RNA–Protein interactions for RNA: YPR110C

RPC40, Transcript of RNA polymerase subunit AC40, yeastyeast

Gene RPC40, Length 1,008 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPC40YPR110C MKK2P32491 506 aa4.38□□□□□ -1.71
RPC40YPR110C TYW3P53177 273 aa4.38□□□□□ -1.71
RPC40YPR110C TDA5Q06417 326 aaKnown RBP4.38□□□□□ -1.71
RPC40YPR110C ELG1Q12050 791 aa4.38□□□□□ -1.71
RPC40YPR110C YPR053CQ6Q5F3 151 aa4.38□□□□□ -1.71
RPC40YPR110C TRP2P00899 507 aaKnown RBP4.37□□□□□ -1.71
RPC40YPR110C YKL069WP36088 180 aa4.37□□□□□ -1.71
RPC40YPR110C REI1P38344 393 aaPredicted RBP4.37□□□□□ -1.71
RPC40YPR110C DSE4P53753 1117 aa4.37□□□□□ -1.71
RPC40YPR110C RPN4Q03465 531 aa4.37□□□□□ -1.71
RPC40YPR110C SHE9Q04172 456 aa4.37□□□□□ -1.71
RPC40YPR110C FAL1Q12099 399 aaKnown RBP4.37□□□□□ -1.71
RPC40YPR110C DBP5P20449 482 aaKnown RBP4.36□□□□□ -1.71
RPC40YPR110C PRI2P20457 528 aa4.36□□□□□ -1.71
RPC40YPR110C SYP1P25623 870 aaKnown RBP4.36□□□□□ -1.71
RPC40YPR110C SBA1P28707 216 aaKnown RBP4.36□□□□□ -1.71
RPC40YPR110C SRP40P32583 406 aaPredicted RBP4.36□□□□□ -1.71
RPC40YPR110C AFG2P32794 780 aa4.36□□□□□ -1.71
RPC40YPR110C MAE1P36013 669 aaKnown RBP4.36□□□□□ -1.71
RPC40YPR110C NAN1Q02931 896 aaKnown RBP4.36□□□□□ -1.71
RPC40YPR110C TIF35Q04067 274 aaKnown RBP4.36□□□□□ -1.71
RPC40YPR110C SPO20Q04359 397 aa4.36□□□□□ -1.71
RPC40YPR110C BDF2Q07442 638 aa4.36□□□□□ -1.71
RPC40YPR110C ERS1P17261 260 aa4.35□□□□□ -1.71
RPC40YPR110C BAS1P22035 811 aa4.35□□□□□ -1.71
RPC40YPR110C YCK2P23292 546 aaKnown RBP4.35□□□□□ -1.71
RPC40YPR110C NMD2P38798 1089 aaKnown RBP4.35□□□□□ -1.71
RPC40YPR110C CNN1P43618 361 aa4.35□□□□□ -1.71
RPC40YPR110C YGR045CP53229 120 aa4.35□□□□□ -1.71
RPC40YPR110C YNR014WP53719 212 aa4.35□□□□□ -1.71
RPC40YPR110C RAD4P14736 754 aa4.34□□□□□ -1.71
RPC40YPR110C MRP8P35719 219 aa4.34□□□□□ -1.71
RPC40YPR110C SEA4P38164 1038 aa4.34□□□□□ -1.71
RPC40YPR110C SKN7P38889 622 aa4.34□□□□□ -1.71
RPC40YPR110C YAR028WP39548 234 aa4.34□□□□□ -1.71
RPC40YPR110C BUD6P41697 788 aa4.34□□□□□ -1.71
RPC40YPR110C SPO74P45819 413 aa4.34□□□□□ -1.71
RPC40YPR110C NRD1P53617 575 aaKnown RBP RIP-Chip data4.34□□□□□ -1.71not detected
RPC40YPR110C RAT1Q02792 1006 aaKnown RBP4.34□□□□□ -1.71
RPC40YPR110C LAP2Q10740 671 aa4.34□□□□□ -1.71
RPC40YPR110C RKM4Q12504 494 aa4.34□□□□□ -1.71
RPC40YPR110C SFA1P32771 386 aa4.33□□□□□ -1.72
RPC40YPR110C STE5P32917 917 aa4.33□□□□□ -1.72
RPC40YPR110C YKL091CP33324 310 aaKnown RBP4.33□□□□□ -1.72
RPC40YPR110C VBA5P36172 582 aa4.33□□□□□ -1.72
RPC40YPR110C RGD1P38339 666 aa4.33□□□□□ -1.72
RPC40YPR110C RRM3P38766 723 aa4.33□□□□□ -1.72
RPC40YPR110C SLN1P39928 1220 aaPredicted RBP4.33□□□□□ -1.72
RPC40YPR110C IRR1P40541 1150 aa4.33□□□□□ -1.72
RPC40YPR110C MPH1P40562 993 aa4.33□□□□□ -1.72
RPC40YPR110C OSW7P43611 510 aa4.33□□□□□ -1.72
RPC40YPR110C VPS53P47061 822 aa4.33□□□□□ -1.72
RPC40YPR110C HNT2P49775 206 aa4.33□□□□□ -1.72
RPC40YPR110C NCE103P53615 221 aa4.33□□□□□ -1.72
RPC40YPR110C DOS2P54858 310 aa4.33□□□□□ -1.72
RPC40YPR110C YMR187CQ03236 431 aa4.33□□□□□ -1.72
RPC40YPR110C YMR074CQ04773 145 aa4.33□□□□□ -1.72
RPC40YPR110C YLR225CQ05948 407 aaKnown RBP4.33□□□□□ -1.72
RPC40YPR110C AVO1Q08236 1176 aa4.33□□□□□ -1.72
RPC40YPR110C ALG6Q12001 544 aaKnown RBP4.33□□□□□ -1.72
RPC40YPR110C YOR223WQ12015 292 aa4.33□□□□□ -1.72
RPC40YPR110C CDC53Q12018 815 aaKnown RBP4.33□□□□□ -1.72
RPC40YPR110C TY1A-NL1Q12391 440 aaKnown RBP4.33□□□□□ -1.72
RPC40YPR110C DED1P06634 604 aaKnown RBP4.32□□□□□ -1.72
RPC40YPR110C CIT2P08679 460 aa4.32□□□□□ -1.72
RPC40YPR110C INO1P11986 533 aa4.32□□□□□ -1.72
RPC40YPR110C PIN4P34217 668 aaKnown RBP RIP-Chip data4.32□□□□□ -1.72not detected
RPC40YPR110C ALG3P38179 458 aa4.32□□□□□ -1.72
RPC40YPR110C PBY1P38254 753 aa4.32□□□□□ -1.72
RPC40YPR110C ATG14P38270 344 aa4.32□□□□□ -1.72
RPC40YPR110C MCX1P38323 520 aaPredicted RBP4.32□□□□□ -1.72
RPC40YPR110C HSE1P38753 452 aa4.32□□□□□ -1.72
RPC40YPR110C SNF7P39929 240 aaKnown RBP4.32□□□□□ -1.72
RPC40YPR110C BOI2P39969 1040 aa4.32□□□□□ -1.72
RPC40YPR110C KIP3P53086 805 aaKnown RBP4.32□□□□□ -1.72
RPC40YPR110C HUL5P53119 910 aa4.32□□□□□ -1.72
RPC40YPR110C BUD9P53226 547 aa4.32□□□□□ -1.72
RPC40YPR110C FMP25Q08023 583 aa4.32□□□□□ -1.72
RPC40YPR110C PPM2Q08282 695 aa4.32□□□□□ -1.72
RPC40YPR110C YOR131CQ12486 218 aa4.32□□□□□ -1.72
RPC40YPR110C PTC5Q12511 572 aa4.32□□□□□ -1.72
RPC40YPR110C ABD1P32783 436 aaPredicted RBP4.31□□□□□ -1.72
RPC40YPR110C NNK1P36003 928 aa4.31□□□□□ -1.72
RPC40YPR110C PBP2P38151 413 aaKnown RBP RIP-Chip data4.31□□□□□ -1.72not detected
RPC40YPR110C YBR184WP38299 523 aa4.31□□□□□ -1.72
RPC40YPR110C YHR020WP38708 688 aaKnown RBP4.31□□□□□ -1.72
RPC40YPR110C QNS1P38795 714 aaKnown RBP4.31□□□□□ -1.72
RPC40YPR110C RNH70P53331 553 aa4.31□□□□□ -1.72
RPC40YPR110C ELA1P53861 379 aaPredicted RBP4.31□□□□□ -1.72
RPC40YPR110C DOT1Q04089 582 aaKnown RBP4.31□□□□□ -1.72
RPC40YPR110C ESC2Q06340 456 aa4.31□□□□□ -1.72
RPC40YPR110C AOS1Q06624 347 aa4.31□□□□□ -1.72
RPC40YPR110C SPO75Q07798 868 aa4.31□□□□□ -1.72
RPC40YPR110C MCA1Q08601 432 aa4.31□□□□□ -1.72
RPC40YPR110C YPL260WQ08977 551 aa4.31□□□□□ -1.72
RPC40YPR110C YPL066WQ12194 479 aa4.31□□□□□ -1.72
RPC40YPR110C YDR215CQ12240 137 aa4.31□□□□□ -1.72
RPC40YPR110C RPL8BP29453 256 aaKnown RBP4.3□□□□□ -1.72
RPC40YPR110C MOT2P34909 587 aaKnown RBP4.3□□□□□ -1.72
RPC40YPR110C RRP14P36080 434 aaKnown RBP4.3□□□□□ -1.72
Retrieved 100 of 5,963 RNA–protein pairs in 49.2 ms