RNA–Protein interactions for RNA: ENST00000276585.8

MRPS28-201, Transcript of mitochondrial ribosomal protein S28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MRPS28, Length 850 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRPS28-201ENST00000276585 NISCHQ9Y2I1 1504 aa30.99■■■□□ 2.55
MRPS28-201ENST00000276585 ABCC9O60706 1549 aa29.27■■■□□ 2.28
MRPS28-201ENST00000276585 DNAJC5BQ9UF47 199 aa28.28■■■□□ 2.12
MRPS28-201ENST00000276585 CCDC180Q9P1Z9 1646 aa28.2■■■□□ 2.1
MRPS28-201ENST00000276585 RB1CC1Q8TDY2 1594 aa27.37■■□□□ 1.97
MRPS28-201ENST00000276585 PABPN1Q86U42 306 aaKnown RBP eCLIP27.12■■□□□ 1.93
MRPS28-201ENST00000276585 NACADO15069 1562 aa26.92■■□□□ 1.9
MRPS28-201ENST00000276585 DCAF8L2P0C7V8 631 aa26.75■■□□□ 1.87
MRPS28-201ENST00000276585 DNAJC5Q9H3Z4 198 aa26.7■■□□□ 1.86
MRPS28-201ENST00000276585 UNC13AQ9UPW8 1703 aa26.68■■□□□ 1.86
MRPS28-201ENST00000276585 BICRAQ9NZM4 1560 aa26.56■■□□□ 1.84
MRPS28-201ENST00000276585 CECR2Q9BXF3 1484 aa26.46■■□□□ 1.83
MRPS28-201ENST00000276585 CC2D2AQ9P2K1 1620 aa26.33■■□□□ 1.81
MRPS28-201ENST00000276585 MYO15BQ96JP2 1530 aa26.18■■□□□ 1.78
MRPS28-201ENST00000276585 SHROOM4Q9ULL8 1493 aa26.11■■□□□ 1.77
MRPS28-201ENST00000276585 EIF4G1Q04637 1599 aaKnown RBP26.03■■□□□ 1.76
MRPS28-201ENST00000276585 SCRIBQ14160 1630 aa25.72■■□□□ 1.71
MRPS28-201ENST00000276585 CUX2O14529 1486 aa25.59■■□□□ 1.69
MRPS28-201ENST00000276585 DCAF1Q9Y4B6 1507 aa25.49■■□□□ 1.67
MRPS28-201ENST00000276585 ZCCHC6Q5VYS8 1495 aaKnown RBP25.47■■□□□ 1.67
MRPS28-201ENST00000276585 ERCC6Q03468 1493 aa25.38■■□□□ 1.65
MRPS28-201ENST00000276585 TRIM41Q8WV44 630 aa25.24■■□□□ 1.63
MRPS28-201ENST00000276585 NCAPD3P42695 1498 aa24.87■■□□□ 1.57
MRPS28-201ENST00000276585 NESP48681 1621 aa24.83■■□□□ 1.57
MRPS28-201ENST00000276585 AEBP2Q6ZN18 517 aaPredicted RBP24.78■■□□□ 1.56
MRPS28-201ENST00000276585 THOC2Q8NI27 1593 aaKnown RBP24.74■■□□□ 1.55
MRPS28-201ENST00000276585 ATAD2BQ9ULI0 1458 aa24.68■■□□□ 1.54
MRPS28-201ENST00000276585 SMARCA2P51531 1590 aa24.61■■□□□ 1.53
MRPS28-201ENST00000276585 HMGXB3Q12766 1538 aa24.59■■□□□ 1.53
MRPS28-201ENST00000276585 LAMC3Q9Y6N6 1575 aa24.47■■□□□ 1.51
MRPS28-201ENST00000276585 KIF21AQ7Z4S6 1674 aa24.44■■□□□ 1.5
MRPS28-201ENST00000276585 BAZ1BQ9UIG0 1483 aaKnown RBP24.42■■□□□ 1.5
MRPS28-201ENST00000276585 PDS5BQ9NTI5 1447 aa24.41■■□□□ 1.5
MRPS28-201ENST00000276585 SMARCA4P51532 1647 aa24.39■■□□□ 1.49
MRPS28-201ENST00000276585 BAZ1AQ9NRL2 1556 aaPredicted RBP24.33■■□□□ 1.48
MRPS28-201ENST00000276585 OSCARQ8IYS5 282 aa24.3■■□□□ 1.48
MRPS28-201ENST00000276585 MRC2Q9UBG0 1479 aa24.25■■□□□ 1.47
MRPS28-201ENST00000276585 WDR62O43379 1518 aa24.19■■□□□ 1.46
MRPS28-201ENST00000276585 PEG3Q9GZU2 1588 aa24.11■■□□□ 1.45
MRPS28-201ENST00000276585 CADPSQ9ULU8 1353 aa24.1■■□□□ 1.45
MRPS28-201ENST00000276585 RIMBP3CA6NJZ7 1639 aa24.05■■□□□ 1.44
MRPS28-201ENST00000276585 RIMBP3BA6NNM3 1639 aa24.05■■□□□ 1.44
MRPS28-201ENST00000276585 RIMBP3Q9UFD9 1639 aa24.05■■□□□ 1.44
MRPS28-201ENST00000276585 CEP164Q9UPV0 1460 aa23.97■■□□□ 1.43
MRPS28-201ENST00000276585 TRHP20396 242 aaPredicted RBP23.94■■□□□ 1.42
MRPS28-201ENST00000276585 ARHGEF11O15085 1522 aa23.89■■□□□ 1.41
MRPS28-201ENST00000276585 MROH2BQ7Z745 1585 aa23.88■■□□□ 1.41
MRPS28-201ENST00000276585 FANCD2Q9BXW9 1451 aa23.85■■□□□ 1.41
MRPS28-201ENST00000276585 CYB5RLQ6IPT4 315 aa23.83■■□□□ 1.41
MRPS28-201ENST00000276585 URB2Q14146 1524 aaKnown RBP23.69■■□□□ 1.38
MRPS28-201ENST00000276585 CFTRP13569 1480 aa23.6■■□□□ 1.37
MRPS28-201ENST00000276585 ARAP1Q96P48 1450 aa23.58■■□□□ 1.37
MRPS28-201ENST00000276585 ZNF608Q9ULD9 1512 aaPredicted RBP23.58■■□□□ 1.36
MRPS28-201ENST00000276585 WIZO95785 1651 aa23.54■■□□□ 1.36
MRPS28-201ENST00000276585 IFT140Q96RY7 1462 aa23.51■■□□□ 1.35
MRPS28-201ENST00000276585 RSF1Q96T23 1441 aaPredicted RBP23.4■■□□□ 1.34
MRPS28-201ENST00000276585 FBLN2P98095 1184 aa23.39■■□□□ 1.33
MRPS28-201ENST00000276585 EIF4G3O43432 1585 aaKnown RBP23.38■■□□□ 1.33
MRPS28-201ENST00000276585 CHD1O14646 1710 aa23.37■■□□□ 1.33
MRPS28-201ENST00000276585 CHIC1Q5VXU3 224 aa23.29■■□□□ 1.32
MRPS28-201ENST00000276585 TOPBP1Q92547 1522 aa23.27■■□□□ 1.32
MRPS28-201ENST00000276585 AQRO60306 1485 aaKnown RBP eCLIP23.25■■□□□ 1.31
MRPS28-201ENST00000276585 PRDM2Q13029 1718 aa23.22■■□□□ 1.31
MRPS28-201ENST00000276585 TOP2AP11388 1531 aaKnown RBP23.18■■□□□ 1.3
MRPS28-201ENST00000276585 ABCC8Q09428 1581 aa23.14■■□□□ 1.29
MRPS28-201ENST00000276585 TARBP1Q13395 1621 aaKnown RBP23.09■■□□□ 1.29
MRPS28-201ENST00000276585 DNMBPQ6XZF7 1577 aa23.09■■□□□ 1.29
MRPS28-201ENST00000276585 CLASP1Q7Z460 1538 aa23.08■■□□□ 1.28
MRPS28-201ENST00000276585 ILDR1Q86SU0 546 aaPredicted RBP23.03■■□□□ 1.28
MRPS28-201ENST00000276585 CHMP7Q8WUX9 453 aaPredicted RBP23.02■■□□□ 1.28
MRPS28-201ENST00000276585 SYNJ1O43426 1573 aa23.01■■□□□ 1.27
MRPS28-201ENST00000276585 SNAPC4Q5SXM2 1469 aa22.99■■□□□ 1.27
MRPS28-201ENST00000276585 TDRD9Q8NDG6 1382 aaKnown RBP22.97■■□□□ 1.27
MRPS28-201ENST00000276585 POLA1P09884 1462 aaPredicted RBP22.97■■□□□ 1.27
MRPS28-201ENST00000276585 GAPVD1Q14C86 1478 aa22.97■■□□□ 1.27
MRPS28-201ENST00000276585 CCDC88BA6NC98 1476 aa22.94■■□□□ 1.26
MRPS28-201ENST00000276585 RAD54L2Q9Y4B4 1467 aa22.92■■□□□ 1.26
MRPS28-201ENST00000276585 SOGA1O94964 1423 aa22.87■■□□□ 1.25
MRPS28-201ENST00000276585 MAGI1Q96QZ7 1491 aaPredicted RBP22.85■■□□□ 1.25
MRPS28-201ENST00000276585 SYNJ2O15056 1496 aa22.8■■□□□ 1.24
MRPS28-201ENST00000276585 WDR97A6NE52 1622 aa22.79■■□□□ 1.24
MRPS28-201ENST00000276585 GRIN2BQ13224 1484 aa22.78■■□□□ 1.24
MRPS28-201ENST00000276585 FGD5Q6ZNL6 1462 aa22.7■■□□□ 1.22
MRPS28-201ENST00000276585 KDM4FA0A1W2PPD8 638 aa22.67■■□□□ 1.22
MRPS28-201ENST00000276585 ERCC6L2Q5T890 1561 aa22.67■■□□□ 1.22
MRPS28-201ENST00000276585 KIF13AQ9H1H9 1805 aa22.64■■□□□ 1.22
MRPS28-201ENST00000276585 PBRM1Q86U86 1689 aa22.58■■□□□ 1.2
MRPS28-201ENST00000276585 FAM69CQ0P6D2 419 aa22.55■■□□□ 1.2
MRPS28-201ENST00000276585 CEP170Q5SW79 1584 aa22.55■■□□□ 1.2
MRPS28-201ENST00000276585 CUX1P39880 1505 aa22.5■■□□□ 1.19
MRPS28-201ENST00000276585 GRIN2AQ12879 1464 aa22.47■■□□□ 1.19
MRPS28-201ENST00000276585 KDM6BO15054 1643 aa22.46■■□□□ 1.19
MRPS28-201ENST00000276585 ABCC10Q5T3U5 1492 aa22.45■■□□□ 1.18
MRPS28-201ENST00000276585 NUP160Q12769 1436 aa22.41■■□□□ 1.18
MRPS28-201ENST00000276585 NPM1P06748 294 aaKnown RBP eCLIP22.4■■□□□ 1.18
MRPS28-201ENST00000276585 ABCA5Q8WWZ7 1642 aa22.39■■□□□ 1.18
MRPS28-201ENST00000276585 SHROOM2Q13796 1616 aa22.39■■□□□ 1.17
MRPS28-201ENST00000276585 ABCA10Q8WWZ4 1543 aa22.36■■□□□ 1.17
MRPS28-201ENST00000276585 DIP2BQ9P265 1576 aa22.35■■□□□ 1.17
MRPS28-201ENST00000276585 PRG4Q92954 1404 aaPredicted RBP22.33■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms