RNA–Protein interactions for RNA: ENST00000263309.7

CLNS1A-201, Transcript of chloride nucleotide-sensitive channel 1A, humanhuman

TSL 3 BASIC

Gene CLNS1A, Length 1,172 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLNS1A-201ENST00000263309 NISCHQ9Y2I1 1504 aa29.41■■■□□ 2.3
CLNS1A-201ENST00000263309 CCDC180Q9P1Z9 1646 aa26.03■■□□□ 1.76
CLNS1A-201ENST00000263309 ABCC9O60706 1549 aa25.78■■□□□ 1.72
CLNS1A-201ENST00000263309 DCAF8L2P0C7V8 631 aa24.9■■□□□ 1.58
CLNS1A-201ENST00000263309 NACADO15069 1562 aa24.54■■□□□ 1.52
CLNS1A-201ENST00000263309 RB1CC1Q8TDY2 1594 aa24.54■■□□□ 1.52
CLNS1A-201ENST00000263309 DNAJC5BQ9UF47 199 aa24.51■■□□□ 1.51
CLNS1A-201ENST00000263309 ZCCHC6Q5VYS8 1495 aaKnown RBP24.47■■□□□ 1.51
CLNS1A-201ENST00000263309 MYO15BQ96JP2 1530 aa24.42■■□□□ 1.5
CLNS1A-201ENST00000263309 DCAF1Q9Y4B6 1507 aa24.36■■□□□ 1.49
CLNS1A-201ENST00000263309 PABPN1Q86U42 306 aaKnown RBP eCLIP23.97■■□□□ 1.43
CLNS1A-201ENST00000263309 SCRIBQ14160 1630 aa23.75■■□□□ 1.39
CLNS1A-201ENST00000263309 UNC13AQ9UPW8 1703 aa23.75■■□□□ 1.39
CLNS1A-201ENST00000263309 BICRAQ9NZM4 1560 aa23.74■■□□□ 1.39
CLNS1A-201ENST00000263309 SHROOM4Q9ULL8 1493 aa23.56■■□□□ 1.36
CLNS1A-201ENST00000263309 CECR2Q9BXF3 1484 aa23.26■■□□□ 1.31
CLNS1A-201ENST00000263309 CC2D2AQ9P2K1 1620 aa23.25■■□□□ 1.31
CLNS1A-201ENST00000263309 EIF4G1Q04637 1599 aaKnown RBP23.16■■□□□ 1.3
CLNS1A-201ENST00000263309 BAZ1AQ9NRL2 1556 aaPredicted RBP22.87■■□□□ 1.25
CLNS1A-201ENST00000263309 SMARCA4P51532 1647 aa22.73■■□□□ 1.23
CLNS1A-201ENST00000263309 DNAJC5Q9H3Z4 198 aa22.7■■□□□ 1.22
CLNS1A-201ENST00000263309 SMARCA2P51531 1590 aa22.69■■□□□ 1.22
CLNS1A-201ENST00000263309 NCAPD3P42695 1498 aa22.62■■□□□ 1.21
CLNS1A-201ENST00000263309 ATAD2BQ9ULI0 1458 aa22.62■■□□□ 1.21
CLNS1A-201ENST00000263309 MROH2BQ7Z745 1585 aa22.59■■□□□ 1.21
CLNS1A-201ENST00000263309 BAZ1BQ9UIG0 1483 aaKnown RBP22.54■■□□□ 1.2
CLNS1A-201ENST00000263309 PEG3Q9GZU2 1588 aa22.49■■□□□ 1.19
CLNS1A-201ENST00000263309 RSF1Q96T23 1441 aaPredicted RBP22.48■■□□□ 1.19
CLNS1A-201ENST00000263309 HMGXB3Q12766 1538 aa22.47■■□□□ 1.19
CLNS1A-201ENST00000263309 CUX2O14529 1486 aa22.34■■□□□ 1.17
CLNS1A-201ENST00000263309 WIZO95785 1651 aa22.34■■□□□ 1.17
CLNS1A-201ENST00000263309 SUPT5HO00267 1087 aaKnown RBP22.32■■□□□ 1.16
CLNS1A-201ENST00000263309 ERCC6Q03468 1493 aa22.24■■□□□ 1.15
CLNS1A-201ENST00000263309 TOP2AP11388 1531 aaKnown RBP22.21■■□□□ 1.15
CLNS1A-201ENST00000263309 NESP48681 1621 aa22.08■■□□□ 1.13
CLNS1A-201ENST00000263309 CADPSQ9ULU8 1353 aa22.05■■□□□ 1.12
CLNS1A-201ENST00000263309 PDS5BQ9NTI5 1447 aa22.01■■□□□ 1.11
CLNS1A-201ENST00000263309 LAMC3Q9Y6N6 1575 aa22■■□□□ 1.11
CLNS1A-201ENST00000263309 CCDC88BA6NC98 1476 aa21.96■■□□□ 1.11
CLNS1A-201ENST00000263309 AEBP2Q6ZN18 517 aaPredicted RBP21.96■■□□□ 1.11
CLNS1A-201ENST00000263309 THOC2Q8NI27 1593 aaKnown RBP21.89■■□□□ 1.09
CLNS1A-201ENST00000263309 CFTRP13569 1480 aa21.86■■□□□ 1.09
CLNS1A-201ENST00000263309 FANCD2Q9BXW9 1451 aa21.74■■□□□ 1.07
CLNS1A-201ENST00000263309 CEP164Q9UPV0 1460 aa21.73■■□□□ 1.07
CLNS1A-201ENST00000263309 KIF21AQ7Z4S6 1674 aa21.69■■□□□ 1.06
CLNS1A-201ENST00000263309 MRC2Q9UBG0 1479 aa21.63■■□□□ 1.05
CLNS1A-201ENST00000263309 ABCC8Q09428 1581 aa21.59■■□□□ 1.05
CLNS1A-201ENST00000263309 PRDM2Q13029 1718 aa21.57■■□□□ 1.04
CLNS1A-201ENST00000263309 WDR62O43379 1518 aa21.55■■□□□ 1.04
CLNS1A-201ENST00000263309 TRIM41Q8WV44 630 aa21.5■■□□□ 1.03
CLNS1A-201ENST00000263309 URB2Q14146 1524 aaKnown RBP21.37■■□□□ 1.01
CLNS1A-201ENST00000263309 DNMBPQ6XZF7 1577 aa21.36■■□□□ 1.01
CLNS1A-201ENST00000263309 TOPBP1Q92547 1522 aa21.35■■□□□ 1.01
CLNS1A-201ENST00000263309 WRNQ14191 1432 aaPredicted RBP eCLIP21.3■■□□□ 1
CLNS1A-201ENST00000263309 IFT140Q96RY7 1462 aa21.28■■□□□ 1
CLNS1A-201ENST00000263309 OSCARQ8IYS5 282 aa21.27■■□□□ 1
CLNS1A-201ENST00000263309 SOGA1O94964 1423 aa21.26■□□□□ 0.99
CLNS1A-201ENST00000263309 FGD5Q6ZNL6 1462 aa21.18■□□□□ 0.98
CLNS1A-201ENST00000263309 CUX1P39880 1505 aa21.18■□□□□ 0.98
CLNS1A-201ENST00000263309 POLA1P09884 1462 aaPredicted RBP21.17■□□□□ 0.98
CLNS1A-201ENST00000263309 TOP2BQ02880 1626 aa21.11■□□□□ 0.97
CLNS1A-201ENST00000263309 RAD54L2Q9Y4B4 1467 aa21.07■□□□□ 0.96
CLNS1A-201ENST00000263309 BIVM-ERCC5R4GMW8 1640 aa21.05■□□□□ 0.96
CLNS1A-201ENST00000263309 TDRD9Q8NDG6 1382 aaKnown RBP21.05■□□□□ 0.96
CLNS1A-201ENST00000263309 ZNF608Q9ULD9 1512 aaPredicted RBP21.04■□□□□ 0.96
CLNS1A-201ENST00000263309 SYNJ1O43426 1573 aa21.02■□□□□ 0.96
CLNS1A-201ENST00000263309 WDR97A6NE52 1622 aa21.02■□□□□ 0.96
CLNS1A-201ENST00000263309 AQRO60306 1485 aaKnown RBP eCLIP21.01■□□□□ 0.957e-8■■■■□ 26.4
CLNS1A-201ENST00000263309 TARBP1Q13395 1621 aaKnown RBP21■□□□□ 0.95
CLNS1A-201ENST00000263309 FBLN2P98095 1184 aa20.99■□□□□ 0.95
CLNS1A-201ENST00000263309 RIMBP3CA6NJZ7 1639 aa20.99■□□□□ 0.95
CLNS1A-201ENST00000263309 RIMBP3BA6NNM3 1639 aa20.99■□□□□ 0.95
CLNS1A-201ENST00000263309 RIMBP3Q9UFD9 1639 aa20.99■□□□□ 0.95
CLNS1A-201ENST00000263309 ABCA10Q8WWZ4 1543 aa20.99■□□□□ 0.95
CLNS1A-201ENST00000263309 CHMP7Q8WUX9 453 aaPredicted RBP20.97■□□□□ 0.95
CLNS1A-201ENST00000263309 GAPVD1Q14C86 1478 aa20.96■□□□□ 0.95
CLNS1A-201ENST00000263309 GRIN2BQ13224 1484 aa20.95■□□□□ 0.94
CLNS1A-201ENST00000263309 KIF27Q86VH2 1401 aa20.94■□□□□ 0.94
CLNS1A-201ENST00000263309 ARHGEF11O15085 1522 aa20.94■□□□□ 0.94
CLNS1A-201ENST00000263309 EIF4G3O43432 1585 aaKnown RBP20.91■□□□□ 0.94
CLNS1A-201ENST00000263309 MAGI1Q96QZ7 1491 aaPredicted RBP20.85■□□□□ 0.93
CLNS1A-201ENST00000263309 CHIC1Q5VXU3 224 aa20.82■□□□□ 0.92
CLNS1A-201ENST00000263309 SNAPC4Q5SXM2 1469 aa20.8■□□□□ 0.92
CLNS1A-201ENST00000263309 CYB5RLQ6IPT4 315 aa20.79■□□□□ 0.92
CLNS1A-201ENST00000263309 ERICH3Q5RHP9 1530 aa20.78■□□□□ 0.92
CLNS1A-201ENST00000263309 ABCA5Q8WWZ7 1642 aa20.76■□□□□ 0.91
CLNS1A-201ENST00000263309 SYNJ2O15056 1496 aa20.75■□□□□ 0.91
CLNS1A-201ENST00000263309 FHAD1B1AJZ9 1412 aa20.75■□□□□ 0.91
CLNS1A-201ENST00000263309 ARAP1Q96P48 1450 aa20.73■□□□□ 0.91
CLNS1A-201ENST00000263309 PBRM1Q86U86 1689 aa20.72■□□□□ 0.91
CLNS1A-201ENST00000263309 IGF1RP08069 1367 aa20.71■□□□□ 0.91
CLNS1A-201ENST00000263309 EEA1Q15075 1411 aa20.7■□□□□ 0.9
CLNS1A-201ENST00000263309 CHD1O14646 1710 aa20.69■□□□□ 0.9
CLNS1A-201ENST00000263309 CARMIL1Q5VZK9 1371 aa20.68■□□□□ 0.9
CLNS1A-201ENST00000263309 CSRNP3Q8WYN3 585 aa20.67■□□□□ 0.9
CLNS1A-201ENST00000263309 CUL7Q14999 1698 aa20.62■□□□□ 0.89
CLNS1A-201ENST00000263309 FAM9AQ8IZU1 332 aaPredicted RBP20.62■□□□□ 0.89
CLNS1A-201ENST00000263309 TRHP20396 242 aaPredicted RBP20.61■□□□□ 0.89
CLNS1A-201ENST00000263309 GRIN2AQ12879 1464 aa20.61■□□□□ 0.89
CLNS1A-201ENST00000263309 ADAMTS12P58397 1594 aa20.58■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms