RNA–Protein interactions for RNA: YML112W

CTK3, Transcript of Gamma subunit of C-terminal domain kinase I, yeast

Gene CTK3, Length 891 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CTK3	YML112W	OYE3	P41816	400 aa	Predicted RBP	4.65	□□□□□ -1.67
CTK3	YML112W	RET1	P22276	1149 aa	Known RBP	4.64	□□□□□ -1.67
CTK3	YML112W	ATG14	P38270	344 aa		4.64	□□□□□ -1.67
CTK3	YML112W	XKS1	P42826	600 aa		4.64	□□□□□ -1.67
CTK3	YML112W	YGL140C	P53120	1219 aa		4.64	□□□□□ -1.67
CTK3	YML112W	YNR063W	P53749	607 aa		4.64	□□□□□ -1.67
CTK3	YML112W	LAP2	Q10740	671 aa		4.64	□□□□□ -1.67
CTK3	YML112W	YVC1	Q12324	675 aa		4.64	□□□□□ -1.67
CTK3	YML112W	RDH54	P38086	958 aa		4.63	□□□□□ -1.67
CTK3	YML112W	MGE1	P38523	228 aa		4.63	□□□□□ -1.67
CTK3	YML112W	POL32	P47110	350 aa		4.63	□□□□□ -1.67
CTK3	YML112W	TRE1	Q08919	783 aa		4.63	□□□□□ -1.67
CTK3	YML112W	SCP160	P06105	1222 aa	Known RBP RIP-Chip data	4.62	□□□□□ -1.67	not detected
CTK3	YML112W	HEM13	P11353	328 aa	Known RBP	4.62	□□□□□ -1.67
CTK3	YML112W	HEM3	P28789	327 aa		4.62	□□□□□ -1.67
CTK3	YML112W	SEG2	P34250	1132 aa		4.62	□□□□□ -1.67
CTK3	YML112W	ADD66	P36040	267 aa		4.62	□□□□□ -1.67
CTK3	YML112W	HSE1	P38753	452 aa		4.62	□□□□□ -1.67
CTK3	YML112W	PIC2	P40035	300 aa		4.62	□□□□□ -1.67
CTK3	YML112W	MRPS18	P42847	217 aa		4.62	□□□□□ -1.67
CTK3	YML112W	YGR122W	P53272	402 aa		4.62	□□□□□ -1.67
CTK3	YML112W	TPP1	Q03796	238 aa		4.62	□□□□□ -1.67
CTK3	YML112W	YLR257W	Q06146	321 aa	Known RBP	4.62	□□□□□ -1.67
CTK3	YML112W	NOP8	Q08287	484 aa	Predicted RBP	4.62	□□□□□ -1.67
CTK3	YML112W	PUS7	Q08647	676 aa	Known RBP	4.62	□□□□□ -1.67
CTK3	YML112W	ATE1	P16639	503 aa		4.61	□□□□□ -1.67
CTK3	YML112W	ADP1	P25371	1049 aa		4.61	□□□□□ -1.67
CTK3	YML112W	LRG1	P35688	1017 aa		4.61	□□□□□ -1.67
CTK3	YML112W	NMD3	P38861	518 aa	Known RBP	4.61	□□□□□ -1.67
CTK3	YML112W	PEX7	P39108	375 aa		4.61	□□□□□ -1.67
CTK3	YML112W	RPS26A	P39938	119 aa	Known RBP	4.61	□□□□□ -1.67
CTK3	YML112W	RPS26B	P39939	119 aa	Known RBP	4.61	□□□□□ -1.67
CTK3	YML112W	SSY1	Q03770	852 aa		4.61	□□□□□ -1.67
CTK3	YML112W	SEC23	P15303	768 aa	Known RBP	4.6	□□□□□ -1.67
CTK3	YML112W	RKM2	Q03942	479 aa		4.6	□□□□□ -1.67
CTK3	YML112W	RSA3	Q05942	220 aa	Known RBP	4.6	□□□□□ -1.67
CTK3	YML112W	EST2	Q06163	884 aa		4.6	□□□□□ -1.67
CTK3	YML112W	MCD1	Q12158	566 aa		4.6	□□□□□ -1.67
CTK3	YML112W	RAD2	P07276	1031 aa		4.59	□□□□□ -1.67
CTK3	YML112W	CYC8	P14922	966 aa		4.59	□□□□□ -1.67
CTK3	YML112W	PRE9	P23638	258 aa	Known RBP	4.59	□□□□□ -1.67
CTK3	YML112W	MCM2	P29469	868 aa		4.59	□□□□□ -1.67
CTK3	YML112W	PRO1	P32264	428 aa		4.59	□□□□□ -1.67
CTK3	YML112W	HSP78	P33416	811 aa		4.59	□□□□□ -1.67
CTK3	YML112W	POL12	P38121	705 aa	Predicted RBP	4.59	□□□□□ -1.67
CTK3	YML112W	QNS1	P38795	714 aa	Known RBP	4.59	□□□□□ -1.67
CTK3	YML112W	PTC7	P38797	343 aa		4.58	□□□□□ -1.68
CTK3	YML112W	TAF1	P46677	1066 aa		4.58	□□□□□ -1.68
CTK3	YML112W	VPS53	P47061	822 aa		4.58	□□□□□ -1.68
CTK3	YML112W	DFG16	Q99234	619 aa		4.58	□□□□□ -1.68
CTK3	YML112W	GTS1	P40956	396 aa		4.57	□□□□□ -1.68
CTK3	YML112W	YJR107W	P47145	328 aa		4.57	□□□□□ -1.68
CTK3	YML112W	RRP15	Q06511	250 aa	Predicted RBP	4.57	□□□□□ -1.68
CTK3	YML112W	HRK1	Q08732	759 aa	Known RBP	4.57	□□□□□ -1.68
CTK3	YML112W	DED1	P06634	604 aa	Known RBP	4.56	□□□□□ -1.68
CTK3	YML112W	TAF13	P11747	167 aa		4.56	□□□□□ -1.68
CTK3	YML112W	SAM35	P14693	329 aa		4.56	□□□□□ -1.68
CTK3	YML112W	YHL012W	P38709	493 aa		4.56	□□□□□ -1.68
CTK3	YML112W	ECL1	P48235	211 aa		4.56	□□□□□ -1.68
CTK3	YML112W	ORC3	P54790	616 aa		4.56	□□□□□ -1.68
CTK3	YML112W	SPR28	Q04921	423 aa		4.56	□□□□□ -1.68
CTK3	YML112W	HDA2	Q06629	674 aa		4.56	□□□□□ -1.68
CTK3	YML112W	AFG2	P32794	780 aa		4.55	□□□□□ -1.68
CTK3	YML112W	SEC8	P32855	1065 aa		4.55	□□□□□ -1.68
CTK3	YML112W	YJL045W	P47052	634 aa		4.55	□□□□□ -1.68
CTK3	YML112W	ESC8	Q08119	714 aa		4.55	□□□□□ -1.68
CTK3	YML112W	LPX1	Q12405	387 aa	Known RBP	4.55	□□□□□ -1.68
CTK3	YML112W	PTC5	Q12511	572 aa		4.55	□□□□□ -1.68
CTK3	YML112W	KIP1	P28742	1111 aa		4.54	□□□□□ -1.68
CTK3	YML112W	MDL2	P33311	773 aa		4.54	□□□□□ -1.68
CTK3	YML112W	FYV10	P40492	516 aa		4.54	□□□□□ -1.68
CTK3	YML112W	ROD1	Q02805	837 aa		4.54	□□□□□ -1.68
CTK3	YML112W	GCR1	P07261	785 aa		4.53	□□□□□ -1.68
CTK3	YML112W	ASF1	P32447	279 aa		4.53	□□□□□ -1.68
CTK3	YML112W	PEP7	P32609	515 aa		4.53	□□□□□ -1.68
CTK3	YML112W	YSC84	P32793	468 aa		4.53	□□□□□ -1.68
CTK3	YML112W	ALG3	P38179	458 aa		4.53	□□□□□ -1.68
CTK3	YML112W	SIW14	P53965	281 aa		4.53	□□□□□ -1.68
CTK3	YML112W	SRO9	P25567	434 aa	Known RBP	4.52	□□□□□ -1.69
CTK3	YML112W	RAT1	Q02792	1006 aa	Known RBP	4.52	□□□□□ -1.69
CTK3	YML112W	MRL1	Q06815	381 aa		4.52	□□□□□ -1.69
CTK3	YML112W	MKK2	P32491	506 aa		4.51	□□□□□ -1.69
CTK3	YML112W	GPB2	P39717	880 aa		4.51	□□□□□ -1.69
CTK3	YML112W	HXT13	P39924	564 aa		4.51	□□□□□ -1.69
CTK3	YML112W	NIT1	P40447	199 aa		4.51	□□□□□ -1.69
CTK3	YML112W	ENT3	P47160	408 aa		4.51	□□□□□ -1.69
CTK3	YML112W	GNP1	P48813	663 aa		4.51	□□□□□ -1.69
CTK3	YML112W	HXT17	P53631	564 aa		4.51	□□□□□ -1.69
CTK3	YML112W	HXT15	P54854	567 aa		4.51	□□□□□ -1.69
CTK3	YML112W	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	4.51	□□□□□ -1.69	RIP-Chip
CTK3	YML112W	HOS3	Q02959	697 aa	Known RBP	4.51	□□□□□ -1.69
CTK3	YML112W	OYE2	Q03558	400 aa	Known RBP	4.51	□□□□□ -1.69
CTK3	YML112W	GAS1	P22146	559 aa	Known RBP	4.5	□□□□□ -1.69
CTK3	YML112W	AIM26	P32858	118 aa		4.5	□□□□□ -1.69
CTK3	YML112W	FOL2	P51601	243 aa	Known RBP	4.5	□□□□□ -1.69
CTK3	YML112W	ESF1	Q06344	628 aa	Known RBP	4.5	□□□□□ -1.69
CTK3	YML112W	RSC58	Q07979	502 aa		4.5	□□□□□ -1.69
CTK3	YML112W	RCL1	Q08096	367 aa	Predicted RBP	4.5	□□□□□ -1.69
CTK3	YML112W	GIP4	P39732	760 aa		4.49	□□□□□ -1.69
CTK3	YML112W	PRP43	P53131	767 aa	Known RBP	4.49	□□□□□ -1.69

Retrieved 100 of 5,963 RNA–protein pairs in 11.8 ms