RNA–Protein interactions for RNA: ENST00000425444.1

SGCE-203, Transcript of sarcoglycan epsilon, humanhuman

TSL 3

Gene SGCE, Length 597 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGCE-203ENST00000425444 NISCHQ9Y2I1 1504 aa31.53■■■□□ 2.64
SGCE-203ENST00000425444 ABCC9O60706 1549 aa29.43■■■□□ 2.3
SGCE-203ENST00000425444 CCDC180Q9P1Z9 1646 aa28.58■■■□□ 2.17
SGCE-203ENST00000425444 DNAJC5BQ9UF47 199 aa28.3■■■□□ 2.12
SGCE-203ENST00000425444 RB1CC1Q8TDY2 1594 aa27.62■■■□□ 2.01
SGCE-203ENST00000425444 PABPN1Q86U42 306 aaKnown RBP eCLIP27.32■■□□□ 1.96
SGCE-203ENST00000425444 NACADO15069 1562 aa27.23■■□□□ 1.95
SGCE-203ENST00000425444 DCAF8L2P0C7V8 631 aa27.1■■□□□ 1.93
SGCE-203ENST00000425444 UNC13AQ9UPW8 1703 aa26.97■■□□□ 1.91
SGCE-203ENST00000425444 BICRAQ9NZM4 1560 aa26.83■■□□□ 1.89
SGCE-203ENST00000425444 CECR2Q9BXF3 1484 aa26.58■■□□□ 1.85
SGCE-203ENST00000425444 MYO15BQ96JP2 1530 aa26.56■■□□□ 1.84
SGCE-203ENST00000425444 DNAJC5Q9H3Z4 198 aa26.55■■□□□ 1.84
SGCE-203ENST00000425444 CC2D2AQ9P2K1 1620 aa26.5■■□□□ 1.83
SGCE-203ENST00000425444 SHROOM4Q9ULL8 1493 aa26.36■■□□□ 1.81
SGCE-203ENST00000425444 EIF4G1Q04637 1599 aaKnown RBP26.25■■□□□ 1.79
SGCE-203ENST00000425444 SCRIBQ14160 1630 aa26.06■■□□□ 1.76
SGCE-203ENST00000425444 DCAF1Q9Y4B6 1507 aa25.95■■□□□ 1.74
SGCE-203ENST00000425444 ZCCHC6Q5VYS8 1495 aaKnown RBP25.94■■□□□ 1.74
SGCE-203ENST00000425444 CUX2O14529 1486 aa25.64■■□□□ 1.69
SGCE-203ENST00000425444 ERCC6Q03468 1493 aa25.48■■□□□ 1.67
SGCE-203ENST00000425444 NCAPD3P42695 1498 aa25.15■■□□□ 1.62
SGCE-203ENST00000425444 TRIM41Q8WV44 630 aa25.14■■□□□ 1.62
SGCE-203ENST00000425444 NESP48681 1621 aa25.04■■□□□ 1.6
SGCE-203ENST00000425444 ATAD2BQ9ULI0 1458 aa24.99■■□□□ 1.59
SGCE-203ENST00000425444 THOC2Q8NI27 1593 aaKnown RBP24.89■■□□□ 1.58
SGCE-203ENST00000425444 HMGXB3Q12766 1538 aa24.88■■□□□ 1.57
SGCE-203ENST00000425444 SMARCA2P51531 1590 aa24.87■■□□□ 1.57
SGCE-203ENST00000425444 SMARCA4P51532 1647 aa24.75■■□□□ 1.55
SGCE-203ENST00000425444 BAZ1BQ9UIG0 1483 aaKnown RBP24.72■■□□□ 1.55
SGCE-203ENST00000425444 LAMC3Q9Y6N6 1575 aa24.71■■□□□ 1.55
SGCE-203ENST00000425444 KIF21AQ7Z4S6 1674 aa24.67■■□□□ 1.54
SGCE-203ENST00000425444 PDS5BQ9NTI5 1447 aa24.64■■□□□ 1.54
SGCE-203ENST00000425444 BAZ1AQ9NRL2 1556 aaPredicted RBP24.52■■□□□ 1.52
SGCE-203ENST00000425444 PEG3Q9GZU2 1588 aa24.48■■□□□ 1.51
SGCE-203ENST00000425444 MRC2Q9UBG0 1479 aa24.45■■□□□ 1.51
SGCE-203ENST00000425444 OSCARQ8IYS5 282 aa24.4■■□□□ 1.5
SGCE-203ENST00000425444 WDR62O43379 1518 aa24.39■■□□□ 1.49
SGCE-203ENST00000425444 CADPSQ9ULU8 1353 aa24.39■■□□□ 1.49
SGCE-203ENST00000425444 MROH2BQ7Z745 1585 aa24.29■■□□□ 1.48
SGCE-203ENST00000425444 CEP164Q9UPV0 1460 aa24.21■■□□□ 1.47
SGCE-203ENST00000425444 FANCD2Q9BXW9 1451 aa24.12■■□□□ 1.45
SGCE-203ENST00000425444 RIMBP3CA6NJZ7 1639 aa24.11■■□□□ 1.45
SGCE-203ENST00000425444 RIMBP3BA6NNM3 1639 aa24.11■■□□□ 1.45
SGCE-203ENST00000425444 RIMBP3Q9UFD9 1639 aa24.11■■□□□ 1.45
SGCE-203ENST00000425444 ARHGEF11O15085 1522 aa23.97■■□□□ 1.43
SGCE-203ENST00000425444 WIZO95785 1651 aa23.96■■□□□ 1.43
SGCE-203ENST00000425444 URB2Q14146 1524 aaKnown RBP23.95■■□□□ 1.43
SGCE-203ENST00000425444 CFTRP13569 1480 aa23.93■■□□□ 1.42
SGCE-203ENST00000425444 TRHP20396 242 aaPredicted RBP23.92■■□□□ 1.42
SGCE-203ENST00000425444 CYB5RLQ6IPT4 315 aa23.92■■□□□ 1.42
SGCE-203ENST00000425444 AEBP2Q6ZN18 517 aaPredicted RBP23.81■■□□□ 1.4
SGCE-203ENST00000425444 ZNF608Q9ULD9 1512 aaPredicted RBP23.8■■□□□ 1.4
SGCE-203ENST00000425444 IFT140Q96RY7 1462 aa23.75■■□□□ 1.39
SGCE-203ENST00000425444 ARAP1Q96P48 1450 aa23.68■■□□□ 1.38
SGCE-203ENST00000425444 RSF1Q96T23 1441 aaPredicted RBP23.61■■□□□ 1.37
SGCE-203ENST00000425444 EIF4G3O43432 1585 aaKnown RBP23.6■■□□□ 1.37
SGCE-203ENST00000425444 TOP2AP11388 1531 aaKnown RBP23.59■■□□□ 1.37
SGCE-203ENST00000425444 FBLN2P98095 1184 aa23.58■■□□□ 1.37
SGCE-203ENST00000425444 PRDM2Q13029 1718 aa23.58■■□□□ 1.37
SGCE-203ENST00000425444 CHD1O14646 1710 aa23.57■■□□□ 1.36
SGCE-203ENST00000425444 TOPBP1Q92547 1522 aa23.55■■□□□ 1.36
SGCE-203ENST00000425444 AQRO60306 1485 aaKnown RBP eCLIP23.5■■□□□ 1.35
SGCE-203ENST00000425444 ABCC8Q09428 1581 aa23.44■■□□□ 1.34
SGCE-203ENST00000425444 TARBP1Q13395 1621 aaKnown RBP23.39■■□□□ 1.33
SGCE-203ENST00000425444 DNMBPQ6XZF7 1577 aa23.39■■□□□ 1.33
SGCE-203ENST00000425444 CCDC88BA6NC98 1476 aa23.36■■□□□ 1.33
SGCE-203ENST00000425444 POLA1P09884 1462 aaPredicted RBP23.27■■□□□ 1.32
SGCE-203ENST00000425444 CLASP1Q7Z460 1538 aa23.27■■□□□ 1.32
SGCE-203ENST00000425444 TDRD9Q8NDG6 1382 aaKnown RBP23.25■■□□□ 1.31
SGCE-203ENST00000425444 CHMP7Q8WUX9 453 aaPredicted RBP23.24■■□□□ 1.31
SGCE-203ENST00000425444 RAD54L2Q9Y4B4 1467 aa23.23■■□□□ 1.31
SGCE-203ENST00000425444 SNAPC4Q5SXM2 1469 aa23.22■■□□□ 1.31
SGCE-203ENST00000425444 SYNJ1O43426 1573 aa23.21■■□□□ 1.31
SGCE-203ENST00000425444 SOGA1O94964 1423 aa23.17■■□□□ 1.3
SGCE-203ENST00000425444 GAPVD1Q14C86 1478 aa23.13■■□□□ 1.29
SGCE-203ENST00000425444 MAGI1Q96QZ7 1491 aaPredicted RBP23.11■■□□□ 1.29
SGCE-203ENST00000425444 WDR97A6NE52 1622 aa23.06■■□□□ 1.28
SGCE-203ENST00000425444 SYNJ2O15056 1496 aa23.05■■□□□ 1.28
SGCE-203ENST00000425444 GRIN2BQ13224 1484 aa23.05■■□□□ 1.28
SGCE-203ENST00000425444 FGD5Q6ZNL6 1462 aa23.02■■□□□ 1.28
SGCE-203ENST00000425444 SUPT5HO00267 1087 aaKnown RBP22.9■■□□□ 1.26
SGCE-203ENST00000425444 ERCC6L2Q5T890 1561 aa22.88■■□□□ 1.25
SGCE-203ENST00000425444 CUX1P39880 1505 aa22.87■■□□□ 1.25
SGCE-203ENST00000425444 PBRM1Q86U86 1689 aa22.87■■□□□ 1.25
SGCE-203ENST00000425444 ILDR1Q86SU0 546 aaPredicted RBP22.83■■□□□ 1.25
SGCE-203ENST00000425444 KIF13AQ9H1H9 1805 aa22.8■■□□□ 1.24
SGCE-203ENST00000425444 CEP170Q5SW79 1584 aa22.77■■□□□ 1.24
SGCE-203ENST00000425444 GRIN2AQ12879 1464 aa22.74■■□□□ 1.23
SGCE-203ENST00000425444 ABCA5Q8WWZ7 1642 aa22.71■■□□□ 1.23
SGCE-203ENST00000425444 ABCA10Q8WWZ4 1543 aa22.69■■□□□ 1.22
SGCE-203ENST00000425444 KDM4FA0A1W2PPD8 638 aa22.69■■□□□ 1.22
SGCE-203ENST00000425444 NUP160Q12769 1436 aa22.68■■□□□ 1.22
SGCE-203ENST00000425444 FAM69CQ0P6D2 419 aa22.68■■□□□ 1.22
SGCE-203ENST00000425444 SHROOM2Q13796 1616 aa22.64■■□□□ 1.21
SGCE-203ENST00000425444 ADAMTS12P58397 1594 aa22.61■■□□□ 1.21
SGCE-203ENST00000425444 ABCC10Q5T3U5 1492 aa22.6■■□□□ 1.21
SGCE-203ENST00000425444 PRG4Q92954 1404 aaPredicted RBP22.57■■□□□ 1.2
SGCE-203ENST00000425444 NPM1P06748 294 aaKnown RBP eCLIP22.57■■□□□ 1.2
SGCE-203ENST00000425444 FHAD1B1AJZ9 1412 aa22.54■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms