RNA–Protein interactions for RNA: ENST00000409292.5

LSM5-202, Transcript of LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM5, Length 538 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM5-202ENST00000409292 AEBP2Q6ZN18 517 aaPredicted RBP22.99■■□□□ 1.27
LSM5-202ENST00000409292 CHIC1Q5VXU3 224 aa22.08■■□□□ 1.13
LSM5-202ENST00000409292 SENP3Q9H4L4 574 aaPredicted RBP19.71■□□□□ 0.75
LSM5-202ENST00000409292 PHF23Q9BUL5 403 aaPredicted RBP19.41■□□□□ 0.7
LSM5-202ENST00000409292 NISCHQ9Y2I1 1504 aa19.28■□□□□ 0.68
LSM5-202ENST00000409292 FOXD1Q16676 465 aa18.26■□□□□ 0.51
LSM5-202ENST00000409292 PLPPR3Q6T4P5 718 aa17.77■□□□□ 0.44
LSM5-202ENST00000409292 ABCC9O60706 1549 aa17.56■□□□□ 0.4
LSM5-202ENST00000409292 CCDC180Q9P1Z9 1646 aa17.39■□□□□ 0.37
LSM5-202ENST00000409292 PPP6R1Q9UPN7 881 aa17.16■□□□□ 0.34
LSM5-202ENST00000409292 PIAS4Q8N2W9 510 aaPredicted RBP17.14■□□□□ 0.33
LSM5-202ENST00000409292 MSH5O43196 834 aa17.13■□□□□ 0.33
LSM5-202ENST00000409292 ADRA2BP18089 450 aa17.13■□□□□ 0.33
LSM5-202ENST00000409292 RB1CC1Q8TDY2 1594 aa16.68■□□□□ 0.26
LSM5-202ENST00000409292 NACADO15069 1562 aa16.52■□□□□ 0.24
LSM5-202ENST00000409292 DNAJC5BQ9UF47 199 aa16.51■□□□□ 0.23
LSM5-202ENST00000409292 DCAF8L2P0C7V8 631 aa16.5■□□□□ 0.23
LSM5-202ENST00000409292 PABPN1Q86U42 306 aaKnown RBP eCLIP16.33■□□□□ 0.2
LSM5-202ENST00000409292 POTEDQ86YR6 584 aa16.33■□□□□ 0.2
LSM5-202ENST00000409292 MYO15BQ96JP2 1530 aa16.22■□□□□ 0.19
LSM5-202ENST00000409292 UNC13AQ9UPW8 1703 aa16.14■□□□□ 0.17
LSM5-202ENST00000409292 BICRAQ9NZM4 1560 aa16.04■□□□□ 0.16
LSM5-202ENST00000409292 SHROOM4Q9ULL8 1493 aa15.99■□□□□ 0.15
LSM5-202ENST00000409292 DCAF1Q9Y4B6 1507 aa15.94■□□□□ 0.14
LSM5-202ENST00000409292 ZCCHC6Q5VYS8 1495 aaKnown RBP15.92■□□□□ 0.14
LSM5-202ENST00000409292 CECR2Q9BXF3 1484 aa15.86■□□□□ 0.13
LSM5-202ENST00000409292 SCAF1Q9H7N4 1312 aaKnown RBP15.83■□□□□ 0.12
LSM5-202ENST00000409292 CC2D2AQ9P2K1 1620 aa15.82■□□□□ 0.12
LSM5-202ENST00000409292 SCRIBQ14160 1630 aa15.81■□□□□ 0.12
LSM5-202ENST00000409292 EIF4G1Q04637 1599 aaKnown RBP15.75■□□□□ 0.11
LSM5-202ENST00000409292 MAPK8IP2Q13387 824 aaPredicted RBP15.66■□□□□ 0.1
LSM5-202ENST00000409292 DMRT2Q9Y5R5 561 aa15.63■□□□□ 0.09
LSM5-202ENST00000409292 PPP4R3CPQ6ZMV5 832 aa15.55■□□□□ 0.08
LSM5-202ENST00000409292 DNAJC5Q9H3Z4 198 aa15.42■□□□□ 0.06
LSM5-202ENST00000409292 ERCC6Q03468 1493 aa15.27■□□□□ 0.03
LSM5-202ENST00000409292 CNKSR2Q8WXI2 1034 aa15.26■□□□□ 0.03
LSM5-202ENST00000409292 CUX2O14529 1486 aa15.25■□□□□ 0.03
LSM5-202ENST00000409292 NCAPD3P42695 1498 aa15.23■□□□□ 0.03
LSM5-202ENST00000409292 SMARCA2P51531 1590 aa15.15■□□□□ 0.02
LSM5-202ENST00000409292 ATAD2BQ9ULI0 1458 aa15.14■□□□□ 0.01
LSM5-202ENST00000409292 HOXD11P31277 338 aaPredicted RBP15.12■□□□□ 0.01
LSM5-202ENST00000409292 HMGXB3Q12766 1538 aa15.09■□□□□ 0.01
LSM5-202ENST00000409292 NCBP3Q53F19 620 aaKnown RBP15.09■□□□□ 0.01
LSM5-202ENST00000409292 RNF216Q9NWF9 866 aaPredicted RBP15.08■□□□□ 0
LSM5-202ENST00000409292 SMARCA4P51532 1647 aa15.06■□□□□ 0
LSM5-202ENST00000409292 BAZ1BQ9UIG0 1483 aaKnown RBP15.04■□□□□ -0
LSM5-202ENST00000409292 BAZ1AQ9NRL2 1556 aaPredicted RBP15.03■□□□□ -0
LSM5-202ENST00000409292 NESP48681 1621 aa14.97□□□□□ -0.01
LSM5-202ENST00000409292 DCAF8L1A6NGE4 600 aa14.96□□□□□ -0.01
LSM5-202ENST00000409292 LAMC3Q9Y6N6 1575 aa14.93□□□□□ -0.02
LSM5-202ENST00000409292 PDS5BQ9NTI5 1447 aa14.92□□□□□ -0.02
LSM5-202ENST00000409292 PEG3Q9GZU2 1588 aa14.91□□□□□ -0.02
LSM5-202ENST00000409292 THOC2Q8NI27 1593 aaKnown RBP14.85□□□□□ -0.03
LSM5-202ENST00000409292 MROH2BQ7Z745 1585 aa14.81□□□□□ -0.04
LSM5-202ENST00000409292 CADPSQ9ULU8 1353 aa14.79□□□□□ -0.04
LSM5-202ENST00000409292 NPM3O75607 178 aaKnown RBP14.77□□□□□ -0.05
LSM5-202ENST00000409292 KIF21AQ7Z4S6 1674 aa14.77□□□□□ -0.05
LSM5-202ENST00000409292 MRC2Q9UBG0 1479 aa14.74□□□□□ -0.05
LSM5-202ENST00000409292 TRIM41Q8WV44 630 aa14.73□□□□□ -0.05
LSM5-202ENST00000409292 CEP164Q9UPV0 1460 aa14.67□□□□□ -0.06
LSM5-202ENST00000409292 WDR62O43379 1518 aa14.66□□□□□ -0.06
LSM5-202ENST00000409292 WIZO95785 1651 aa14.61□□□□□ -0.07
LSM5-202ENST00000409292 KCNA4P22459 653 aa14.61□□□□□ -0.07
LSM5-202ENST00000409292 FANCD2Q9BXW9 1451 aa14.61□□□□□ -0.07
LSM5-202ENST00000409292 OSCARQ8IYS5 282 aa14.59□□□□□ -0.07
LSM5-202ENST00000409292 RNF39Q9H2S5 420 aa14.57□□□□□ -0.08
LSM5-202ENST00000409292 CACNB1Q02641 598 aaPredicted RBP14.55□□□□□ -0.08
LSM5-202ENST00000409292 CFTRP13569 1480 aa14.55□□□□□ -0.08
LSM5-202ENST00000409292 TOP2AP11388 1531 aaKnown RBP14.49□□□□□ -0.09
LSM5-202ENST00000409292 RSF1Q96T23 1441 aaPredicted RBP14.48□□□□□ -0.09
LSM5-202ENST00000409292 URB2Q14146 1524 aaKnown RBP14.43□□□□□ -0.1
LSM5-202ENST00000409292 C1QBPQ07021 282 aaKnown RBP14.42□□□□□ -0.1
LSM5-202ENST00000409292 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.42□□□□□ -0.13e-13■■■□□ 16
LSM5-202ENST00000409292 IFT140Q96RY7 1462 aa14.38□□□□□ -0.11
LSM5-202ENST00000409292 PRDM2Q13029 1718 aa14.35□□□□□ -0.11
LSM5-202ENST00000409292 ABCC8Q09428 1581 aa14.35□□□□□ -0.11
LSM5-202ENST00000409292 CCDC88BA6NC98 1476 aa14.31□□□□□ -0.12
LSM5-202ENST00000409292 RIMBP3CA6NJZ7 1639 aa14.28□□□□□ -0.12
LSM5-202ENST00000409292 RIMBP3BA6NNM3 1639 aa14.28□□□□□ -0.12
LSM5-202ENST00000409292 TOPBP1Q92547 1522 aa14.28□□□□□ -0.12
LSM5-202ENST00000409292 RIMBP3Q9UFD9 1639 aa14.28□□□□□ -0.12
LSM5-202ENST00000409292 ZNF608Q9ULD9 1512 aaPredicted RBP14.27□□□□□ -0.12
LSM5-202ENST00000409292 ARHGEF11O15085 1522 aa14.25□□□□□ -0.13
LSM5-202ENST00000409292 FBLN2P98095 1184 aa14.24□□□□□ -0.13
LSM5-202ENST00000409292 DNMBPQ6XZF7 1577 aa14.23□□□□□ -0.13
LSM5-202ENST00000409292 CYB5RLQ6IPT4 315 aa14.23□□□□□ -0.13
LSM5-202ENST00000409292 EIF4G3O43432 1585 aaKnown RBP14.21□□□□□ -0.14
LSM5-202ENST00000409292 TRHP20396 242 aaPredicted RBP14.2□□□□□ -0.14
LSM5-202ENST00000409292 AQRO60306 1485 aaKnown RBP eCLIP14.16□□□□□ -0.14
LSM5-202ENST00000409292 POLA1P09884 1462 aaPredicted RBP14.12□□□□□ -0.15
LSM5-202ENST00000409292 SOGA1O94964 1423 aa14.12□□□□□ -0.15
LSM5-202ENST00000409292 CHD1O14646 1710 aa14.12□□□□□ -0.15
LSM5-202ENST00000409292 TARBP1Q13395 1621 aaKnown RBP14.12□□□□□ -0.15
LSM5-202ENST00000409292 CHMP7Q8WUX9 453 aaPredicted RBP14.11□□□□□ -0.15
LSM5-202ENST00000409292 U3KPZ7 1027 aaPredicted RBP14.09□□□□□ -0.15
LSM5-202ENST00000409292 WDR97A6NE52 1622 aa14.08□□□□□ -0.16
LSM5-202ENST00000409292 TDRD9Q8NDG6 1382 aaKnown RBP14.08□□□□□ -0.16
LSM5-202ENST00000409292 ARAP1Q96P48 1450 aa14.06□□□□□ -0.16
LSM5-202ENST00000409292 RAD54L2Q9Y4B4 1467 aa14.06□□□□□ -0.16
LSM5-202ENST00000409292 SYNJ1O43426 1573 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 101.9 ms