RNA–Protein interactions for RNA: YPR088C

SRP54, Transcript of Signal recognition particle (SRP) subunit (homolog of mammalian SRP54), yeastyeast

Gene SRP54, Length 1,626 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SRP54YPR088C VIP1Q06685 1146 aaKnown RBP9.42□□□□□ -0.9
SRP54YPR088C MCM3P24279 971 aaKnown RBP9.42□□□□□ -0.9
SRP54YPR088C URA1P28272 314 aaPredicted RBP9.42□□□□□ -0.9
SRP54YPR088C YPT11P48559 417 aa9.42□□□□□ -0.9
SRP54YPR088C RET3P53600 189 aa9.42□□□□□ -0.9
SRP54YPR088C YOR296WQ08748 1289 aa9.42□□□□□ -0.9
SRP54YPR088C GIN4Q12263 1142 aa9.42□□□□□ -0.9
SRP54YPR088C THR4P16120 514 aaKnown RBP9.41□□□□□ -0.9
SRP54YPR088C SAS3P34218 831 aa9.41□□□□□ -0.9
SRP54YPR088C CUE3P53137 624 aaKnown RBP9.41□□□□□ -0.9
SRP54YPR088C RTC4P53850 401 aa9.41□□□□□ -0.9
SRP54YPR088C EIS1Q05050 843 aaKnown RBP9.41□□□□□ -0.9
SRP54YPR088C SMD2Q06217 110 aaKnown RBP9.41□□□□□ -0.9
SRP54YPR088C SUE1Q06524 206 aa9.41□□□□□ -0.9
SRP54YPR088C UTP4Q06679 776 aaKnown RBP9.41□□□□□ -0.9
SRP54YPR088C PTC5Q12511 572 aa9.41□□□□□ -0.9
SRP54YPR088C GPA1P08539 472 aa9.4□□□□□ -0.9
SRP54YPR088C ALG1P16661 449 aa9.4□□□□□ -0.9
SRP54YPR088C YKT6P36015 200 aaKnown RBP9.4□□□□□ -0.9
SRP54YPR088C RKM3P38222 552 aa9.4□□□□□ -0.9
SRP54YPR088C NPR3P38742 1146 aa9.4□□□□□ -0.9
SRP54YPR088C YER130CP39959 443 aa9.4□□□□□ -0.9
SRP54YPR088C RRT6P53117 311 aaPredicted RBP9.4□□□□□ -0.9
SRP54YPR088C RSC1P53236 928 aa9.4□□□□□ -0.9
SRP54YPR088C TRS33Q99394 268 aa9.4□□□□□ -0.9
SRP54YPR088C RPL22AP05749 121 aaKnown RBP9.39□□□□□ -0.91
SRP54YPR088C MCM4P30665 933 aaKnown RBP9.39□□□□□ -0.91
SRP54YPR088C OCT1P35999 772 aa9.39□□□□□ -0.91
SRP54YPR088C PNT1P38969 423 aa9.39□□□□□ -0.91
SRP54YPR088C BNI5P53890 448 aaKnown RBP9.39□□□□□ -0.91
SRP54YPR088C MMR1Q06324 491 aa9.39□□□□□ -0.91
SRP54YPR088C TYW1Q08960 810 aaKnown RBP9.39□□□□□ -0.91
SRP54YPR088C PWP2P25635 923 aaKnown RBP9.38□□□□□ -0.91
SRP54YPR088C STT3P39007 718 aaKnown RBP9.38□□□□□ -0.91
SRP54YPR088C YIL089WP40500 205 aa9.38□□□□□ -0.91
SRP54YPR088C YML037CQ03703 340 aa9.38□□□□□ -0.91
SRP54YPR088C TRS120Q04183 1289 aa9.38□□□□□ -0.91
SRP54YPR088C LCD1Q04377 747 aa9.38□□□□□ -0.91
SRP54YPR088C CSM3Q04659 317 aa9.38□□□□□ -0.91
SRP54YPR088C SLK19Q08581 821 aaKnown RBP9.38□□□□□ -0.91
SRP54YPR088C BMH1P29311 267 aaKnown RBP9.38□□□□□ -0.91
SRP54YPR088C LYS14P40971 790 aa9.38□□□□□ -0.91
SRP54YPR088C DSE4P53753 1117 aa9.38□□□□□ -0.91
SRP54YPR088C FBP1P09201 348 aa9.37□□□□□ -0.91
SRP54YPR088C RAD18P10862 487 aa9.37□□□□□ -0.91
SRP54YPR088C TAF13P11747 167 aa9.37□□□□□ -0.91
SRP54YPR088C SSA4P22202 642 aaKnown RBP9.37□□□□□ -0.91
SRP54YPR088C PER1P25625 357 aa9.37□□□□□ -0.91
SRP54YPR088C PEX29Q03370 554 aa9.37□□□□□ -0.91
SRP54YPR088C SGD1Q06132 899 aa9.37□□□□□ -0.91
SRP54YPR088C SRO9P25567 434 aaKnown RBP9.36□□□□□ -0.91
SRP54YPR088C PHO88P38264 188 aaPredicted RBP9.36□□□□□ -0.91
SRP54YPR088C RRM3P38766 723 aa9.36□□□□□ -0.91
SRP54YPR088C PAN5P38787 379 aa9.36□□□□□ -0.91
SRP54YPR088C VAB2P40003 282 aa9.36□□□□□ -0.91
SRP54YPR088C DAK2P43550 591 aa9.36□□□□□ -0.91
SRP54YPR088C FMS1P50264 508 aa9.36□□□□□ -0.91
SRP54YPR088C VMS1Q04311 632 aaKnown RBP9.36□□□□□ -0.91
SRP54YPR088C HIS4P00815 799 aaKnown RBP9.35□□□□□ -0.91
SRP54YPR088C CIT3P43635 486 aa9.35□□□□□ -0.91
SRP54YPR088C YJL007CP47080 104 aa9.35□□□□□ -0.91
SRP54YPR088C YPR148CQ06523 435 aa9.35□□□□□ -0.91
SRP54YPR088C YDJ1P25491 409 aaKnown RBP9.34□□□□□ -0.91
SRP54YPR088C NDT80P38830 627 aa9.34□□□□□ -0.91
SRP54YPR088C ATG32P40458 529 aa9.34□□□□□ -0.91
SRP54YPR088C YGR153WP48238 217 aa9.34□□□□□ -0.91
SRP54YPR088C SDA1P53313 767 aaKnown RBP9.34□□□□□ -0.91
SRP54YPR088C TUF1P02992 437 aaKnown RBP9.34□□□□□ -0.91
SRP54YPR088C ATE1P16639 503 aa9.34□□□□□ -0.91
SRP54YPR088C PCS60P38137 543 aaKnown RBP RIP-Chip data9.34□□□□□ -0.91not detected
SRP54YPR088C SUL1P38359 859 aa9.34□□□□□ -0.91
SRP54YPR088C UBX5Q06682 500 aa9.34□□□□□ -0.91
SRP54YPR088C OXR1Q08952 273 aa9.34□□□□□ -0.91
SRP54YPR088C GSY2P27472 705 aa9.33□□□□□ -0.92
SRP54YPR088C UGA4P32837 571 aa9.33□□□□□ -0.92
SRP54YPR088C TGL1P34163 548 aa9.33□□□□□ -0.92
SRP54YPR088C MRPL10P36520 322 aa9.33□□□□□ -0.92
SRP54YPR088C NET1P47035 1189 aa9.33□□□□□ -0.92
SRP54YPR088C ALD6P54115 500 aaKnown RBP9.33□□□□□ -0.92
SRP54YPR088C BUL2Q03758 920 aaKnown RBP9.33□□□□□ -0.92
SRP54YPR088C AIM33Q04516 312 aa9.33□□□□□ -0.92
SRP54YPR088C TMA64Q04600 565 aaKnown RBP9.33□□□□□ -0.92
SRP54YPR088C HIR1P32479 840 aa9.32□□□□□ -0.92
SRP54YPR088C SRP40P32583 406 aaPredicted RBP9.32□□□□□ -0.92
SRP54YPR088C SAC6P32599 642 aaKnown RBP9.32□□□□□ -0.92
SRP54YPR088C THI6P41835 540 aa9.32□□□□□ -0.92
SRP54YPR088C UBA2P52488 636 aa9.32□□□□□ -0.92
SRP54YPR088C LIF1P53150 421 aa9.32□□□□□ -0.92
SRP54YPR088C YGR273CP53329 174 aa9.32□□□□□ -0.92
SRP54YPR088C FOB1O13329 566 aa9.31□□□□□ -0.92
SRP54YPR088C PHR1P05066 565 aaKnown RBP RIP-Chip data9.31□□□□□ -0.92not detected
SRP54YPR088C SAM1P10659 382 aaKnown RBP9.31□□□□□ -0.92
SRP54YPR088C GSY1P23337 708 aa9.31□□□□□ -0.92
SRP54YPR088C CDC15P27636 974 aa9.31□□□□□ -0.92
SRP54YPR088C MCD4P36051 919 aa9.31□□□□□ -0.92
SRP54YPR088C ORC6P38826 435 aa9.31□□□□□ -0.92
SRP54YPR088C GAA1P39012 614 aa9.31□□□□□ -0.92
SRP54YPR088C MFM1Q02783 413 aa9.31□□□□□ -0.92
SRP54YPR088C OYE2Q03558 400 aaKnown RBP9.31□□□□□ -0.92
SRP54YPR088C GUD1Q07729 489 aa9.31□□□□□ -0.92
Retrieved 100 of 5,963 RNA–protein pairs in 45.9 ms