RNA–Protein interactions for RNA: ENST00000377080.7

USP11-203, Transcript of ubiquitin specific peptidase 11, humanhuman

TSL 2

Gene USP11, Length 804 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-203ENST00000377080 NISCHQ9Y2I1 1504 aa20.99■□□□□ 0.95
USP11-203ENST00000377080 ABCC9O60706 1549 aa19.46■□□□□ 0.71
USP11-203ENST00000377080 CCDC180Q9P1Z9 1646 aa18.9■□□□□ 0.62
USP11-203ENST00000377080 DNAJC5BQ9UF47 199 aa18.75■□□□□ 0.59
USP11-203ENST00000377080 RB1CC1Q8TDY2 1594 aa18.25■□□□□ 0.51
USP11-203ENST00000377080 PABPN1Q86U42 306 aaKnown RBP eCLIP17.99■□□□□ 0.47
USP11-203ENST00000377080 NACADO15069 1562 aa17.96■□□□□ 0.47
USP11-203ENST00000377080 UNC13AQ9UPW8 1703 aa17.9■□□□□ 0.46
USP11-203ENST00000377080 DCAF8L2P0C7V8 631 aa17.74■□□□□ 0.43
USP11-203ENST00000377080 BICRAQ9NZM4 1560 aa17.73■□□□□ 0.43
USP11-203ENST00000377080 ZCCHC6Q5VYS8 1495 aaKnown RBP17.72■□□□□ 0.43
USP11-203ENST00000377080 DNAJC5Q9H3Z4 198 aa17.68■□□□□ 0.42
USP11-203ENST00000377080 CECR2Q9BXF3 1484 aa17.58■□□□□ 0.41
USP11-203ENST00000377080 CC2D2AQ9P2K1 1620 aa17.56■□□□□ 0.4
USP11-203ENST00000377080 MYO15BQ96JP2 1530 aa17.54■□□□□ 0.4
USP11-203ENST00000377080 DCAF1Q9Y4B6 1507 aa17.43■□□□□ 0.38
USP11-203ENST00000377080 SHROOM4Q9ULL8 1493 aa17.41■□□□□ 0.38
USP11-203ENST00000377080 EIF4G1Q04637 1599 aaKnown RBP17.36■□□□□ 0.37
USP11-203ENST00000377080 SCRIBQ14160 1630 aa17.23■□□□□ 0.35
USP11-203ENST00000377080 SUPT5HO00267 1087 aaKnown RBP17.09■□□□□ 0.33
USP11-203ENST00000377080 CUX2O14529 1486 aa17.01■□□□□ 0.31
USP11-203ENST00000377080 CHIC1Q5VXU3 224 aa16.86■□□□□ 0.29
USP11-203ENST00000377080 ERCC6Q03468 1493 aa16.86■□□□□ 0.29
USP11-203ENST00000377080 TRIM41Q8WV44 630 aa16.69■□□□□ 0.26
USP11-203ENST00000377080 NCAPD3P42695 1498 aa16.56■□□□□ 0.24
USP11-203ENST00000377080 NESP48681 1621 aa16.53■□□□□ 0.24
USP11-203ENST00000377080 THOC2Q8NI27 1593 aaKnown RBP16.51■□□□□ 0.23
USP11-203ENST00000377080 RSF1Q96T23 1441 aaPredicted RBP16.49■□□□□ 0.23
USP11-203ENST00000377080 ATAD2BQ9ULI0 1458 aa16.43■□□□□ 0.22
USP11-203ENST00000377080 SMARCA4P51532 1647 aa16.41■□□□□ 0.22
USP11-203ENST00000377080 HMGXB3Q12766 1538 aa16.4■□□□□ 0.22
USP11-203ENST00000377080 HRCP23327 699 aa16.4■□□□□ 0.22
USP11-203ENST00000377080 SMARCA2P51531 1590 aa16.38■□□□□ 0.21
USP11-203ENST00000377080 KIF21AQ7Z4S6 1674 aa16.36■□□□□ 0.21
USP11-203ENST00000377080 LAMC3Q9Y6N6 1575 aa16.33■□□□□ 0.2
USP11-203ENST00000377080 BAZ1AQ9NRL2 1556 aaPredicted RBP16.3■□□□□ 0.2
USP11-203ENST00000377080 BAZ1BQ9UIG0 1483 aaKnown RBP16.27■□□□□ 0.19
USP11-203ENST00000377080 PEG3Q9GZU2 1588 aa16.23■□□□□ 0.19
USP11-203ENST00000377080 PDS5BQ9NTI5 1447 aa16.23■□□□□ 0.19
USP11-203ENST00000377080 MROH2BQ7Z745 1585 aa16.18■□□□□ 0.18
USP11-203ENST00000377080 PCGF6Q9BYE7 350 aa16.17■□□□□ 0.18
USP11-203ENST00000377080 LOC105371045A0A1W2PR82 267 aa16.14■□□□□ 0.17
USP11-203ENST00000377080 TRIM26Q12899 539 aaPredicted RBP16.14■□□□□ 0.17
USP11-203ENST00000377080 MRC2Q9UBG0 1479 aa16.14■□□□□ 0.17
USP11-203ENST00000377080 WDR62O43379 1518 aa16.14■□□□□ 0.17
USP11-203ENST00000377080 OSCARQ8IYS5 282 aa16.11■□□□□ 0.17
USP11-203ENST00000377080 WIZO95785 1651 aa16.03■□□□□ 0.16
USP11-203ENST00000377080 RIMBP3CA6NJZ7 1639 aa16.03■□□□□ 0.16
USP11-203ENST00000377080 RIMBP3BA6NNM3 1639 aa16.03■□□□□ 0.16
USP11-203ENST00000377080 RIMBP3Q9UFD9 1639 aa16.03■□□□□ 0.16
USP11-203ENST00000377080 CADPSQ9ULU8 1353 aa16.02■□□□□ 0.16
USP11-203ENST00000377080 ZEB1P37275 1124 aaPredicted RBP15.98■□□□□ 0.15
USP11-203ENST00000377080 CEP164Q9UPV0 1460 aa15.96■□□□□ 0.14
USP11-203ENST00000377080 TOP2AP11388 1531 aaKnown RBP15.94■□□□□ 0.14
USP11-203ENST00000377080 ARHGEF11O15085 1522 aa15.89■□□□□ 0.13
USP11-203ENST00000377080 FANCD2Q9BXW9 1451 aa15.87■□□□□ 0.13
USP11-203ENST00000377080 AEBP2Q6ZN18 517 aaPredicted RBP15.85■□□□□ 0.13
USP11-203ENST00000377080 TRHP20396 242 aaPredicted RBP15.84■□□□□ 0.13
USP11-203ENST00000377080 CYB5RLQ6IPT4 315 aa15.8■□□□□ 0.12
USP11-203ENST00000377080 URB2Q14146 1524 aaKnown RBP15.78■□□□□ 0.12
USP11-203ENST00000377080 CCDC88BA6NC98 1476 aa15.77■□□□□ 0.11
USP11-203ENST00000377080 EEA1Q15075 1411 aa15.77■□□□□ 0.11
USP11-203ENST00000377080 CFTRP13569 1480 aa15.76■□□□□ 0.11
USP11-203ENST00000377080 PRDM2Q13029 1718 aa15.71■□□□□ 0.1
USP11-203ENST00000377080 PPARGC1BQ86YN6 1023 aaKnown RBP15.7■□□□□ 0.1
USP11-203ENST00000377080 WRNQ14191 1432 aaPredicted RBP eCLIP15.69■□□□□ 0.1
USP11-203ENST00000377080 ZNF608Q9ULD9 1512 aaPredicted RBP15.69■□□□□ 0.1
USP11-203ENST00000377080 FAM9AQ8IZU1 332 aaPredicted RBP15.69■□□□□ 0.1
USP11-203ENST00000377080 ARAP1Q96P48 1450 aa15.68■□□□□ 0.1
USP11-203ENST00000377080 IFT140Q96RY7 1462 aa15.65■□□□□ 0.1
USP11-203ENST00000377080 CHD1O14646 1710 aa15.65■□□□□ 0.1
USP11-203ENST00000377080 EIF4G3O43432 1585 aaKnown RBP15.62■□□□□ 0.09
USP11-203ENST00000377080 TNIKQ9UKE5 1360 aa15.62■□□□□ 0.09
USP11-203ENST00000377080 ABCC8Q09428 1581 aa15.58■□□□□ 0.08
USP11-203ENST00000377080 CSRNP3Q8WYN3 585 aa15.52■□□□□ 0.08
USP11-203ENST00000377080 TOPBP1Q92547 1522 aa15.5■□□□□ 0.07
USP11-203ENST00000377080 FBLN2P98095 1184 aa15.5■□□□□ 0.07
USP11-203ENST00000377080 CEP162Q5TB80 1403 aa15.48■□□□□ 0.07
USP11-203ENST00000377080 GOLGA3Q08378 1498 aa15.47■□□□□ 0.07
USP11-203ENST00000377080 KIF21BO75037 1637 aa15.46■□□□□ 0.07
USP11-203ENST00000377080 AQRO60306 1485 aaKnown RBP eCLIP15.46■□□□□ 0.07
USP11-203ENST00000377080 SOGA1O94964 1423 aa15.46■□□□□ 0.07
USP11-203ENST00000377080 DNMBPQ6XZF7 1577 aa15.45■□□□□ 0.06
USP11-203ENST00000377080 TARBP1Q13395 1621 aaKnown RBP15.43■□□□□ 0.06
USP11-203ENST00000377080 CLASP1Q7Z460 1538 aa15.39■□□□□ 0.05
USP11-203ENST00000377080 RUSC2Q8N2Y8 1516 aa15.35■□□□□ 0.05
USP11-203ENST00000377080 SYNJ1O43426 1573 aa15.35■□□□□ 0.05
USP11-203ENST00000377080 POLA1P09884 1462 aaPredicted RBP15.33■□□□□ 0.04
USP11-203ENST00000377080 TOP2BQ02880 1626 aa15.32■□□□□ 0.04
USP11-203ENST00000377080 BIVM-ERCC5R4GMW8 1640 aa15.31■□□□□ 0.04
USP11-203ENST00000377080 SNAPC4Q5SXM2 1469 aa15.3■□□□□ 0.04
USP11-203ENST00000377080 EHMT2Q96KQ7 1210 aa15.3■□□□□ 0.04
USP11-203ENST00000377080 UBTFP17480 764 aaKnown RBP15.29■□□□□ 0.04
USP11-203ENST00000377080 CCER1Q8TC90 406 aaPredicted RBP15.29■□□□□ 0.04
USP11-203ENST00000377080 GAPVD1Q14C86 1478 aa15.27■□□□□ 0.04
USP11-203ENST00000377080 RAD54L2Q9Y4B4 1467 aa15.27■□□□□ 0.04
USP11-203ENST00000377080 CHMP7Q8WUX9 453 aaPredicted RBP15.27■□□□□ 0.04
USP11-203ENST00000377080 TDRD9Q8NDG6 1382 aaKnown RBP15.26■□□□□ 0.03
USP11-203ENST00000377080 ERICH3Q5RHP9 1530 aa15.25■□□□□ 0.03
USP11-203ENST00000377080 FGD5Q6ZNL6 1462 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms