RNA–Protein interactions for RNA: ENST00000317173.8

MSRA-201, Transcript of methionine sulfoxide reductase A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSRA, Length 1,536 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSRA-201ENST00000317173 NISCHQ9Y2I1 1504 aa32.78■■■□□ 2.84
MSRA-201ENST00000317173 CCDC180Q9P1Z9 1646 aa29.24■■■□□ 2.27
MSRA-201ENST00000317173 ABCC9O60706 1549 aa28.72■■■□□ 2.19
MSRA-201ENST00000317173 RB1CC1Q8TDY2 1594 aa27.61■■■□□ 2.01
MSRA-201ENST00000317173 NACADO15069 1562 aa27.54■■■□□ 2
MSRA-201ENST00000317173 ZCCHC6Q5VYS8 1495 aaKnown RBP27.4■■□□□ 1.98
MSRA-201ENST00000317173 DCAF8L2P0C7V8 631 aa27.39■■□□□ 1.98
MSRA-201ENST00000317173 MYO15BQ96JP2 1530 aa27.35■■□□□ 1.97
MSRA-201ENST00000317173 DCAF1Q9Y4B6 1507 aa27.16■■□□□ 1.94
MSRA-201ENST00000317173 UNC13AQ9UPW8 1703 aa26.9■■□□□ 1.9
MSRA-201ENST00000317173 PABPN1Q86U42 306 aaKnown RBP eCLIP26.78■■□□□ 1.88
MSRA-201ENST00000317173 BICRAQ9NZM4 1560 aa26.72■■□□□ 1.87
MSRA-201ENST00000317173 SCRIBQ14160 1630 aa26.62■■□□□ 1.85
MSRA-201ENST00000317173 SHROOM4Q9ULL8 1493 aa26.54■■□□□ 1.84
MSRA-201ENST00000317173 DNAJC5BQ9UF47 199 aa26.45■■□□□ 1.83
MSRA-201ENST00000317173 EIF4G1Q04637 1599 aaKnown RBP26.06■■□□□ 1.76
MSRA-201ENST00000317173 CC2D2AQ9P2K1 1620 aa25.98■■□□□ 1.75
MSRA-201ENST00000317173 CECR2Q9BXF3 1484 aa25.84■■□□□ 1.73
MSRA-201ENST00000317173 SMARCA4P51532 1647 aa25.46■■□□□ 1.67
MSRA-201ENST00000317173 BAZ1AQ9NRL2 1556 aaPredicted RBP25.44■■□□□ 1.66
MSRA-201ENST00000317173 NCAPD3P42695 1498 aa25.4■■□□□ 1.66
MSRA-201ENST00000317173 ATAD2BQ9ULI0 1458 aa25.37■■□□□ 1.65
MSRA-201ENST00000317173 SMARCA2P51531 1590 aa25.37■■□□□ 1.65
MSRA-201ENST00000317173 HMGXB3Q12766 1538 aa25.28■■□□□ 1.64
MSRA-201ENST00000317173 PEG3Q9GZU2 1588 aa25.25■■□□□ 1.63
MSRA-201ENST00000317173 MROH2BQ7Z745 1585 aa25.22■■□□□ 1.63
MSRA-201ENST00000317173 BAZ1BQ9UIG0 1483 aaKnown RBP25.17■■□□□ 1.62
MSRA-201ENST00000317173 RSF1Q96T23 1441 aaPredicted RBP25.16■■□□□ 1.62
MSRA-201ENST00000317173 SUPT5HO00267 1087 aaKnown RBP25.05■■□□□ 1.6
MSRA-201ENST00000317173 WIZO95785 1651 aa24.97■■□□□ 1.59
MSRA-201ENST00000317173 ERCC6Q03468 1493 aa24.8■■□□□ 1.56
MSRA-201ENST00000317173 NESP48681 1621 aa24.78■■□□□ 1.56
MSRA-201ENST00000317173 TOP2AP11388 1531 aaKnown RBP24.77■■□□□ 1.56
MSRA-201ENST00000317173 LAMC3Q9Y6N6 1575 aa24.76■■□□□ 1.55
MSRA-201ENST00000317173 CADPSQ9ULU8 1353 aa24.65■■□□□ 1.54
MSRA-201ENST00000317173 CUX2O14529 1486 aa24.63■■□□□ 1.53
MSRA-201ENST00000317173 PDS5BQ9NTI5 1447 aa24.61■■□□□ 1.53
MSRA-201ENST00000317173 KIF21AQ7Z4S6 1674 aa24.49■■□□□ 1.51
MSRA-201ENST00000317173 THOC2Q8NI27 1593 aaKnown RBP24.48■■□□□ 1.51
MSRA-201ENST00000317173 CFTRP13569 1480 aa24.46■■□□□ 1.51
MSRA-201ENST00000317173 CCDC88BA6NC98 1476 aa24.43■■□□□ 1.5
MSRA-201ENST00000317173 FANCD2Q9BXW9 1451 aa24.36■■□□□ 1.49
MSRA-201ENST00000317173 MRC2Q9UBG0 1479 aa24.36■■□□□ 1.49
MSRA-201ENST00000317173 CEP164Q9UPV0 1460 aa24.36■■□□□ 1.49
MSRA-201ENST00000317173 WDR62O43379 1518 aa24.28■■□□□ 1.48
MSRA-201ENST00000317173 PRDM2Q13029 1718 aa24.26■■□□□ 1.47
MSRA-201ENST00000317173 URB2Q14146 1524 aaKnown RBP24.1■■□□□ 1.45
MSRA-201ENST00000317173 DNAJC5Q9H3Z4 198 aa24.02■■□□□ 1.44
MSRA-201ENST00000317173 ABCC8Q09428 1581 aa23.99■■□□□ 1.43
MSRA-201ENST00000317173 TOPBP1Q92547 1522 aa23.94■■□□□ 1.42
MSRA-201ENST00000317173 DNMBPQ6XZF7 1577 aa23.92■■□□□ 1.42
MSRA-201ENST00000317173 CHIC1Q5VXU3 224 aa23.87■■□□□ 1.41
MSRA-201ENST00000317173 IFT140Q96RY7 1462 aa23.86■■□□□ 1.41
MSRA-201ENST00000317173 WRNQ14191 1432 aaPredicted RBP eCLIP23.73■■□□□ 1.39
MSRA-201ENST00000317173 POLA1P09884 1462 aaPredicted RBP23.73■■□□□ 1.39
MSRA-201ENST00000317173 ZNF608Q9ULD9 1512 aaPredicted RBP23.71■■□□□ 1.39
MSRA-201ENST00000317173 CUX1P39880 1505 aa23.69■■□□□ 1.38
MSRA-201ENST00000317173 TARBP1Q13395 1621 aaKnown RBP23.69■■□□□ 1.38
MSRA-201ENST00000317173 TRIM41Q8WV44 630 aa23.67■■□□□ 1.38
MSRA-201ENST00000317173 FGD5Q6ZNL6 1462 aa23.65■■□□□ 1.38
MSRA-201ENST00000317173 BIVM-ERCC5R4GMW8 1640 aa23.64■■□□□ 1.38
MSRA-201ENST00000317173 EIF4G3O43432 1585 aaKnown RBP23.64■■□□□ 1.38
MSRA-201ENST00000317173 SOGA1O94964 1423 aa23.63■■□□□ 1.37
MSRA-201ENST00000317173 TOP2BQ02880 1626 aa23.63■■□□□ 1.37
MSRA-201ENST00000317173 SYNJ1O43426 1573 aa23.63■■□□□ 1.37
MSRA-201ENST00000317173 RAD54L2Q9Y4B4 1467 aa23.6■■□□□ 1.37
MSRA-201ENST00000317173 WDR97A6NE52 1622 aa23.56■■□□□ 1.36
MSRA-201ENST00000317173 AQRO60306 1485 aaKnown RBP eCLIP23.56■■□□□ 1.36
MSRA-201ENST00000317173 OSCARQ8IYS5 282 aa23.54■■□□□ 1.36
MSRA-201ENST00000317173 TDRD9Q8NDG6 1382 aaKnown RBP23.49■■□□□ 1.35
MSRA-201ENST00000317173 ABCA10Q8WWZ4 1543 aa23.43■■□□□ 1.34
MSRA-201ENST00000317173 GRIN2BQ13224 1484 aa23.39■■□□□ 1.34
MSRA-201ENST00000317173 GAPVD1Q14C86 1478 aa23.36■■□□□ 1.33
MSRA-201ENST00000317173 SNAPC4Q5SXM2 1469 aa23.36■■□□□ 1.33
MSRA-201ENST00000317173 MAGI1Q96QZ7 1491 aaPredicted RBP23.36■■□□□ 1.33
MSRA-201ENST00000317173 CHD1O14646 1710 aa23.35■■□□□ 1.33
MSRA-201ENST00000317173 ABCA5Q8WWZ7 1642 aa23.33■■□□□ 1.33
MSRA-201ENST00000317173 FBLN2P98095 1184 aa23.31■■□□□ 1.32
MSRA-201ENST00000317173 EEA1Q15075 1411 aa23.31■■□□□ 1.32
MSRA-201ENST00000317173 PBRM1Q86U86 1689 aa23.31■■□□□ 1.32
MSRA-201ENST00000317173 SYNJ2O15056 1496 aa23.26■■□□□ 1.31
MSRA-201ENST00000317173 CHMP7Q8WUX9 453 aaPredicted RBP23.25■■□□□ 1.31
MSRA-201ENST00000317173 KIF27Q86VH2 1401 aa23.18■■□□□ 1.3
MSRA-201ENST00000317173 RIMBP3CA6NJZ7 1639 aa23.16■■□□□ 1.3
MSRA-201ENST00000317173 RIMBP3BA6NNM3 1639 aa23.16■■□□□ 1.3
MSRA-201ENST00000317173 RIMBP3Q9UFD9 1639 aa23.16■■□□□ 1.3
MSRA-201ENST00000317173 ARHGEF11O15085 1522 aa23.16■■□□□ 1.3
MSRA-201ENST00000317173 ERICH3Q5RHP9 1530 aa23.16■■□□□ 1.3
MSRA-201ENST00000317173 RUSC2Q8N2Y8 1516 aa23.14■■□□□ 1.3
MSRA-201ENST00000317173 ADAMTS12P58397 1594 aa23.13■■□□□ 1.29
MSRA-201ENST00000317173 CLASP1Q7Z460 1538 aa23.13■■□□□ 1.29
MSRA-201ENST00000317173 FHAD1B1AJZ9 1412 aa23.1■■□□□ 1.29
MSRA-201ENST00000317173 FAM9AQ8IZU1 332 aaPredicted RBP23.09■■□□□ 1.29
MSRA-201ENST00000317173 GRIN2AQ12879 1464 aa23.08■■□□□ 1.29
MSRA-201ENST00000317173 CSRNP3Q8WYN3 585 aa23.08■■□□□ 1.28
MSRA-201ENST00000317173 KIF21BO75037 1637 aa23.01■■□□□ 1.27
MSRA-201ENST00000317173 NUP160Q12769 1436 aa23■■□□□ 1.27
MSRA-201ENST00000317173 ARAP1Q96P48 1450 aa22.95■■□□□ 1.26
MSRA-201ENST00000317173 CEP170Q5SW79 1584 aa22.95■■□□□ 1.26
MSRA-201ENST00000317173 CUL7Q14999 1698 aa22.95■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 119.8 ms