RNA–Protein interactions for RNA: ENST00000404914.7

ATG4B-205, Transcript of autophagy related 4B cysteine peptidase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ATG4B, Length 2,878 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4B-205ENST00000404914 NISCHQ9Y2I1 1504 aa31.13■■■□□ 2.57
ATG4B-205ENST00000404914 CCDC180Q9P1Z9 1646 aa27.27■■□□□ 1.96
ATG4B-205ENST00000404914 SHROOM4Q9ULL8 1493 aa26.78■■□□□ 1.88
ATG4B-205ENST00000404914 SUPT5HO00267 1087 aaKnown RBP26.49■■□□□ 1.83
ATG4B-205ENST00000404914 ABCC9O60706 1549 aa26.31■■□□□ 1.8
ATG4B-205ENST00000404914 HRCP23327 699 aa26.19■■□□□ 1.78
ATG4B-205ENST00000404914 MYO15BQ96JP2 1530 aa26.16■■□□□ 1.78
ATG4B-205ENST00000404914 ZCCHC6Q5VYS8 1495 aaKnown RBP26.06■■□□□ 1.76
ATG4B-205ENST00000404914 DCAF8L2P0C7V8 631 aa25.95■■□□□ 1.75
ATG4B-205ENST00000404914 CHIC1Q5VXU3 224 aa25.94■■□□□ 1.74
ATG4B-205ENST00000404914 PCGF6Q9BYE7 350 aa25.88■■□□□ 1.73
ATG4B-205ENST00000404914 PPARGC1BQ86YN6 1023 aaKnown RBP25.84■■□□□ 1.73
ATG4B-205ENST00000404914 DCAF1Q9Y4B6 1507 aa25.63■■□□□ 1.69
ATG4B-205ENST00000404914 NACADO15069 1562 aa25.49■■□□□ 1.67
ATG4B-205ENST00000404914 RB1CC1Q8TDY2 1594 aa25.39■■□□□ 1.65
ATG4B-205ENST00000404914 LOC105371045A0A1W2PR82 267 aa25.38■■□□□ 1.65
ATG4B-205ENST00000404914 SCRIBQ14160 1630 aa25.16■■□□□ 1.62
ATG4B-205ENST00000404914 UNC13AQ9UPW8 1703 aa25.03■■□□□ 1.6
ATG4B-205ENST00000404914 TRIM26Q12899 539 aaPredicted RBP25.03■■□□□ 1.6
ATG4B-205ENST00000404914 PABPN1Q86U42 306 aaKnown RBP eCLIP24.77■■□□□ 1.56
ATG4B-205ENST00000404914 BICRAQ9NZM4 1560 aa24.75■■□□□ 1.55
ATG4B-205ENST00000404914 SCAF1Q9H7N4 1312 aaKnown RBP24.67■■□□□ 1.54
ATG4B-205ENST00000404914 ZEB1P37275 1124 aaPredicted RBP24.58■■□□□ 1.53
ATG4B-205ENST00000404914 FAM9AQ8IZU1 332 aaPredicted RBP24.53■■□□□ 1.52
ATG4B-205ENST00000404914 PELP1Q8IZL8 1130 aaKnown RBP24.48■■□□□ 1.51
ATG4B-205ENST00000404914 EHMT2Q96KQ7 1210 aa24.48■■□□□ 1.51
ATG4B-205ENST00000404914 TRIM41Q8WV44 630 aa24.45■■□□□ 1.5
ATG4B-205ENST00000404914 RSF1Q96T23 1441 aaPredicted RBP24.4■■□□□ 1.5
ATG4B-205ENST00000404914 CECR2Q9BXF3 1484 aa24.32■■□□□ 1.48
ATG4B-205ENST00000404914 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.13■■□□□ 1.45
ATG4B-205ENST00000404914 NEUROD1Q13562 356 aa24.11■■□□□ 1.45
ATG4B-205ENST00000404914 MROH2BQ7Z745 1585 aa24.1■■□□□ 1.45
ATG4B-205ENST00000404914 ACIN1Q9UKV3 1341 aaKnown RBP24.07■■□□□ 1.44
ATG4B-205ENST00000404914 SMARCA4P51532 1647 aa24.03■■□□□ 1.44
ATG4B-205ENST00000404914 BAZ1AQ9NRL2 1556 aaPredicted RBP24.02■■□□□ 1.44
ATG4B-205ENST00000404914 EIF4G1Q04637 1599 aaKnown RBP24■■□□□ 1.43
ATG4B-205ENST00000404914 CCER1Q8TC90 406 aaPredicted RBP23.97■■□□□ 1.43
ATG4B-205ENST00000404914 WIZO95785 1651 aa23.91■■□□□ 1.42
ATG4B-205ENST00000404914 GTF3C3Q9Y5Q9 886 aa23.89■■□□□ 1.42
ATG4B-205ENST00000404914 DIEXFQ68CQ4 756 aaKnown RBP23.85■■□□□ 1.41
ATG4B-205ENST00000404914 TTBK1Q5TCY1 1321 aaPredicted RBP23.82■■□□□ 1.4
ATG4B-205ENST00000404914 CC2D2AQ9P2K1 1620 aa23.77■■□□□ 1.4
ATG4B-205ENST00000404914 ATAD2BQ9ULI0 1458 aa23.73■■□□□ 1.39
ATG4B-205ENST00000404914 PEG3Q9GZU2 1588 aa23.7■■□□□ 1.38
ATG4B-205ENST00000404914 DNAJC5BQ9UF47 199 aa23.68■■□□□ 1.38
ATG4B-205ENST00000404914 CENPBP07199 599 aaPredicted RBP23.68■■□□□ 1.38
ATG4B-205ENST00000404914 SMARCA2P51531 1590 aa23.64■■□□□ 1.37
ATG4B-205ENST00000404914 BAZ1BQ9UIG0 1483 aaKnown RBP23.56■■□□□ 1.36
ATG4B-205ENST00000404914 NCAPD3P42695 1498 aa23.55■■□□□ 1.36
ATG4B-205ENST00000404914 TOP2AP11388 1531 aaKnown RBP23.54■■□□□ 1.36
ATG4B-205ENST00000404914 ABCC8Q09428 1581 aa23.51■■□□□ 1.35
ATG4B-205ENST00000404914 YTHDC1Q96MU7 727 aaKnown RBP23.5■■□□□ 1.35
ATG4B-205ENST00000404914 WRNQ14191 1432 aaPredicted RBP eCLIP23.49■■□□□ 1.35
ATG4B-205ENST00000404914 CCDC88BA6NC98 1476 aa23.49■■□□□ 1.35
ATG4B-205ENST00000404914 CEP162Q5TB80 1403 aa23.48■■□□□ 1.35
ATG4B-205ENST00000404914 HMGXB3Q12766 1538 aa23.47■■□□□ 1.35
ATG4B-205ENST00000404914 ZNF316A6NFI3 1004 aaPredicted RBP23.45■■□□□ 1.34
ATG4B-205ENST00000404914 SOGA1O94964 1423 aa23.4■■□□□ 1.34
ATG4B-205ENST00000404914 MIER1Q8N108 512 aa23.35■■□□□ 1.33
ATG4B-205ENST00000404914 RUSC2Q8N2Y8 1516 aa23.32■■□□□ 1.32
ATG4B-205ENST00000404914 MYT1Q01538 1121 aa23.31■■□□□ 1.32
ATG4B-205ENST00000404914 TNIKQ9UKE5 1360 aa23.3■■□□□ 1.32
ATG4B-205ENST00000404914 UBTFP17480 764 aaKnown RBP23.24■■□□□ 1.31
ATG4B-205ENST00000404914 HNRNPUL2Q1KMD3 747 aaKnown RBP23.21■■□□□ 1.31
ATG4B-205ENST00000404914 CSRNP3Q8WYN3 585 aa23.19■■□□□ 1.3
ATG4B-205ENST00000404914 GOLGA3Q08378 1498 aa23.05■■□□□ 1.28
ATG4B-205ENST00000404914 EEA1Q15075 1411 aa23.02■■□□□ 1.28
ATG4B-205ENST00000404914 NESP48681 1621 aa23.01■■□□□ 1.27
ATG4B-205ENST00000404914 CFTRP13569 1480 aa22.94■■□□□ 1.26
ATG4B-205ENST00000404914 CADPSQ9ULU8 1353 aa22.93■■□□□ 1.26
ATG4B-205ENST00000404914 CLIP1P30622 1438 aa22.88■■□□□ 1.25
ATG4B-205ENST00000404914 RANGAP1P46060 587 aaPredicted RBP22.86■■□□□ 1.25
ATG4B-205ENST00000404914 SUPT16HQ9Y5B9 1047 aaKnown RBP22.83■■□□□ 1.25
ATG4B-205ENST00000404914 CEP164Q9UPV0 1460 aa22.82■■□□□ 1.24
ATG4B-205ENST00000404914 VPS8Q8N3P4 1428 aa22.82■■□□□ 1.24
ATG4B-205ENST00000404914 SYNJ1O43426 1573 aa22.82■■□□□ 1.24
ATG4B-205ENST00000404914 LAMC3Q9Y6N6 1575 aa22.81■■□□□ 1.24
ATG4B-205ENST00000404914 PRDM2Q13029 1718 aa22.8■■□□□ 1.24
ATG4B-205ENST00000404914 KIF21BO75037 1637 aa22.79■■□□□ 1.24
ATG4B-205ENST00000404914 RAPGEF2Q9Y4G8 1499 aa22.75■■□□□ 1.23
ATG4B-205ENST00000404914 DHX57Q6P158 1386 aaKnown RBP22.72■■□□□ 1.23
ATG4B-205ENST00000404914 FANCD2Q9BXW9 1451 aa22.71■■□□□ 1.23
ATG4B-205ENST00000404914 APLP2Q06481 763 aa22.71■■□□□ 1.23
ATG4B-205ENST00000404914 KIF21AQ7Z4S6 1674 aa22.7■■□□□ 1.22
ATG4B-205ENST00000404914 TSHZ2Q9NRE2 1034 aa22.65■■□□□ 1.22
ATG4B-205ENST00000404914 PDS5BQ9NTI5 1447 aa22.63■■□□□ 1.21
ATG4B-205ENST00000404914 KCNH8Q96L42 1107 aa22.6■■□□□ 1.21
ATG4B-205ENST00000404914 KANK4Q5T7N3 995 aaPredicted RBP22.58■■□□□ 1.21
ATG4B-205ENST00000404914 CUX1P39880 1505 aa22.55■■□□□ 1.2
ATG4B-205ENST00000404914 CLSPNQ9HAW4 1339 aa22.54■■□□□ 1.2
ATG4B-205ENST00000404914 ERCC6Q03468 1493 aa22.53■■□□□ 1.2
ATG4B-205ENST00000404914 URB2Q14146 1524 aaKnown RBP22.5■■□□□ 1.19
ATG4B-205ENST00000404914 ARAP1Q96P48 1450 aa22.49■■□□□ 1.19
ATG4B-205ENST00000404914 TOP2BQ02880 1626 aa22.45■■□□□ 1.19
ATG4B-205ENST00000404914 BCANQ96GW7 911 aa22.45■■□□□ 1.18
ATG4B-205ENST00000404914 ANP32EQ9BTT0 268 aa22.44■■□□□ 1.18
ATG4B-205ENST00000404914 BIVM-ERCC5R4GMW8 1640 aa22.43■■□□□ 1.18
ATG4B-205ENST00000404914 TOPBP1Q92547 1522 aa22.43■■□□□ 1.18
ATG4B-205ENST00000404914 MRC2Q9UBG0 1479 aa22.4■■□□□ 1.18
ATG4B-205ENST00000404914 DNMBPQ6XZF7 1577 aa22.4■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms