RNA–Protein interactions for RNA: ENST00000359333.7

TMEM139-201, Transcript of transmembrane protein 139, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TMEM139, Length 2,383 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM139-201ENST00000359333 NISCHQ9Y2I1 1504 aa28.73■■■□□ 2.19
TMEM139-201ENST00000359333 HRCP23327 699 aa25.95■■□□□ 1.74
TMEM139-201ENST00000359333 PELP1Q8IZL8 1130 aaKnown RBP25.34■■□□□ 1.65
TMEM139-201ENST00000359333 SUPT5HO00267 1087 aaKnown RBP25.32■■□□□ 1.64
TMEM139-201ENST00000359333 SHROOM4Q9ULL8 1493 aa25.31■■□□□ 1.64
TMEM139-201ENST00000359333 PCGF6Q9BYE7 350 aa25.3■■□□□ 1.64
TMEM139-201ENST00000359333 PPARGC1BQ86YN6 1023 aaKnown RBP25.23■■□□□ 1.63
TMEM139-201ENST00000359333 MYO15BQ96JP2 1530 aa25.12■■□□□ 1.61
TMEM139-201ENST00000359333 CHIC1Q5VXU3 224 aa25.03■■□□□ 1.6
TMEM139-201ENST00000359333 DCAF1Q9Y4B6 1507 aa24.82■■□□□ 1.56
TMEM139-201ENST00000359333 TRIM26Q12899 539 aaPredicted RBP24.59■■□□□ 1.53
TMEM139-201ENST00000359333 ZEB1P37275 1124 aaPredicted RBP24.53■■□□□ 1.52
TMEM139-201ENST00000359333 CCDC180Q9P1Z9 1646 aa24.52■■□□□ 1.52
TMEM139-201ENST00000359333 SCAF1Q9H7N4 1312 aaKnown RBP24.52■■□□□ 1.52
TMEM139-201ENST00000359333 ZCCHC6Q5VYS8 1495 aaKnown RBP24.46■■□□□ 1.51
TMEM139-201ENST00000359333 MYT1Q01538 1121 aa24.45■■□□□ 1.51
TMEM139-201ENST00000359333 LOC105371045A0A1W2PR82 267 aa24.36■■□□□ 1.49
TMEM139-201ENST00000359333 ABCC9O60706 1549 aa24.03■■□□□ 1.44
TMEM139-201ENST00000359333 ACIN1Q9UKV3 1341 aaKnown RBP23.99■■□□□ 1.43
TMEM139-201ENST00000359333 NEUROD1Q13562 356 aa23.83■■□□□ 1.4
TMEM139-201ENST00000359333 DCAF8L2P0C7V8 631 aa23.76■■□□□ 1.39
TMEM139-201ENST00000359333 CENPBP07199 599 aaPredicted RBP23.75■■□□□ 1.39
TMEM139-201ENST00000359333 GTF3C3Q9Y5Q9 886 aa23.73■■□□□ 1.39
TMEM139-201ENST00000359333 DIEXFQ68CQ4 756 aaKnown RBP23.52■■□□□ 1.36
TMEM139-201ENST00000359333 TRIM41Q8WV44 630 aa23.5■■□□□ 1.35
TMEM139-201ENST00000359333 CCER1Q8TC90 406 aaPredicted RBP23.44■■□□□ 1.34
TMEM139-201ENST00000359333 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.4■■□□□ 1.34
TMEM139-201ENST00000359333 FAM9AQ8IZU1 332 aaPredicted RBP23.37■■□□□ 1.33
TMEM139-201ENST00000359333 EHMT2Q96KQ7 1210 aa23.17■■□□□ 1.3
TMEM139-201ENST00000359333 RSF1Q96T23 1441 aaPredicted RBP23.13■■□□□ 1.29
TMEM139-201ENST00000359333 ZNF316A6NFI3 1004 aaPredicted RBP23.08■■□□□ 1.29
TMEM139-201ENST00000359333 YTHDC1Q96MU7 727 aaKnown RBP23.04■■□□□ 1.28
TMEM139-201ENST00000359333 RB1CC1Q8TDY2 1594 aa23.03■■□□□ 1.28
TMEM139-201ENST00000359333 TTBK1Q5TCY1 1321 aaPredicted RBP22.96■■□□□ 1.27
TMEM139-201ENST00000359333 MIER1Q8N108 512 aa22.85■■□□□ 1.25
TMEM139-201ENST00000359333 WRNQ14191 1432 aaPredicted RBP eCLIP22.8■■□□□ 1.24
TMEM139-201ENST00000359333 CLSPNQ9HAW4 1339 aa22.77■■□□□ 1.24
TMEM139-201ENST00000359333 NACADO15069 1562 aa22.73■■□□□ 1.23
TMEM139-201ENST00000359333 ANP32EQ9BTT0 268 aa22.67■■□□□ 1.22
TMEM139-201ENST00000359333 SCRIBQ14160 1630 aa22.66■■□□□ 1.22
TMEM139-201ENST00000359333 BCL11AQ9H165 835 aa22.61■■□□□ 1.21
TMEM139-201ENST00000359333 SUPT16HQ9Y5B9 1047 aaKnown RBP22.6■■□□□ 1.21
TMEM139-201ENST00000359333 CEP162Q5TB80 1403 aa22.57■■□□□ 1.2
TMEM139-201ENST00000359333 TSHZ2Q9NRE2 1034 aa22.52■■□□□ 1.19
TMEM139-201ENST00000359333 DNAJC5BQ9UF47 199 aa22.52■■□□□ 1.19
TMEM139-201ENST00000359333 TNIKQ9UKE5 1360 aa22.47■■□□□ 1.19
TMEM139-201ENST00000359333 PABPN1Q86U42 306 aaKnown RBP eCLIP22.43■■□□□ 1.18
TMEM139-201ENST00000359333 MROH2BQ7Z745 1585 aa22.39■■□□□ 1.17
TMEM139-201ENST00000359333 EIF4G1Q04637 1599 aaKnown RBP22.37■■□□□ 1.17
TMEM139-201ENST00000359333 CECR2Q9BXF3 1484 aa22.37■■□□□ 1.17
TMEM139-201ENST00000359333 UNC13AQ9UPW8 1703 aa22.37■■□□□ 1.17
TMEM139-201ENST00000359333 HNRNPUL2Q1KMD3 747 aaKnown RBP22.35■■□□□ 1.17
TMEM139-201ENST00000359333 WIZO95785 1651 aa22.33■■□□□ 1.16
TMEM139-201ENST00000359333 CSRNP3Q8WYN3 585 aa22.33■■□□□ 1.16
TMEM139-201ENST00000359333 UBTFP17480 764 aaKnown RBP22.27■■□□□ 1.16
TMEM139-201ENST00000359333 CCDC88BA6NC98 1476 aa22.27■■□□□ 1.16
TMEM139-201ENST00000359333 EEA1Q15075 1411 aa22.25■■□□□ 1.15
TMEM139-201ENST00000359333 BAZ1AQ9NRL2 1556 aaPredicted RBP22.25■■□□□ 1.15
TMEM139-201ENST00000359333 BICRAQ9NZM4 1560 aa22.24■■□□□ 1.15
TMEM139-201ENST00000359333 ABCC8Q09428 1581 aa22.21■■□□□ 1.15
TMEM139-201ENST00000359333 SOGA1O94964 1423 aa22.2■■□□□ 1.14
TMEM139-201ENST00000359333 GOLGA3Q08378 1498 aa22.16■■□□□ 1.14
TMEM139-201ENST00000359333 APLP2Q06481 763 aa22.04■■□□□ 1.12
TMEM139-201ENST00000359333 RUSC2Q8N2Y8 1516 aa22.02■■□□□ 1.12
TMEM139-201ENST00000359333 BCANQ96GW7 911 aa22.01■■□□□ 1.11
TMEM139-201ENST00000359333 RBM19Q9Y4C8 960 aaKnown RBP22■■□□□ 1.11
TMEM139-201ENST00000359333 DHX57Q6P158 1386 aaKnown RBP21.99■■□□□ 1.11
TMEM139-201ENST00000359333 FKBP8Q14318 412 aa21.98■■□□□ 1.11
TMEM139-201ENST00000359333 VPS8Q8N3P4 1428 aa21.97■■□□□ 1.11
TMEM139-201ENST00000359333 TOP2AP11388 1531 aaKnown RBP21.97■■□□□ 1.11
TMEM139-201ENST00000359333 CLIP1P30622 1438 aa21.96■■□□□ 1.11
TMEM139-201ENST00000359333 CEP164Q9UPV0 1460 aa21.92■■□□□ 1.1
TMEM139-201ENST00000359333 NEFLP07196 543 aa21.89■■□□□ 1.1
TMEM139-201ENST00000359333 SMARCA2P51531 1590 aa21.88■■□□□ 1.09
TMEM139-201ENST00000359333 KIF21BO75037 1637 aa21.86■■□□□ 1.09
TMEM139-201ENST00000359333 KCNH8Q96L42 1107 aa21.85■■□□□ 1.09
TMEM139-201ENST00000359333 BAZ1BQ9UIG0 1483 aaKnown RBP21.77■■□□□ 1.08
TMEM139-201ENST00000359333 MSH5O43196 834 aa21.74■■□□□ 1.07
TMEM139-201ENST00000359333 FANCIQ9NVI1 1328 aa21.71■■□□□ 1.07
TMEM139-201ENST00000359333 ERICH6Q7L0X2 663 aa21.7■■□□□ 1.06
TMEM139-201ENST00000359333 MYT1LQ9UL68 1186 aa21.69■■□□□ 1.06
TMEM139-201ENST00000359333 CC2D2AQ9P2K1 1620 aa21.69■■□□□ 1.06
TMEM139-201ENST00000359333 ITGAEP38570 1179 aa21.68■■□□□ 1.06
TMEM139-201ENST00000359333 SMARCA4P51532 1647 aa21.67■■□□□ 1.06
TMEM139-201ENST00000359333 PRKCSHP14314 528 aaPredicted RBP21.65■■□□□ 1.06
TMEM139-201ENST00000359333 CUX2O14529 1486 aa21.63■■□□□ 1.05
TMEM139-201ENST00000359333 DDX10Q13206 875 aaKnown RBP21.61■■□□□ 1.05
TMEM139-201ENST00000359333 RAPGEF2Q9Y4G8 1499 aa21.6■■□□□ 1.05
TMEM139-201ENST00000359333 CCER2I3L3R5 266 aa21.59■■□□□ 1.05
TMEM139-201ENST00000359333 RANGAP1P46060 587 aaPredicted RBP21.59■■□□□ 1.05
TMEM139-201ENST00000359333 RRBP1Q9P2E9 1410 aaKnown RBP21.59■■□□□ 1.05
TMEM139-201ENST00000359333 CDK11AQ9UQ88 783 aaPredicted RBP21.57■■□□□ 1.04
TMEM139-201ENST00000359333 TRIM52Q96A61 297 aa21.55■■□□□ 1.04
TMEM139-201ENST00000359333 SYNJ1O43426 1573 aa21.54■■□□□ 1.04
TMEM139-201ENST00000359333 PPP1R15AO75807 674 aaPredicted RBP21.52■■□□□ 1.04
TMEM139-201ENST00000359333 KANK4Q5T7N3 995 aaPredicted RBP21.52■■□□□ 1.04
TMEM139-201ENST00000359333 ANP32CO43423 234 aa21.5■■□□□ 1.03
TMEM139-201ENST00000359333 CCNB3Q8WWL7 1395 aa21.48■■□□□ 1.03
TMEM139-201ENST00000359333 DEKP35659 375 aaKnown RBP21.46■■□□□ 1.03
TMEM139-201ENST00000359333 MAPKBP1O60336 1514 aa21.45■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms