-205ENST00000433298 PABPN1Q86U42 306 aaKnown RBP eCLIP17.09■□□□□ 0.33
LRCH3-205ENST00000433298 RB1CC1Q8TDY2 1594 aa17.06■□□□□ 0.32
LRCH3-205ENST00000433298 DNAJC5Q9H3Z4 198 aa16.87■□□□□ 0.29
LRCH3-205ENST00000433298 DCAF8L2P0C7V8 631 aa16.82■□□□□ 0.28
LRCH3-205ENST00000433298 PLPPR3Q6T4P5 718 aa16.8■□□□□ 0.28
LRCH3-205ENST00000433298 UNC13AQ9UPW8 1703 aa16.74■□□□□ 0.27
LRCH3-205ENST00000433298 NACADO15069 1562 aa16.72■□□□□ 0.27
LRCH3-205ENST00000433298 BICRAQ9NZM4 1560 aa16.61■□□□□ 0.25
LRCH3-205ENST00000433298 CECR2Q9BXF3 1484 aa16.6■□□□□ 0.25
LRCH3-205ENST00000433298 CC2D2AQ9P2K1 1620 aa16.52■□□□□ 0.24
LRCH3-205ENST00000433298 MSH5O43196 834 aa16.31■□□□□ 0.2
LRCH3-205ENST00000433298 PIAS4Q8N2W9 510 aaPredicted RBP16.29■□□□□ 0.2
LRCH3-205ENST00000433298 EIF4G1Q04637 1599 aaKnown RBP16.27■□□□□ 0.2
LRCH3-205ENST00000433298 PPP6R1Q9UPN7 881 aa16.24■□□□□ 0.19
LRCH3-205ENST00000433298 ADRA2BP18089 450 aa16.23■□□□□ 0.19
LRCH3-205ENST00000433298 MYO15BQ96JP2 1530 aa16.13■□□□□ 0.17
LRCH3-205ENST00000433298 SHROOM4Q9ULL8 1493 aa16.12■□□□□ 0.17
LRCH3-205ENST00000433298 SCRIBQ14160 1630 aa16.1■□□□□ 0.17
LRCH3-205ENST00000433298 TRIM41Q8WV44 630 aa16.05■□□□□ 0.16
LRCH3-205ENST00000433298 CUX2O14529 1486 aa16■□□□□ 0.15
LRCH3-205ENST00000433298 ERCC6Q03468 1493 aa15.92■□□□□ 0.14
LRCH3-205ENST00000433298 ZCCHC6Q5VYS8 1495 aaKnown RBP15.77■□□□□ 0.11
LRCH3-205ENST00000433298 DCAF1Q9Y4B6 1507 aa15.7■□□□□ 0.1
LRCH3-205ENST00000433298 POTEDQ86YR6 584 aa15.62■□□□□ 0.09
LRCH3-205ENST00000433298 NESP48681 1621 aa15.61■□□□□ 0.09
LRCH3-205ENST00000433298 THOC2Q8NI27 1593 aaKnown RBP15.49■□□□□ 0.07
LRCH3-205ENST00000433298 SMARCA2P51531 1590 aa15.47■□□□□ 0.07
LRCH3-205ENST00000433298 NCAPD3P42695 1498 aa15.45■□□□□ 0.06
LRCH3-205ENST00000433298 ATAD2BQ9ULI0 1458 aa15.36■□□□□ 0.05
LRCH3-205ENST00000433298 KIF21AQ7Z4S6 1674 aa15.35■□□□□ 0.05
LRCH3-205ENST00000433298 BAZ1AQ9NRL2 1556 aaPredicted RBP15.27■□□□□ 0.03
LRCH3-205ENST00000433298 HMGXB3Q12766 1538 aa15.26■□□□□ 0.03
LRCH3-205ENST00000433298 OSCARQ8IYS5 282 aa15.23■□□□□ 0.03
LRCH3-205ENST00000433298 LAMC3Q9Y6N6 1575 aa15.23■□□□□ 0.03
LRCH3-205ENST00000433298 BAZ1BQ9UIG0 1483 aaKnown RBP15.21■□□□□ 0.03
LRCH3-205ENST00000433298 PDS5BQ9NTI5 1447 aa15.19■□□□□ 0.02
LRCH3-205ENST00000433298 SMARCA4P51532 1647 aa15.18■□□□□ 0.02
LRCH3-205ENST00000433298 RIMBP3CA6NJZ7 1639 aa15.14■□□□□ 0.01
LRCH3-205ENST00000433298 RIMBP3BA6NNM3 1639 aa15.14■□□□□ 0.01
LRCH3-205ENST00000433298 RIMBP3Q9UFD9 1639 aa15.14■□□□□ 0.01
LRCH3-205ENST00000433298 TRHP20396 242 aaPredicted RBP15.14■□□□□ 0.01
LRCH3-205ENST00000433298 MRC2Q9UBG0 1479 aa15.14■□□□□ 0.01
LRCH3-205ENST00000433298 WDR62O43379 1518 aa15.09■□□□□ 0.01
LRCH3-205ENST00000433298 SCAF1Q9H7N4 1312 aaKnown RBP15.02■□□□□ -0
LRCH3-205ENST00000433298 CYB5RLQ6IPT4 315 aa15.02■□□□□ -0
LRCH3-205ENST00000433298 CADPSQ9ULU8 1353 aa15□□□□□ -0.01
LRCH3-205ENST00000433298 ARHGEF11O15085 1522 aa14.99□□□□□ -0.01
LRCH3-205ENST00000433298 CEP164Q9UPV0 1460 aa14.95□□□□□ -0.02
LRCH3-205ENST00000433298 PEG3Q9GZU2 1588 aa14.91□□□□□ -0.02
LRCH3-205ENST00000433298 MROH2BQ7Z745 1585 aa14.88□□□□□ -0.03
LRCH3-205ENST00000433298 FANCD2Q9BXW9 1451 aa14.87□□□□□ -0.03
LRCH3-205ENST00000433298 MAPK8IP2Q13387 824 aaPredicted RBP14.85□□□□□ -0.03
LRCH3-205ENST00000433298 ARAP1Q96P48 1450 aa14.82□□□□□ -0.04
LRCH3-205ENST00000433298 DMRT2Q9Y5R5 561 aa14.81□□□□□ -0.04
LRCH3-205ENST00000433298 URB2Q14146 1524 aaKnown RBP14.81□□□□□ -0.04
LRCH3-205ENST00000433298 ZNF608Q9ULD9 1512 aaPredicted RBP14.78□□□□□ -0.04
LRCH3-205ENST00000433298 FBLN2P98095 1184 aa14.72□□□□□ -0.05
LRCH3-205ENST00000433298 WIZO95785 1651 aa14.71□□□□□ -0.06
LRCH3-205ENST00000433298 PPP4R3CPQ6ZMV5 832 aa14.69□□□□□ -0.06
LRCH3-205ENST00000433298 CHD1O14646 1710 aa14.69□□□□□ -0.06
LRCH3-205ENST00000433298 ILDR1Q86SU0 546 aaPredicted RBP14.66□□□□□ -0.06
LRCH3-205ENST00000433298 CFTRP13569 1480 aa14.64□□□□□ -0.07
LRCH3-205ENST00000433298 IFT140Q96RY7 1462 aa14.63□□□□□ -0.07
LRCH3-205ENST00000433298 EIF4G3O43432 1585 aaKnown RBP14.62□□□□□ -0.07
LRCH3-205ENST00000433298 AQRO60306 1485 aaKnown RBP eCLIP14.57□□□□□ -0.082e-6■■□□□ 13.9
LRCH3-205ENST00000433298 RSF1Q96T23 1441 aaPredicted RBP14.57□□□□□ -0.08
LRCH3-205ENST00000433298 TOPBP1Q92547 1522 aa14.51□□□□□ -0.09
LRCH3-205ENST00000433298 PRDM2Q13029 1718 aa14.45□□□□□ -0.1
LRCH3-205ENST00000433298 CNKSR2Q8WXI2 1034 aa14.43□□□□□ -0.1
LRCH3-205ENST00000433298 CLASP1Q7Z460 1538 aa14.41□□□□□ -0.1
LRCH3-205ENST00000433298 TARBP1Q13395 1621 aaKnown RBP14.4□□□□□ -0.1
LRCH3-205ENST00000433298 CHMP7Q8WUX9 453 aaPredicted RBP14.39□□□□□ -0.11
LRCH3-205ENST00000433298 SNAPC4Q5SXM2 1469 aa14.38□□□□□ -0.11
LRCH3-205ENST00000433298 TDRD9Q8NDG6 1382 aaKnown RBP14.37□□□□□ -0.11
LRCH3-205ENST00000433298 TOP2AP11388 1531 aaKnown RBP14.37□□□□□ -0.11
LRCH3-205ENST00000433298 GAPVD1Q14C86 1478 aa14.37□□□□□ -0.11
LRCH3-205ENST00000433298 DNMBPQ6XZF7 1577 aa14.36□□□□□ -0.11
LRCH3-205ENST00000433298 RAD54L2Q9Y4B4 1467 aa14.36□□□□□ -0.11
LRCH3-205ENST00000433298 SYNJ1O43426 1573 aa14.35□□□□□ -0.11
LRCH3-205ENST00000433298 ABCC8Q09428 1581 aa14.31□□□□□ -0.12
LRCH3-205ENST00000433298 KDM4FA0A1W2PPD8 638 aa14.31□□□□□ -0.12
LRCH3-205ENST00000433298 HOXD11P31277 338 aaPredicted RBP14.31□□□□□ -0.12
LRCH3-205ENST00000433298 POLA1P09884 1462 aaPredicted RBP14.31□□□□□ -0.12
LRCH3-205ENST00000433298 CCDC88BA6NC98 1476 aa14.27□□□□□ -0.12
LRCH3-205ENST00000433298 RNF216Q9NWF9 866 aaPredicted RBP14.27□□□□□ -0.13
LRCH3-205ENST00000433298 ERCC6L2Q5T890 1561 aa14.26□□□□□ -0.13
LRCH3-205ENST00000433298 NCBP3Q53F19 620 aaKnown RBP14.26□□□□□ -0.13
LRCH3-205ENST00000433298 SOGA1O94964 1423 aa14.25□□□□□ -0.13
LRCH3-205ENST00000433298 DCAF8L1A6NGE4 600 aa14.25□□□□□ -0.13
LRCH3-205ENST00000433298 KIF13AQ9H1H9 1805 aa14.24□□□□□ -0.13
LRCH3-205ENST00000433298 MAGI1Q96QZ7 1491 aaPredicted RBP14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms