RNA–Protein interactions for RNA: ENST00000361528.8

CNOT4-203, Transcript of CCR4-NOT transcription complex subunit 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CNOT4, Length 2,215 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4-203ENST00000361528 PELP1Q8IZL8 1130 aaKnown RBP20.48■□□□□ 0.87
CNOT4-203ENST00000361528 MYT1Q01538 1121 aa20.04■□□□□ 0.8
CNOT4-203ENST00000361528 HRCP23327 699 aa19.76■□□□□ 0.75
CNOT4-203ENST00000361528 NISCHQ9Y2I1 1504 aa19.72■□□□□ 0.75
CNOT4-203ENST00000361528 TTBK1Q5TCY1 1321 aaPredicted RBP19.12■□□□□ 0.65
CNOT4-203ENST00000361528 SCAF1Q9H7N4 1312 aaKnown RBP18.96■□□□□ 0.63
CNOT4-203ENST00000361528 PPARGC1BQ86YN6 1023 aaKnown RBP18.95■□□□□ 0.62
CNOT4-203ENST00000361528 PCGF6Q9BYE7 350 aa18.76■□□□□ 0.59
CNOT4-203ENST00000361528 ZEB1P37275 1124 aaPredicted RBP18.51■□□□□ 0.55
CNOT4-203ENST00000361528 MYO15BQ96JP2 1530 aa18.45■□□□□ 0.54
CNOT4-203ENST00000361528 DCAF1Q9Y4B6 1507 aa18.45■□□□□ 0.54
CNOT4-203ENST00000361528 ACIN1Q9UKV3 1341 aaKnown RBP18.4■□□□□ 0.54
CNOT4-203ENST00000361528 CCDC180Q9P1Z9 1646 aa18.36■□□□□ 0.53
CNOT4-203ENST00000361528 CENPBP07199 599 aaPredicted RBP18.22■□□□□ 0.51
CNOT4-203ENST00000361528 TRIM26Q12899 539 aaPredicted RBP18.22■□□□□ 0.51
CNOT4-203ENST00000361528 BCL11AQ9H165 835 aa18.18■□□□□ 0.5
CNOT4-203ENST00000361528 NEUROD1Q13562 356 aa18.16■□□□□ 0.5
CNOT4-203ENST00000361528 GTF3C3Q9Y5Q9 886 aa18.15■□□□□ 0.5
CNOT4-203ENST00000361528 CHIC1Q5VXU3 224 aa18.06■□□□□ 0.48
CNOT4-203ENST00000361528 PRKCSHP14314 528 aaPredicted RBP18.03■□□□□ 0.48
CNOT4-203ENST00000361528 ERICH6Q7L0X2 663 aa17.96■□□□□ 0.47
CNOT4-203ENST00000361528 FAM9AQ8IZU1 332 aaPredicted RBP17.94■□□□□ 0.46
CNOT4-203ENST00000361528 SUPT5HO00267 1087 aaKnown RBP17.87■□□□□ 0.45
CNOT4-203ENST00000361528 ANP32EQ9BTT0 268 aa17.8■□□□□ 0.44
CNOT4-203ENST00000361528 APLP2Q06481 763 aa17.72■□□□□ 0.43
CNOT4-203ENST00000361528 DIEXFQ68CQ4 756 aaKnown RBP17.63■□□□□ 0.41
CNOT4-203ENST00000361528 SHROOM4Q9ULL8 1493 aa17.59■□□□□ 0.41
CNOT4-203ENST00000361528 CLSPNQ9HAW4 1339 aa17.56■□□□□ 0.4
CNOT4-203ENST00000361528 LOC105371045A0A1W2PR82 267 aa17.5■□□□□ 0.39
CNOT4-203ENST00000361528 CSRNP3Q8WYN3 585 aa17.46■□□□□ 0.39
CNOT4-203ENST00000361528 TRIM41Q8WV44 630 aa17.37■□□□□ 0.37
CNOT4-203ENST00000361528 TSHZ2Q9NRE2 1034 aa17.3■□□□□ 0.36
CNOT4-203ENST00000361528 CCER1Q8TC90 406 aaPredicted RBP17.21■□□□□ 0.35
CNOT4-203ENST00000361528 ZNF316A6NFI3 1004 aaPredicted RBP17.19■□□□□ 0.34
CNOT4-203ENST00000361528 SUPT16HQ9Y5B9 1047 aaKnown RBP17.18■□□□□ 0.34
CNOT4-203ENST00000361528 YTHDC1Q96MU7 727 aaKnown RBP17.17■□□□□ 0.34
CNOT4-203ENST00000361528 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.09■□□□□ 0.33
CNOT4-203ENST00000361528 MYT1LQ9UL68 1186 aa17.09■□□□□ 0.33
CNOT4-203ENST00000361528 MIER1Q8N108 512 aa17.02■□□□□ 0.32
CNOT4-203ENST00000361528 ZCCHC6Q5VYS8 1495 aaKnown RBP16.96■□□□□ 0.3
CNOT4-203ENST00000361528 ERICH6BQ5W0A0 696 aa16.9■□□□□ 0.3
CNOT4-203ENST00000361528 UBE2Q2Q8WVN8 375 aa16.89■□□□□ 0.29
CNOT4-203ENST00000361528 ANO8Q9HCE9 1232 aaPredicted RBP16.84■□□□□ 0.29
CNOT4-203ENST00000361528 RBM19Q9Y4C8 960 aaKnown RBP16.83■□□□□ 0.28
CNOT4-203ENST00000361528 FANCIQ9NVI1 1328 aa16.74■□□□□ 0.27
CNOT4-203ENST00000361528 MSH5O43196 834 aa16.68■□□□□ 0.26
CNOT4-203ENST00000361528 DEKP35659 375 aaKnown RBP16.68■□□□□ 0.26
CNOT4-203ENST00000361528 SLC24A1O60721 1099 aa16.66■□□□□ 0.26
CNOT4-203ENST00000361528 EIF5BO60841 1220 aaKnown RBP16.6■□□□□ 0.25
CNOT4-203ENST00000361528 SALL2Q9Y467 1007 aaPredicted RBP16.6■□□□□ 0.25
CNOT4-203ENST00000361528 WRNQ14191 1432 aaPredicted RBP eCLIP16.57■□□□□ 0.24
CNOT4-203ENST00000361528 FKBP8Q14318 412 aa16.49■□□□□ 0.23
CNOT4-203ENST00000361528 NEFLP07196 543 aa16.47■□□□□ 0.23
CNOT4-203ENST00000361528 DAXXQ9UER7 740 aaPredicted RBP16.47■□□□□ 0.23
CNOT4-203ENST00000361528 BCANQ96GW7 911 aa16.45■□□□□ 0.22
CNOT4-203ENST00000361528 CCDC136Q96JN2 1154 aa16.39■□□□□ 0.22
CNOT4-203ENST00000361528 PKNOX2Q96KN3 472 aa16.38■□□□□ 0.21
CNOT4-203ENST00000361528 CDK11AQ9UQ88 783 aaPredicted RBP16.34■□□□□ 0.21
CNOT4-203ENST00000361528 ABCC9O60706 1549 aa16.26■□□□□ 0.19
CNOT4-203ENST00000361528 NOP58Q9Y2X3 529 aaKnown RBP16.23■□□□□ 0.19
CNOT4-203ENST00000361528 ITGAEP38570 1179 aa16.22■□□□□ 0.19
CNOT4-203ENST00000361528 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.22■□□□□ 0.19
CNOT4-203ENST00000361528 DCAF8L2P0C7V8 631 aa16.21■□□□□ 0.19
CNOT4-203ENST00000361528 IL27Q8NEV9 243 aa16.21■□□□□ 0.19
CNOT4-203ENST00000361528 RTL5Q5HYW3 569 aaPredicted RBP16.2■□□□□ 0.18
CNOT4-203ENST00000361528 EHMT2Q96KQ7 1210 aa16.18■□□□□ 0.18
CNOT4-203ENST00000361528 RB1CC1Q8TDY2 1594 aa16.18■□□□□ 0.18
CNOT4-203ENST00000361528 C11orf95C9JLR9 678 aaPredicted RBP16.17■□□□□ 0.18
CNOT4-203ENST00000361528 CEP162Q5TB80 1403 aa16.14■□□□□ 0.17
CNOT4-203ENST00000361528 NBR1Q14596 966 aa16.13■□□□□ 0.17
CNOT4-203ENST00000361528 GLIPR1L2Q4G1C9 344 aa16.13■□□□□ 0.17
CNOT4-203ENST00000361528 PODXL2Q9NZ53 605 aa16.1■□□□□ 0.17
CNOT4-203ENST00000361528 RSF1Q96T23 1441 aaPredicted RBP16.08■□□□□ 0.17
CNOT4-203ENST00000361528 WASHC2AQ641Q2 1341 aa16.07■□□□□ 0.16
CNOT4-203ENST00000361528 RTN4Q9NQC3 1192 aaKnown RBP16.07■□□□□ 0.16
CNOT4-203ENST00000361528 TNIKQ9UKE5 1360 aa16.06■□□□□ 0.16
CNOT4-203ENST00000361528 KCNH8Q96L42 1107 aa16.06■□□□□ 0.16
CNOT4-203ENST00000361528 CCER2I3L3R5 266 aa16.06■□□□□ 0.16
CNOT4-203ENST00000361528 RSPH6AQ9H0K4 717 aa16.06■□□□□ 0.16
CNOT4-203ENST00000361528 USP35Q9P2H5 1018 aa16.04■□□□□ 0.16
CNOT4-203ENST00000361528 WASHC2CQ9Y4E1 1318 aa16.03■□□□□ 0.16
CNOT4-203ENST00000361528 HNRNPUL2Q1KMD3 747 aaKnown RBP16■□□□□ 0.15
CNOT4-203ENST00000361528 DHX57Q6P158 1386 aaKnown RBP15.99■□□□□ 0.15
CNOT4-203ENST00000361528 PAK3O75914 559 aaPredicted RBP15.99■□□□□ 0.15
CNOT4-203ENST00000361528 PLEKHG5O94827 1062 aa15.99■□□□□ 0.15
CNOT4-203ENST00000361528 PPP4R2Q9NY27 417 aa15.99■□□□□ 0.15
CNOT4-203ENST00000361528 IPO9Q96P70 1041 aaKnown RBP15.97■□□□□ 0.15
CNOT4-203ENST00000361528 ANP32AP39687 249 aaKnown RBP15.94■□□□□ 0.14
CNOT4-203ENST00000361528 EEA1Q15075 1411 aa15.92■□□□□ 0.14
CNOT4-203ENST00000361528 ZBTB47Q9UFB7 747 aaPredicted RBP15.92■□□□□ 0.14
CNOT4-203ENST00000361528 ZMYND15Q9H091 742 aa15.88■□□□□ 0.13
CNOT4-203ENST00000361528 NACADO15069 1562 aa15.88■□□□□ 0.13
CNOT4-203ENST00000361528 TRIM52Q96A61 297 aa15.87■□□□□ 0.13
CNOT4-203ENST00000361528 FAM43AQ8N2R8 423 aa15.82■□□□□ 0.12
CNOT4-203ENST00000361528 PPP1R15AO75807 674 aaPredicted RBP15.82■□□□□ 0.12
CNOT4-203ENST00000361528 ANP32CO43423 234 aa15.81■□□□□ 0.12
CNOT4-203ENST00000361528 PPM1GO15355 546 aaPredicted RBP15.8■□□□□ 0.12
CNOT4-203ENST00000361528 VSIG10Q8N0Z9 540 aa15.79■□□□□ 0.12
CNOT4-203ENST00000361528 NEFMP07197 916 aa15.78■□□□□ 0.12
CNOT4-203ENST00000361528 BRPF3Q9ULD4 1205 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms