RNA–Protein interactions for RNA: ENST00000430617.6

ATG4B-212, Transcript of autophagy related 4B cysteine peptidase, humanhuman

TSL 3

Gene ATG4B, Length 623 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4B-212ENST00000430617 NISCHQ9Y2I1 1504 aa25.96■■□□□ 1.75
ATG4B-212ENST00000430617 ABCC9O60706 1549 aa24.37■■□□□ 1.49
ATG4B-212ENST00000430617 CCDC180Q9P1Z9 1646 aa23.7■■□□□ 1.39
ATG4B-212ENST00000430617 DNAJC5BQ9UF47 199 aa23.56■■□□□ 1.36
ATG4B-212ENST00000430617 RB1CC1Q8TDY2 1594 aa22.85■■□□□ 1.25
ATG4B-212ENST00000430617 UNC13AQ9UPW8 1703 aa22.61■■□□□ 1.21
ATG4B-212ENST00000430617 PABPN1Q86U42 306 aaKnown RBP eCLIP22.53■■□□□ 1.2
ATG4B-212ENST00000430617 NACADO15069 1562 aa22.5■■□□□ 1.19
ATG4B-212ENST00000430617 BICRAQ9NZM4 1560 aa22.31■■□□□ 1.16
ATG4B-212ENST00000430617 DCAF8L2P0C7V8 631 aa22.16■■□□□ 1.14
ATG4B-212ENST00000430617 DNAJC5Q9H3Z4 198 aa22.09■■□□□ 1.13
ATG4B-212ENST00000430617 CC2D2AQ9P2K1 1620 aa22.04■■□□□ 1.12
ATG4B-212ENST00000430617 CECR2Q9BXF3 1484 aa22■■□□□ 1.11
ATG4B-212ENST00000430617 MYO15BQ96JP2 1530 aa21.89■■□□□ 1.09
ATG4B-212ENST00000430617 EIF4G1Q04637 1599 aaKnown RBP21.77■■□□□ 1.08
ATG4B-212ENST00000430617 SHROOM4Q9ULL8 1493 aa21.74■■□□□ 1.07
ATG4B-212ENST00000430617 SCRIBQ14160 1630 aa21.55■■□□□ 1.04
ATG4B-212ENST00000430617 DCAF1Q9Y4B6 1507 aa21.36■■□□□ 1.01
ATG4B-212ENST00000430617 ZCCHC6Q5VYS8 1495 aaKnown RBP21.35■■□□□ 1.01
ATG4B-212ENST00000430617 CUX2O14529 1486 aa21.25■□□□□ 0.99
ATG4B-212ENST00000430617 ERCC6Q03468 1493 aa21.03■□□□□ 0.96
ATG4B-212ENST00000430617 TRIM41Q8WV44 630 aa20.82■□□□□ 0.92
ATG4B-212ENST00000430617 NESP48681 1621 aa20.77■□□□□ 0.92
ATG4B-212ENST00000430617 NCAPD3P42695 1498 aa20.75■□□□□ 0.91
ATG4B-212ENST00000430617 THOC2Q8NI27 1593 aaKnown RBP20.74■□□□□ 0.91
ATG4B-212ENST00000430617 ATAD2BQ9ULI0 1458 aa20.61■□□□□ 0.89
ATG4B-212ENST00000430617 KIF21AQ7Z4S6 1674 aa20.58■□□□□ 0.89
ATG4B-212ENST00000430617 HMGXB3Q12766 1538 aa20.56■□□□□ 0.88
ATG4B-212ENST00000430617 SMARCA2P51531 1590 aa20.52■□□□□ 0.88
ATG4B-212ENST00000430617 SMARCA4P51532 1647 aa20.47■□□□□ 0.87
ATG4B-212ENST00000430617 LAMC3Q9Y6N6 1575 aa20.45■□□□□ 0.86
ATG4B-212ENST00000430617 BAZ1BQ9UIG0 1483 aaKnown RBP20.35■□□□□ 0.85
ATG4B-212ENST00000430617 BAZ1AQ9NRL2 1556 aaPredicted RBP20.33■□□□□ 0.84
ATG4B-212ENST00000430617 PDS5BQ9NTI5 1447 aa20.26■□□□□ 0.83
ATG4B-212ENST00000430617 PEG3Q9GZU2 1588 aa20.25■□□□□ 0.83
ATG4B-212ENST00000430617 WDR62O43379 1518 aa20.21■□□□□ 0.83
ATG4B-212ENST00000430617 MRC2Q9UBG0 1479 aa20.19■□□□□ 0.82
ATG4B-212ENST00000430617 RIMBP3CA6NJZ7 1639 aa20.11■□□□□ 0.81
ATG4B-212ENST00000430617 RIMBP3BA6NNM3 1639 aa20.11■□□□□ 0.81
ATG4B-212ENST00000430617 RIMBP3Q9UFD9 1639 aa20.11■□□□□ 0.81
ATG4B-212ENST00000430617 OSCARQ8IYS5 282 aa20.1■□□□□ 0.81
ATG4B-212ENST00000430617 CADPSQ9ULU8 1353 aa20.06■□□□□ 0.8
ATG4B-212ENST00000430617 MROH2BQ7Z745 1585 aa20.04■□□□□ 0.8
ATG4B-212ENST00000430617 CEP164Q9UPV0 1460 aa19.96■□□□□ 0.79
ATG4B-212ENST00000430617 ARHGEF11O15085 1522 aa19.9■□□□□ 0.78
ATG4B-212ENST00000430617 FANCD2Q9BXW9 1451 aa19.88■□□□□ 0.77
ATG4B-212ENST00000430617 WIZO95785 1651 aa19.84■□□□□ 0.77
ATG4B-212ENST00000430617 URB2Q14146 1524 aaKnown RBP19.81■□□□□ 0.76
ATG4B-212ENST00000430617 TRHP20396 242 aaPredicted RBP19.73■□□□□ 0.75
ATG4B-212ENST00000430617 CYB5RLQ6IPT4 315 aa19.73■□□□□ 0.75
ATG4B-212ENST00000430617 CFTRP13569 1480 aa19.71■□□□□ 0.75
ATG4B-212ENST00000430617 ZNF608Q9ULD9 1512 aaPredicted RBP19.7■□□□□ 0.74
ATG4B-212ENST00000430617 CHD1O14646 1710 aa19.68■□□□□ 0.74
ATG4B-212ENST00000430617 PRDM2Q13029 1718 aa19.68■□□□□ 0.74
ATG4B-212ENST00000430617 AEBP2Q6ZN18 517 aaPredicted RBP19.67■□□□□ 0.74
ATG4B-212ENST00000430617 ARAP1Q96P48 1450 aa19.65■□□□□ 0.74
ATG4B-212ENST00000430617 EIF4G3O43432 1585 aaKnown RBP19.58■□□□□ 0.73
ATG4B-212ENST00000430617 IFT140Q96RY7 1462 aa19.55■□□□□ 0.72
ATG4B-212ENST00000430617 TOPBP1Q92547 1522 aa19.45■□□□□ 0.7
ATG4B-212ENST00000430617 RSF1Q96T23 1441 aaPredicted RBP19.44■□□□□ 0.7
ATG4B-212ENST00000430617 TOP2AP11388 1531 aaKnown RBP19.42■□□□□ 0.7
ATG4B-212ENST00000430617 TARBP1Q13395 1621 aaKnown RBP19.4■□□□□ 0.7
ATG4B-212ENST00000430617 AQRO60306 1485 aaKnown RBP eCLIP19.39■□□□□ 0.692e-11■■■□□ 18.5
ATG4B-212ENST00000430617 FBLN2P98095 1184 aa19.34■□□□□ 0.69
ATG4B-212ENST00000430617 DNMBPQ6XZF7 1577 aa19.32■□□□□ 0.68
ATG4B-212ENST00000430617 CLASP1Q7Z460 1538 aa19.31■□□□□ 0.68
ATG4B-212ENST00000430617 ABCC8Q09428 1581 aa19.27■□□□□ 0.67
ATG4B-212ENST00000430617 CCDC88BA6NC98 1476 aa19.22■□□□□ 0.67
ATG4B-212ENST00000430617 POLA1P09884 1462 aaPredicted RBP19.19■□□□□ 0.66
ATG4B-212ENST00000430617 SYNJ1O43426 1573 aa19.18■□□□□ 0.66
ATG4B-212ENST00000430617 SNAPC4Q5SXM2 1469 aa19.16■□□□□ 0.66
ATG4B-212ENST00000430617 RAD54L2Q9Y4B4 1467 aa19.16■□□□□ 0.66
ATG4B-212ENST00000430617 TDRD9Q8NDG6 1382 aaKnown RBP19.12■□□□□ 0.65
ATG4B-212ENST00000430617 GAPVD1Q14C86 1478 aa19.1■□□□□ 0.65
ATG4B-212ENST00000430617 KIF13AQ9H1H9 1805 aa19.1■□□□□ 0.65
ATG4B-212ENST00000430617 WDR97A6NE52 1622 aa19.05■□□□□ 0.64
ATG4B-212ENST00000430617 CHMP7Q8WUX9 453 aaPredicted RBP19.05■□□□□ 0.64
ATG4B-212ENST00000430617 MAGI1Q96QZ7 1491 aaPredicted RBP19.04■□□□□ 0.64
ATG4B-212ENST00000430617 SOGA1O94964 1423 aa19.04■□□□□ 0.64
ATG4B-212ENST00000430617 PBRM1Q86U86 1689 aa19.03■□□□□ 0.64
ATG4B-212ENST00000430617 ERCC6L2Q5T890 1561 aa19.02■□□□□ 0.63
ATG4B-212ENST00000430617 ILDR1Q86SU0 546 aaPredicted RBP19.01■□□□□ 0.63
ATG4B-212ENST00000430617 SYNJ2O15056 1496 aa19■□□□□ 0.63
ATG4B-212ENST00000430617 FGD5Q6ZNL6 1462 aa18.97■□□□□ 0.63
ATG4B-212ENST00000430617 GRIN2BQ13224 1484 aa18.96■□□□□ 0.63
ATG4B-212ENST00000430617 CUX1P39880 1505 aa18.87■□□□□ 0.61
ATG4B-212ENST00000430617 CEP170Q5SW79 1584 aa18.85■□□□□ 0.61
ATG4B-212ENST00000430617 KDM4FA0A1W2PPD8 638 aa18.82■□□□□ 0.6
ATG4B-212ENST00000430617 ABCA5Q8WWZ7 1642 aa18.82■□□□□ 0.6
ATG4B-212ENST00000430617 SHROOM2Q13796 1616 aa18.81■□□□□ 0.6
ATG4B-212ENST00000430617 GRIN2AQ12879 1464 aa18.75■□□□□ 0.59
ATG4B-212ENST00000430617 TSPOAP1O95153 1857 aa18.75■□□□□ 0.59
ATG4B-212ENST00000430617 KDM6BO15054 1643 aa18.71■□□□□ 0.59
ATG4B-212ENST00000430617 ADAMTS12P58397 1594 aa18.7■□□□□ 0.58
ATG4B-212ENST00000430617 NUP160Q12769 1436 aa18.7■□□□□ 0.58
ATG4B-212ENST00000430617 DIP2BQ9P265 1576 aa18.69■□□□□ 0.58
ATG4B-212ENST00000430617 ABCC10Q5T3U5 1492 aa18.68■□□□□ 0.58
ATG4B-212ENST00000430617 ABCA10Q8WWZ4 1543 aa18.68■□□□□ 0.58
ATG4B-212ENST00000430617 FAM69CQ0P6D2 419 aa18.66■□□□□ 0.58
ATG4B-212ENST00000430617 MAPKBP1O60336 1514 aa18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms