RNA–Protein interactions for RNA: ENST00000395881.7

RTFDC1-203, Transcript of Protein RTF2 homolog, humanhuman

TSL 2 BASIC

Gene RTFDC1, Length 1,572 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1-203ENST00000395881 NISCHQ9Y2I1 1504 aa32.95■■■□□ 2.87
RTFDC1-203ENST00000395881 CCDC180Q9P1Z9 1646 aa29.3■■■□□ 2.28
RTFDC1-203ENST00000395881 ABCC9O60706 1549 aa28.72■■■□□ 2.19
RTFDC1-203ENST00000395881 RB1CC1Q8TDY2 1594 aa27.58■■■□□ 2.01
RTFDC1-203ENST00000395881 DCAF8L2P0C7V8 631 aa27.55■■■□□ 2
RTFDC1-203ENST00000395881 NACADO15069 1562 aa27.54■■■□□ 2
RTFDC1-203ENST00000395881 ZCCHC6Q5VYS8 1495 aaKnown RBP27.43■■□□□ 1.98
RTFDC1-203ENST00000395881 MYO15BQ96JP2 1530 aa27.36■■□□□ 1.97
RTFDC1-203ENST00000395881 DCAF1Q9Y4B6 1507 aa27.24■■□□□ 1.95
RTFDC1-203ENST00000395881 UNC13AQ9UPW8 1703 aa27.05■■□□□ 1.92
RTFDC1-203ENST00000395881 PABPN1Q86U42 306 aaKnown RBP eCLIP26.85■■□□□ 1.893e-6■■■□□ 15.3
RTFDC1-203ENST00000395881 BICRAQ9NZM4 1560 aa26.81■■□□□ 1.88
RTFDC1-203ENST00000395881 SCRIBQ14160 1630 aa26.75■■□□□ 1.87
RTFDC1-203ENST00000395881 DNAJC5BQ9UF47 199 aa26.46■■□□□ 1.83
RTFDC1-203ENST00000395881 SHROOM4Q9ULL8 1493 aa26.42■■□□□ 1.82
RTFDC1-203ENST00000395881 EIF4G1Q04637 1599 aaKnown RBP26.06■■□□□ 1.76
RTFDC1-203ENST00000395881 CC2D2AQ9P2K1 1620 aa25.98■■□□□ 1.75
RTFDC1-203ENST00000395881 CECR2Q9BXF3 1484 aa25.79■■□□□ 1.72
RTFDC1-203ENST00000395881 SMARCA4P51532 1647 aa25.58■■□□□ 1.69
RTFDC1-203ENST00000395881 BAZ1AQ9NRL2 1556 aaPredicted RBP25.52■■□□□ 1.68
RTFDC1-203ENST00000395881 ATAD2BQ9ULI0 1458 aa25.44■■□□□ 1.66
RTFDC1-203ENST00000395881 NCAPD3P42695 1498 aa25.43■■□□□ 1.66
RTFDC1-203ENST00000395881 MROH2BQ7Z745 1585 aa25.42■■□□□ 1.66
RTFDC1-203ENST00000395881 SMARCA2P51531 1590 aa25.39■■□□□ 1.65
RTFDC1-203ENST00000395881 PEG3Q9GZU2 1588 aa25.32■■□□□ 1.64
RTFDC1-203ENST00000395881 HMGXB3Q12766 1538 aa25.29■■□□□ 1.64
RTFDC1-203ENST00000395881 SUPT5HO00267 1087 aaKnown RBP25.25■■□□□ 1.63
RTFDC1-203ENST00000395881 BAZ1BQ9UIG0 1483 aaKnown RBP25.21■■□□□ 1.63
RTFDC1-203ENST00000395881 WIZO95785 1651 aa25.16■■□□□ 1.62
RTFDC1-203ENST00000395881 RSF1Q96T23 1441 aaPredicted RBP25.1■■□□□ 1.61
RTFDC1-203ENST00000395881 NESP48681 1621 aa24.87■■□□□ 1.57
RTFDC1-203ENST00000395881 TOP2AP11388 1531 aaKnown RBP24.84■■□□□ 1.57
RTFDC1-203ENST00000395881 LAMC3Q9Y6N6 1575 aa24.75■■□□□ 1.55
RTFDC1-203ENST00000395881 ERCC6Q03468 1493 aa24.71■■□□□ 1.55
RTFDC1-203ENST00000395881 CADPSQ9ULU8 1353 aa24.68■■□□□ 1.54
RTFDC1-203ENST00000395881 CCDC88BA6NC98 1476 aa24.58■■□□□ 1.52
RTFDC1-203ENST00000395881 PDS5BQ9NTI5 1447 aa24.57■■□□□ 1.52
RTFDC1-203ENST00000395881 KIF21AQ7Z4S6 1674 aa24.57■■□□□ 1.52
RTFDC1-203ENST00000395881 CFTRP13569 1480 aa24.53■■□□□ 1.52
RTFDC1-203ENST00000395881 THOC2Q8NI27 1593 aaKnown RBP24.48■■□□□ 1.51
RTFDC1-203ENST00000395881 CUX2O14529 1486 aa24.46■■□□□ 1.51
RTFDC1-203ENST00000395881 CHIC1Q5VXU3 224 aa24.43■■□□□ 1.5
RTFDC1-203ENST00000395881 FANCD2Q9BXW9 1451 aa24.39■■□□□ 1.5
RTFDC1-203ENST00000395881 PRDM2Q13029 1718 aa24.36■■□□□ 1.49
RTFDC1-203ENST00000395881 CEP164Q9UPV0 1460 aa24.35■■□□□ 1.49
RTFDC1-203ENST00000395881 MRC2Q9UBG0 1479 aa24.33■■□□□ 1.49
RTFDC1-203ENST00000395881 WDR62O43379 1518 aa24.26■■□□□ 1.47
RTFDC1-203ENST00000395881 URB2Q14146 1524 aaKnown RBP24.18■■□□□ 1.46
RTFDC1-203ENST00000395881 TOPBP1Q92547 1522 aa24.02■■□□□ 1.44
RTFDC1-203ENST00000395881 ABCC8Q09428 1581 aa23.97■■□□□ 1.43
RTFDC1-203ENST00000395881 DNMBPQ6XZF7 1577 aa23.97■■□□□ 1.43
RTFDC1-203ENST00000395881 IFT140Q96RY7 1462 aa23.85■■□□□ 1.41
RTFDC1-203ENST00000395881 CUX1P39880 1505 aa23.84■■□□□ 1.41
RTFDC1-203ENST00000395881 POLA1P09884 1462 aaPredicted RBP23.81■■□□□ 1.4
RTFDC1-203ENST00000395881 TRIM41Q8WV44 630 aa23.81■■□□□ 1.4
RTFDC1-203ENST00000395881 DNAJC5Q9H3Z4 198 aa23.8■■□□□ 1.4
RTFDC1-203ENST00000395881 ZNF608Q9ULD9 1512 aaPredicted RBP23.79■■□□□ 1.4
RTFDC1-203ENST00000395881 TARBP1Q13395 1621 aaKnown RBP23.77■■□□□ 1.4
RTFDC1-203ENST00000395881 FGD5Q6ZNL6 1462 aa23.74■■□□□ 1.39
RTFDC1-203ENST00000395881 RAD54L2Q9Y4B4 1467 aa23.73■■□□□ 1.39
RTFDC1-203ENST00000395881 SOGA1O94964 1423 aa23.71■■□□□ 1.39
RTFDC1-203ENST00000395881 EIF4G3O43432 1585 aaKnown RBP23.67■■□□□ 1.38
RTFDC1-203ENST00000395881 AQRO60306 1485 aaKnown RBP eCLIP23.64■■□□□ 1.384e-8■■□□□ 11.4
RTFDC1-203ENST00000395881 WRNQ14191 1432 aaPredicted RBP eCLIP23.64■■□□□ 1.38
RTFDC1-203ENST00000395881 SYNJ1O43426 1573 aa23.62■■□□□ 1.37
RTFDC1-203ENST00000395881 TOP2BQ02880 1626 aa23.62■■□□□ 1.37
RTFDC1-203ENST00000395881 BIVM-ERCC5R4GMW8 1640 aa23.62■■□□□ 1.37
RTFDC1-203ENST00000395881 TDRD9Q8NDG6 1382 aaKnown RBP23.59■■□□□ 1.37
RTFDC1-203ENST00000395881 WDR97A6NE52 1622 aa23.57■■□□□ 1.36
RTFDC1-203ENST00000395881 ABCA10Q8WWZ4 1543 aa23.51■■□□□ 1.35
RTFDC1-203ENST00000395881 OSCARQ8IYS5 282 aa23.47■■□□□ 1.35
RTFDC1-203ENST00000395881 ABCA5Q8WWZ7 1642 aa23.43■■□□□ 1.34
RTFDC1-203ENST00000395881 GAPVD1Q14C86 1478 aa23.43■■□□□ 1.34
RTFDC1-203ENST00000395881 GRIN2BQ13224 1484 aa23.42■■□□□ 1.34
RTFDC1-203ENST00000395881 CHD1O14646 1710 aa23.41■■□□□ 1.34
RTFDC1-203ENST00000395881 LOC105371045A0A1W2PR82 267 aa23.41■■□□□ 1.34
RTFDC1-203ENST00000395881 SNAPC4Q5SXM2 1469 aa23.41■■□□□ 1.34
RTFDC1-203ENST00000395881 PBRM1Q86U86 1689 aa23.4■■□□□ 1.34
RTFDC1-203ENST00000395881 MAGI1Q96QZ7 1491 aaPredicted RBP23.35■■□□□ 1.33
RTFDC1-203ENST00000395881 FBLN2P98095 1184 aa23.34■■□□□ 1.33
RTFDC1-203ENST00000395881 EEA1Q15075 1411 aa23.33■■□□□ 1.33
RTFDC1-203ENST00000395881 SYNJ2O15056 1496 aa23.27■■□□□ 1.32
RTFDC1-203ENST00000395881 CHMP7Q8WUX9 453 aaPredicted RBP23.27■■□□□ 1.32
RTFDC1-203ENST00000395881 FAM9AQ8IZU1 332 aaPredicted RBP23.25■■□□□ 1.31
RTFDC1-203ENST00000395881 ERICH3Q5RHP9 1530 aa23.21■■□□□ 1.31
RTFDC1-203ENST00000395881 ADAMTS12P58397 1594 aa23.2■■□□□ 1.3
RTFDC1-203ENST00000395881 FHAD1B1AJZ9 1412 aa23.15■■□□□ 1.3
RTFDC1-203ENST00000395881 KIF27Q86VH2 1401 aa23.14■■□□□ 1.3
RTFDC1-203ENST00000395881 CLASP1Q7Z460 1538 aa23.13■■□□□ 1.29
RTFDC1-203ENST00000395881 GRIN2AQ12879 1464 aa23.13■■□□□ 1.29
RTFDC1-203ENST00000395881 RIMBP3CA6NJZ7 1639 aa23.13■■□□□ 1.29
RTFDC1-203ENST00000395881 RIMBP3BA6NNM3 1639 aa23.13■■□□□ 1.29
RTFDC1-203ENST00000395881 RIMBP3Q9UFD9 1639 aa23.13■■□□□ 1.29
RTFDC1-203ENST00000395881 ARHGEF11O15085 1522 aa23.09■■□□□ 1.29
RTFDC1-203ENST00000395881 IGF1RP08069 1367 aa23.09■■□□□ 1.29
RTFDC1-203ENST00000395881 CSRNP3Q8WYN3 585 aa23.06■■□□□ 1.28
RTFDC1-203ENST00000395881 CEP170Q5SW79 1584 aa23.03■■□□□ 1.28
RTFDC1-203ENST00000395881 NUP160Q12769 1436 aa23.03■■□□□ 1.28
RTFDC1-203ENST00000395881 RUSC2Q8N2Y8 1516 aa23.01■■□□□ 1.27
RTFDC1-203ENST00000395881 CUL7Q14999 1698 aa23■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms