RNA–Protein interactions for RNA: ENST00000395840.6

RAE1-202, Transcript of ribonucleic acid export 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RAE1, Length 2,602 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1-202ENST00000395840 NISCHQ9Y2I1 1504 aa20.06■□□□□ 0.8
RAE1-202ENST00000395840 CCDC180Q9P1Z9 1646 aa17.84■□□□□ 0.45
RAE1-202ENST00000395840 ABCC9O60706 1549 aa17.16■□□□□ 0.34
RAE1-202ENST00000395840 ZCCHC6Q5VYS8 1495 aaKnown RBP16.74■□□□□ 0.27
RAE1-202ENST00000395840 NACADO15069 1562 aa16.74■□□□□ 0.27
RAE1-202ENST00000395840 MYO15BQ96JP2 1530 aa16.73■□□□□ 0.27
RAE1-202ENST00000395840 RB1CC1Q8TDY2 1594 aa16.7■□□□□ 0.26
RAE1-202ENST00000395840 DCAF1Q9Y4B6 1507 aa16.69■□□□□ 0.26
RAE1-202ENST00000395840 DCAF8L2P0C7V8 631 aa16.63■□□□□ 0.25
RAE1-202ENST00000395840 UNC13AQ9UPW8 1703 aa16.22■□□□□ 0.19
RAE1-202ENST00000395840 SCRIBQ14160 1630 aa16.17■□□□□ 0.18
RAE1-202ENST00000395840 SHROOM4Q9ULL8 1493 aa16.12■□□□□ 0.17
RAE1-202ENST00000395840 BICRAQ9NZM4 1560 aa16.09■□□□□ 0.17
RAE1-202ENST00000395840 PABPN1Q86U42 306 aaKnown RBP eCLIP16.03■□□□□ 0.16
RAE1-202ENST00000395840 EIF4G1Q04637 1599 aaKnown RBP15.69■□□□□ 0.1
RAE1-202ENST00000395840 BAZ1AQ9NRL2 1556 aaPredicted RBP15.58■□□□□ 0.08
RAE1-202ENST00000395840 CC2D2AQ9P2K1 1620 aa15.57■□□□□ 0.08
RAE1-202ENST00000395840 SMARCA4P51532 1647 aa15.53■□□□□ 0.08
RAE1-202ENST00000395840 DNAJC5BQ9UF47 199 aa15.53■□□□□ 0.08
RAE1-202ENST00000395840 CECR2Q9BXF3 1484 aa15.52■□□□□ 0.08
RAE1-202ENST00000395840 SMARCA2P51531 1590 aa15.46■□□□□ 0.07
RAE1-202ENST00000395840 PEG3Q9GZU2 1588 aa15.42■□□□□ 0.06
RAE1-202ENST00000395840 NCAPD3P42695 1498 aa15.41■□□□□ 0.06
RAE1-202ENST00000395840 MROH2BQ7Z745 1585 aa15.41■□□□□ 0.06
RAE1-202ENST00000395840 ATAD2BQ9ULI0 1458 aa15.4■□□□□ 0.06
RAE1-202ENST00000395840 PELP1Q8IZL8 1130 aaKnown RBP15.39■□□□□ 0.05
RAE1-202ENST00000395840 HMGXB3Q12766 1538 aa15.36■□□□□ 0.05
RAE1-202ENST00000395840 RSF1Q96T23 1441 aaPredicted RBP15.31■□□□□ 0.04
RAE1-202ENST00000395840 BAZ1BQ9UIG0 1483 aaKnown RBP15.31■□□□□ 0.04
RAE1-202ENST00000395840 WIZO95785 1651 aa15.24■□□□□ 0.03
RAE1-202ENST00000395840 HRCP23327 699 aa15.21■□□□□ 0.03
RAE1-202ENST00000395840 TOP2AP11388 1531 aaKnown RBP15.17■□□□□ 0.02
RAE1-202ENST00000395840 LAMC3Q9Y6N6 1575 aa15□□□□□ -0.01
RAE1-202ENST00000395840 SUPT5HO00267 1087 aaKnown RBP14.99□□□□□ -0.01
RAE1-202ENST00000395840 CADPSQ9ULU8 1353 aa14.96□□□□□ -0.02
RAE1-202ENST00000395840 CCDC88BA6NC98 1476 aa14.95□□□□□ -0.02
RAE1-202ENST00000395840 MYT1Q01538 1121 aa14.93□□□□□ -0.02
RAE1-202ENST00000395840 PPARGC1BQ86YN6 1023 aaKnown RBP14.91□□□□□ -0.02
RAE1-202ENST00000395840 PDS5BQ9NTI5 1447 aa14.9□□□□□ -0.02
RAE1-202ENST00000395840 CFTRP13569 1480 aa14.9□□□□□ -0.02
RAE1-202ENST00000395840 NESP48681 1621 aa14.86□□□□□ -0.03
RAE1-202ENST00000395840 ERCC6Q03468 1493 aa14.86□□□□□ -0.03
RAE1-202ENST00000395840 PRDM2Q13029 1718 aa14.82□□□□□ -0.04
RAE1-202ENST00000395840 FANCD2Q9BXW9 1451 aa14.77□□□□□ -0.05
RAE1-202ENST00000395840 CEP164Q9UPV0 1460 aa14.75□□□□□ -0.05
RAE1-202ENST00000395840 KIF21AQ7Z4S6 1674 aa14.74□□□□□ -0.05
RAE1-202ENST00000395840 MRC2Q9UBG0 1479 aa14.7□□□□□ -0.06
RAE1-202ENST00000395840 CUX2O14529 1486 aa14.69□□□□□ -0.06
RAE1-202ENST00000395840 SCAF1Q9H7N4 1312 aaKnown RBP14.69□□□□□ -0.06
RAE1-202ENST00000395840 PCGF6Q9BYE7 350 aa14.68□□□□□ -0.06
RAE1-202ENST00000395840 THOC2Q8NI27 1593 aaKnown RBP14.67□□□□□ -0.06
RAE1-202ENST00000395840 ABCC8Q09428 1581 aa14.67□□□□□ -0.06
RAE1-202ENST00000395840 WDR62O43379 1518 aa14.64□□□□□ -0.07
RAE1-202ENST00000395840 DNMBPQ6XZF7 1577 aa14.57□□□□□ -0.08
RAE1-202ENST00000395840 URB2Q14146 1524 aaKnown RBP14.57□□□□□ -0.08
RAE1-202ENST00000395840 TOPBP1Q92547 1522 aa14.54□□□□□ -0.08
RAE1-202ENST00000395840 WRNQ14191 1432 aaPredicted RBP eCLIP14.47□□□□□ -0.09
RAE1-202ENST00000395840 IFT140Q96RY7 1462 aa14.46□□□□□ -0.09
RAE1-202ENST00000395840 CUX1P39880 1505 aa14.46□□□□□ -0.1
RAE1-202ENST00000395840 TOP2BQ02880 1626 aa14.43□□□□□ -0.1
RAE1-202ENST00000395840 BIVM-ERCC5R4GMW8 1640 aa14.43□□□□□ -0.1
RAE1-202ENST00000395840 POLA1P09884 1462 aaPredicted RBP14.41□□□□□ -0.1
RAE1-202ENST00000395840 FGD5Q6ZNL6 1462 aa14.4□□□□□ -0.1
RAE1-202ENST00000395840 WDR97A6NE52 1622 aa14.39□□□□□ -0.11
RAE1-202ENST00000395840 SOGA1O94964 1423 aa14.39□□□□□ -0.11
RAE1-202ENST00000395840 TARBP1Q13395 1621 aaKnown RBP14.36□□□□□ -0.11
RAE1-202ENST00000395840 SYNJ1O43426 1573 aa14.36□□□□□ -0.11
RAE1-202ENST00000395840 ABCA10Q8WWZ4 1543 aa14.31□□□□□ -0.12
RAE1-202ENST00000395840 RAD54L2Q9Y4B4 1467 aa14.3□□□□□ -0.12
RAE1-202ENST00000395840 EIF4G3O43432 1585 aaKnown RBP14.27□□□□□ -0.13
RAE1-202ENST00000395840 ZNF608Q9ULD9 1512 aaPredicted RBP14.26□□□□□ -0.13
RAE1-202ENST00000395840 TRIM41Q8WV44 630 aa14.24□□□□□ -0.13
RAE1-202ENST00000395840 GAPVD1Q14C86 1478 aa14.23□□□□□ -0.13
RAE1-202ENST00000395840 TDRD9Q8NDG6 1382 aaKnown RBP14.23□□□□□ -0.13
RAE1-202ENST00000395840 AQRO60306 1485 aaKnown RBP eCLIP14.22□□□□□ -0.138e-8■■■■■ 32.1
RAE1-202ENST00000395840 GRIN2BQ13224 1484 aa14.22□□□□□ -0.13
RAE1-202ENST00000395840 ABCA5Q8WWZ7 1642 aa14.22□□□□□ -0.13
RAE1-202ENST00000395840 KIF27Q86VH2 1401 aa14.19□□□□□ -0.14
RAE1-202ENST00000395840 MAGI1Q96QZ7 1491 aaPredicted RBP14.19□□□□□ -0.14
RAE1-202ENST00000395840 ERICH3Q5RHP9 1530 aa14.17□□□□□ -0.14
RAE1-202ENST00000395840 PBRM1Q86U86 1689 aa14.17□□□□□ -0.14
RAE1-202ENST00000395840 ACIN1Q9UKV3 1341 aaKnown RBP14.16□□□□□ -0.14
RAE1-202ENST00000395840 TTBK1Q5TCY1 1321 aaPredicted RBP14.14□□□□□ -0.15
RAE1-202ENST00000395840 SNAPC4Q5SXM2 1469 aa14.13□□□□□ -0.15
RAE1-202ENST00000395840 SYNJ2O15056 1496 aa14.11□□□□□ -0.15
RAE1-202ENST00000395840 CHIC1Q5VXU3 224 aa14.11□□□□□ -0.15
RAE1-202ENST00000395840 NEUROD1Q13562 356 aa14.11□□□□□ -0.15
RAE1-202ENST00000395840 FHAD1B1AJZ9 1412 aa14.09□□□□□ -0.15
RAE1-202ENST00000395840 ZEB1P37275 1124 aaPredicted RBP14.09□□□□□ -0.15
RAE1-202ENST00000395840 OSCARQ8IYS5 282 aa14.09□□□□□ -0.15
RAE1-202ENST00000395840 CHMP7Q8WUX9 453 aaPredicted RBP14.09□□□□□ -0.15
RAE1-202ENST00000395840 GTF3C3Q9Y5Q9 886 aa14.09□□□□□ -0.15
RAE1-202ENST00000395840 EEA1Q15075 1411 aa14.08□□□□□ -0.15
RAE1-202ENST00000395840 CUL7Q14999 1698 aa14.08□□□□□ -0.16
RAE1-202ENST00000395840 ADAMTS12P58397 1594 aa14.07□□□□□ -0.16
RAE1-202ENST00000395840 IGF1RP08069 1367 aa14.06□□□□□ -0.16
RAE1-202ENST00000395840 TRIM26Q12899 539 aaPredicted RBP14.05□□□□□ -0.16
RAE1-202ENST00000395840 CHD1O14646 1710 aa14.04□□□□□ -0.16
RAE1-202ENST00000395840 FBLN2P98095 1184 aa14.04□□□□□ -0.16
RAE1-202ENST00000395840 GRIN2AQ12879 1464 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms