RNA–Protein interactions for RNA: YMR067C

UBX4, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX4, Length 1,251 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX4	YMR067C	YGR122W	P53272	402 aa		5	□□□□□ -1.61
UBX4	YMR067C	ORC3	P54790	616 aa		5	□□□□□ -1.61
UBX4	YMR067C	HRK1	Q08732	759 aa	Known RBP	5	□□□□□ -1.61
UBX4	YMR067C	TRE1	Q08919	783 aa		5	□□□□□ -1.61
UBX4	YMR067C	ADP1	P25371	1049 aa		4.99	□□□□□ -1.61
UBX4	YMR067C	SEA4	P38164	1038 aa		4.99	□□□□□ -1.61
UBX4	YMR067C	FAA3	P39002	694 aa		4.99	□□□□□ -1.61
UBX4	YMR067C	AVT1	P47082	602 aa		4.99	□□□□□ -1.61
UBX4	YMR067C	ECL1	P48235	211 aa		4.99	□□□□□ -1.61
UBX4	YMR067C	YGL140C	P53120	1219 aa		4.99	□□□□□ -1.61
UBX4	YMR067C	EAR1	Q03212	550 aa		4.99	□□□□□ -1.61
UBX4	YMR067C	NOP8	Q08287	484 aa	Predicted RBP	4.99	□□□□□ -1.61
UBX4	YMR067C	PUS7	Q08647	676 aa	Known RBP	4.99	□□□□□ -1.61
UBX4	YMR067C	MCD1	Q12158	566 aa		4.99	□□□□□ -1.61
UBX4	YMR067C	YML020W	Q03722	664 aa		4.98	□□□□□ -1.61
UBX4	YMR067C	RSA3	Q05942	220 aa	Known RBP	4.98	□□□□□ -1.61
UBX4	YMR067C	YLR257W	Q06146	321 aa	Known RBP	4.98	□□□□□ -1.61
UBX4	YMR067C	TOS4	Q06266	489 aa		4.98	□□□□□ -1.61
UBX4	YMR067C	RET1	P22276	1149 aa	Known RBP	4.97	□□□□□ -1.61
UBX4	YMR067C	ADD66	P36040	267 aa		4.97	□□□□□ -1.61
UBX4	YMR067C	MGE1	P38523	228 aa		4.97	□□□□□ -1.61
UBX4	YMR067C	PEX7	P39108	375 aa		4.97	□□□□□ -1.61
UBX4	YMR067C	VPS53	P47061	822 aa		4.97	□□□□□ -1.61
UBX4	YMR067C	TPP1	Q03796	238 aa		4.97	□□□□□ -1.61
UBX4	YMR067C	DFG16	Q99234	619 aa		4.97	□□□□□ -1.61
UBX4	YMR067C	PRE9	P23638	258 aa	Known RBP	4.96	□□□□□ -1.62
UBX4	YMR067C	HSP78	P33416	811 aa		4.96	□□□□□ -1.62
UBX4	YMR067C	POL12	P38121	705 aa	Predicted RBP	4.96	□□□□□ -1.62
UBX4	YMR067C	NIT1	P40447	199 aa		4.96	□□□□□ -1.62
UBX4	YMR067C	ENT3	P47160	408 aa		4.96	□□□□□ -1.62
UBX4	YMR067C	ASF1	P32447	279 aa		4.95	□□□□□ -1.62
UBX4	YMR067C	MRPS18	P42847	217 aa		4.95	□□□□□ -1.62
UBX4	YMR067C	POL32	P47110	350 aa		4.95	□□□□□ -1.62
UBX4	YMR067C	SSY1	Q03770	852 aa		4.95	□□□□□ -1.62
UBX4	YMR067C	HEM13	P11353	328 aa	Known RBP	4.94	□□□□□ -1.62
UBX4	YMR067C	SRO9	P25567	434 aa	Known RBP	4.94	□□□□□ -1.62
UBX4	YMR067C	PRO1	P32264	428 aa		4.94	□□□□□ -1.62
UBX4	YMR067C	MDL2	P33311	773 aa		4.94	□□□□□ -1.62
UBX4	YMR067C	YHL012W	P38709	493 aa		4.94	□□□□□ -1.62
UBX4	YMR067C	QNS1	P38795	714 aa	Known RBP	4.94	□□□□□ -1.62
UBX4	YMR067C	PIC2	P40035	300 aa		4.94	□□□□□ -1.62
UBX4	YMR067C	YJR107W	P47145	328 aa		4.94	□□□□□ -1.62
UBX4	YMR067C	EST2	Q06163	884 aa		4.94	□□□□□ -1.62
UBX4	YMR067C	LPX1	Q12405	387 aa	Known RBP	4.94	□□□□□ -1.62
UBX4	YMR067C	SAM35	P14693	329 aa		4.93	□□□□□ -1.62
UBX4	YMR067C	CYC8	P14922	966 aa		4.93	□□□□□ -1.62
UBX4	YMR067C	HEM3	P28789	327 aa		4.93	□□□□□ -1.62
UBX4	YMR067C	LRG1	P35688	1017 aa		4.93	□□□□□ -1.62
UBX4	YMR067C	PTC7	P38797	343 aa		4.93	□□□□□ -1.62
UBX4	YMR067C	PRP43	P53131	767 aa	Known RBP	4.93	□□□□□ -1.62
UBX4	YMR067C	RAD2	P07276	1031 aa		4.92	□□□□□ -1.62
UBX4	YMR067C	SEG2	P34250	1132 aa		4.92	□□□□□ -1.62
UBX4	YMR067C	YJL045W	P47052	634 aa		4.92	□□□□□ -1.62
UBX4	YMR067C	YNR063W	P53749	607 aa		4.92	□□□□□ -1.62
UBX4	YMR067C	RRP15	Q06511	250 aa	Predicted RBP	4.92	□□□□□ -1.62
UBX4	YMR067C	SIW14	P53965	281 aa		4.91	□□□□□ -1.62
UBX4	YMR067C	YSC84	P32793	468 aa		4.9	□□□□□ -1.63
UBX4	YMR067C	AFG2	P32794	780 aa		4.9	□□□□□ -1.63
UBX4	YMR067C	RPS26A	P39938	119 aa	Known RBP	4.9	□□□□□ -1.63
UBX4	YMR067C	RPS26B	P39939	119 aa	Known RBP	4.9	□□□□□ -1.63
UBX4	YMR067C	GTS1	P40956	396 aa		4.9	□□□□□ -1.63
UBX4	YMR067C	ENV11	P53246	860 aa		4.9	□□□□□ -1.63
UBX4	YMR067C	ESF1	Q06344	628 aa	Known RBP	4.9	□□□□□ -1.63
UBX4	YMR067C	HDA2	Q06629	674 aa		4.9	□□□□□ -1.63
UBX4	YMR067C	NBA1	Q08229	501 aa	Known RBP	4.9	□□□□□ -1.63
UBX4	YMR067C	ATE1	P16639	503 aa		4.89	□□□□□ -1.63
UBX4	YMR067C	FOL2	P51601	243 aa	Known RBP	4.89	□□□□□ -1.63
UBX4	YMR067C	RMD1	Q03441	430 aa		4.89	□□□□□ -1.63
UBX4	YMR067C	YPL260W	Q08977	551 aa		4.89	□□□□□ -1.63
UBX4	YMR067C	PTC5	Q12511	572 aa		4.89	□□□□□ -1.63
UBX4	YMR067C	COQ4	O13525	335 aa		4.88	□□□□□ -1.63
UBX4	YMR067C	GAS1	P22146	559 aa	Known RBP	4.88	□□□□□ -1.63
UBX4	YMR067C	SEC8	P32855	1065 aa		4.88	□□□□□ -1.63
UBX4	YMR067C	TSA1	P34760	196 aa	Known RBP	4.88	□□□□□ -1.63
UBX4	YMR067C	ALG3	P38179	458 aa		4.88	□□□□□ -1.63
UBX4	YMR067C	CCZ1	P38273	704 aa		4.88	□□□□□ -1.63
UBX4	YMR067C	NMD3	P38861	518 aa	Known RBP	4.88	□□□□□ -1.63
UBX4	YMR067C	RPN3	P40016	523 aa	Known RBP	4.88	□□□□□ -1.63
UBX4	YMR067C	GNP1	P48813	663 aa		4.88	□□□□□ -1.63
UBX4	YMR067C	CDA2	Q06703	312 aa		4.88	□□□□□ -1.63
UBX4	YMR067C	RNQ1	P25367	405 aa		4.87	□□□□□ -1.63
UBX4	YMR067C	KIP1	P28742	1111 aa		4.87	□□□□□ -1.63
UBX4	YMR067C	BAP2	P38084	609 aa		4.87	□□□□□ -1.63
UBX4	YMR067C	UBP5	P39944	805 aa		4.87	□□□□□ -1.63
UBX4	YMR067C	FYV10	P40492	516 aa		4.87	□□□□□ -1.63
UBX4	YMR067C	TNA1	P53322	534 aa		4.87	□□□□□ -1.63
UBX4	YMR067C	RSC58	Q07979	502 aa		4.87	□□□□□ -1.63
UBX4	YMR067C	DED1	P06634	604 aa	Known RBP	4.86	□□□□□ -1.63
UBX4	YMR067C	MKK2	P32491	506 aa		4.86	□□□□□ -1.63
UBX4	YMR067C	RGD1	P38339	666 aa		4.86	□□□□□ -1.63
UBX4	YMR067C	MRL1	Q06815	381 aa		4.86	□□□□□ -1.63
UBX4	YMR067C	MCM2	P29469	868 aa		4.85	□□□□□ -1.63
UBX4	YMR067C	AIM26	P32858	118 aa		4.85	□□□□□ -1.63
UBX4	YMR067C	HXT13	P39924	564 aa		4.85	□□□□□ -1.63
UBX4	YMR067C	HXT17	P53631	564 aa		4.85	□□□□□ -1.63
UBX4	YMR067C	HXT15	P54854	567 aa		4.85	□□□□□ -1.63
UBX4	YMR067C	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	4.85	□□□□□ -1.63	not detected
UBX4	YMR067C	ROD1	Q02805	837 aa		4.85	□□□□□ -1.63
UBX4	YMR067C	HOS3	Q02959	697 aa	Known RBP	4.85	□□□□□ -1.63
UBX4	YMR067C	SPR28	Q04921	423 aa		4.85	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 18.2 ms