RNA–Protein interactions for RNA: ENST00000406757.2

GPC3-203, Transcript of glypican 3, humanhuman

TSL 2

Gene GPC3, Length 836 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-203ENST00000406757 AEBP2Q6ZN18 517 aaPredicted RBP21.69■■□□□ 1.06
GPC3-203ENST00000406757 CHIC1Q5VXU3 224 aa20.36■□□□□ 0.85
GPC3-203ENST00000406757 NISCHQ9Y2I1 1504 aa19.73■□□□□ 0.75
GPC3-203ENST00000406757 SENP3Q9H4L4 574 aaPredicted RBP18.53■□□□□ 0.56
GPC3-203ENST00000406757 PHF23Q9BUL5 403 aaPredicted RBP18.26■□□□□ 0.51
GPC3-203ENST00000406757 ABCC9O60706 1549 aa17.89■□□□□ 0.45
GPC3-203ENST00000406757 CCDC180Q9P1Z9 1646 aa17.71■□□□□ 0.43
GPC3-203ENST00000406757 FOXD1Q16676 465 aa17.31■□□□□ 0.36
GPC3-203ENST00000406757 RB1CC1Q8TDY2 1594 aa16.94■□□□□ 0.3
GPC3-203ENST00000406757 DNAJC5BQ9UF47 199 aa16.89■□□□□ 0.29
GPC3-203ENST00000406757 NACADO15069 1562 aa16.78■□□□□ 0.28
GPC3-203ENST00000406757 DCAF8L2P0C7V8 631 aa16.77■□□□□ 0.28
GPC3-203ENST00000406757 PABPN1Q86U42 306 aaKnown RBP eCLIP16.66■□□□□ 0.26
GPC3-203ENST00000406757 UNC13AQ9UPW8 1703 aa16.54■□□□□ 0.24
GPC3-203ENST00000406757 MYO15BQ96JP2 1530 aa16.5■□□□□ 0.23
GPC3-203ENST00000406757 BICRAQ9NZM4 1560 aa16.46■□□□□ 0.23
GPC3-203ENST00000406757 ZCCHC6Q5VYS8 1495 aaKnown RBP16.33■□□□□ 0.2
GPC3-203ENST00000406757 POTEDQ86YR6 584 aa16.32■□□□□ 0.2
GPC3-203ENST00000406757 MSH5O43196 834 aa16.29■□□□□ 0.2
GPC3-203ENST00000406757 DCAF1Q9Y4B6 1507 aa16.25■□□□□ 0.19
GPC3-203ENST00000406757 SCRIBQ14160 1630 aa16.19■□□□□ 0.18
GPC3-203ENST00000406757 SHROOM4Q9ULL8 1493 aa16.17■□□□□ 0.18
GPC3-203ENST00000406757 PLPPR3Q6T4P5 718 aa16.15■□□□□ 0.18
GPC3-203ENST00000406757 CC2D2AQ9P2K1 1620 aa16.13■□□□□ 0.17
GPC3-203ENST00000406757 CECR2Q9BXF3 1484 aa16.1■□□□□ 0.17
GPC3-203ENST00000406757 PIAS4Q8N2W9 510 aaPredicted RBP16.09■□□□□ 0.17
GPC3-203ENST00000406757 EIF4G1Q04637 1599 aaKnown RBP16.07■□□□□ 0.16
GPC3-203ENST00000406757 PPP6R1Q9UPN7 881 aa15.99■□□□□ 0.15
GPC3-203ENST00000406757 ADRA2BP18089 450 aa15.92■□□□□ 0.14
GPC3-203ENST00000406757 DNAJC5Q9H3Z4 198 aa15.55■□□□□ 0.08
GPC3-203ENST00000406757 NCAPD3P42695 1498 aa15.51■□□□□ 0.07
GPC3-203ENST00000406757 ATAD2BQ9ULI0 1458 aa15.46■□□□□ 0.07
GPC3-203ENST00000406757 ERCC6Q03468 1493 aa15.45■□□□□ 0.06
GPC3-203ENST00000406757 CUX2O14529 1486 aa15.41■□□□□ 0.06
GPC3-203ENST00000406757 SMARCA4P51532 1647 aa15.41■□□□□ 0.06
GPC3-203ENST00000406757 SMARCA2P51531 1590 aa15.39■□□□□ 0.05
GPC3-203ENST00000406757 HMGXB3Q12766 1538 aa15.37■□□□□ 0.05
GPC3-203ENST00000406757 NESP48681 1621 aa15.34■□□□□ 0.05
GPC3-203ENST00000406757 BAZ1AQ9NRL2 1556 aaPredicted RBP15.32■□□□□ 0.04
GPC3-203ENST00000406757 BAZ1BQ9UIG0 1483 aaKnown RBP15.31■□□□□ 0.04
GPC3-203ENST00000406757 PEG3Q9GZU2 1588 aa15.24■□□□□ 0.03
GPC3-203ENST00000406757 MROH2BQ7Z745 1585 aa15.22■□□□□ 0.03
GPC3-203ENST00000406757 THOC2Q8NI27 1593 aaKnown RBP15.17■□□□□ 0.02
GPC3-203ENST00000406757 LAMC3Q9Y6N6 1575 aa15.17■□□□□ 0.02
GPC3-203ENST00000406757 KIF21AQ7Z4S6 1674 aa15.11■□□□□ 0.01
GPC3-203ENST00000406757 PDS5BQ9NTI5 1447 aa15.1■□□□□ 0.01
GPC3-203ENST00000406757 CADPSQ9ULU8 1353 aa15.05■□□□□ -0
GPC3-203ENST00000406757 SUPT5HO00267 1087 aaKnown RBP15.04■□□□□ -0
GPC3-203ENST00000406757 WIZO95785 1651 aa15.03■□□□□ -0
GPC3-203ENST00000406757 RSF1Q96T23 1441 aaPredicted RBP15□□□□□ -0.01
GPC3-203ENST00000406757 MRC2Q9UBG0 1479 aa14.98□□□□□ -0.01
GPC3-203ENST00000406757 WDR62O43379 1518 aa14.94□□□□□ -0.02
GPC3-203ENST00000406757 CEP164Q9UPV0 1460 aa14.9□□□□□ -0.02
GPC3-203ENST00000406757 FANCD2Q9BXW9 1451 aa14.89□□□□□ -0.03
GPC3-203ENST00000406757 TRIM41Q8WV44 630 aa14.88□□□□□ -0.03
GPC3-203ENST00000406757 CFTRP13569 1480 aa14.85□□□□□ -0.03
GPC3-203ENST00000406757 TOP2AP11388 1531 aaKnown RBP14.82□□□□□ -0.04
GPC3-203ENST00000406757 URB2Q14146 1524 aaKnown RBP14.77□□□□□ -0.04
GPC3-203ENST00000406757 OSCARQ8IYS5 282 aa14.72□□□□□ -0.05
GPC3-203ENST00000406757 MAPK8IP2Q13387 824 aaPredicted RBP14.69□□□□□ -0.06
GPC3-203ENST00000406757 DMRT2Q9Y5R5 561 aa14.67□□□□□ -0.06
GPC3-203ENST00000406757 CCDC88BA6NC98 1476 aa14.67□□□□□ -0.06
GPC3-203ENST00000406757 PRDM2Q13029 1718 aa14.64□□□□□ -0.07
GPC3-203ENST00000406757 ZNF608Q9ULD9 1512 aaPredicted RBP14.61□□□□□ -0.07
GPC3-203ENST00000406757 IFT140Q96RY7 1462 aa14.6□□□□□ -0.07
GPC3-203ENST00000406757 TOPBP1Q92547 1522 aa14.59□□□□□ -0.07
GPC3-203ENST00000406757 SCAF1Q9H7N4 1312 aaKnown RBP14.57□□□□□ -0.08
GPC3-203ENST00000406757 RIMBP3CA6NJZ7 1639 aa14.53□□□□□ -0.08
GPC3-203ENST00000406757 RIMBP3BA6NNM3 1639 aa14.53□□□□□ -0.08
GPC3-203ENST00000406757 RIMBP3Q9UFD9 1639 aa14.53□□□□□ -0.08
GPC3-203ENST00000406757 EIF4G3O43432 1585 aaKnown RBP14.51□□□□□ -0.09
GPC3-203ENST00000406757 ABCC8Q09428 1581 aa14.51□□□□□ -0.09
GPC3-203ENST00000406757 DNMBPQ6XZF7 1577 aa14.51□□□□□ -0.09
GPC3-203ENST00000406757 ARHGEF11O15085 1522 aa14.48□□□□□ -0.09
GPC3-203ENST00000406757 AQRO60306 1485 aaKnown RBP eCLIP14.48□□□□□ -0.092e-10■□□□□ 8.9
GPC3-203ENST00000406757 TARBP1Q13395 1621 aaKnown RBP14.45□□□□□ -0.1
GPC3-203ENST00000406757 POLA1P09884 1462 aaPredicted RBP14.44□□□□□ -0.1
GPC3-203ENST00000406757 FBLN2P98095 1184 aa14.43□□□□□ -0.1
GPC3-203ENST00000406757 CYB5RLQ6IPT4 315 aa14.41□□□□□ -0.1
GPC3-203ENST00000406757 RAD54L2Q9Y4B4 1467 aa14.41□□□□□ -0.1
GPC3-203ENST00000406757 CHD1O14646 1710 aa14.41□□□□□ -0.1
GPC3-203ENST00000406757 SOGA1O94964 1423 aa14.38□□□□□ -0.11
GPC3-203ENST00000406757 TDRD9Q8NDG6 1382 aaKnown RBP14.37□□□□□ -0.11
GPC3-203ENST00000406757 ARAP1Q96P48 1450 aa14.34□□□□□ -0.11
GPC3-203ENST00000406757 FGD5Q6ZNL6 1462 aa14.33□□□□□ -0.12
GPC3-203ENST00000406757 SNAPC4Q5SXM2 1469 aa14.31□□□□□ -0.12
GPC3-203ENST00000406757 CUX1P39880 1505 aa14.31□□□□□ -0.12
GPC3-203ENST00000406757 TRHP20396 242 aaPredicted RBP14.3□□□□□ -0.12
GPC3-203ENST00000406757 CHMP7Q8WUX9 453 aaPredicted RBP14.28□□□□□ -0.12
GPC3-203ENST00000406757 WDR97A6NE52 1622 aa14.26□□□□□ -0.13
GPC3-203ENST00000406757 CLASP1Q7Z460 1538 aa14.25□□□□□ -0.13
GPC3-203ENST00000406757 GRIN2BQ13224 1484 aa14.25□□□□□ -0.13
GPC3-203ENST00000406757 MAGI1Q96QZ7 1491 aaPredicted RBP14.25□□□□□ -0.13
GPC3-203ENST00000406757 SYNJ1O43426 1573 aa14.22□□□□□ -0.13
GPC3-203ENST00000406757 SYNJ2O15056 1496 aa14.21□□□□□ -0.13
GPC3-203ENST00000406757 GAPVD1Q14C86 1478 aa14.18□□□□□ -0.14
GPC3-203ENST00000406757 PBRM1Q86U86 1689 aa14.17□□□□□ -0.14
GPC3-203ENST00000406757 ABCA10Q8WWZ4 1543 aa14.15□□□□□ -0.14
GPC3-203ENST00000406757 ABCA5Q8WWZ7 1642 aa14.13□□□□□ -0.15
GPC3-203ENST00000406757 PPP4R3CPQ6ZMV5 832 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms