RNA–Protein interactions for RNA: YLL039C

UBI4, Transcript of Ubiquitin, yeast

Gene UBI4, Length 1,146 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBI4	YLL039C	NUP133	P36161	1157 aa		5.55	□□□□□ -1.52
UBI4	YLL039C	YFL034W	P43564	1073 aa		5.55	□□□□□ -1.52
UBI4	YLL039C	RGP1	P16664	663 aa		5.54	□□□□□ -1.52
UBI4	YLL039C	SMY1	P32364	656 aa	Known RBP	5.54	□□□□□ -1.52
UBI4	YLL039C	YER156C	P40093	338 aa	Known RBP	5.54	□□□□□ -1.52
UBI4	YLL039C	YGR122W	P53272	402 aa		5.54	□□□□□ -1.52
UBI4	YLL039C	ERO1	Q03103	563 aa		5.54	□□□□□ -1.52
UBI4	YLL039C	PKH1	Q03407	766 aa		5.54	□□□□□ -1.52
UBI4	YLL039C	SYF1	Q04048	859 aa	Predicted RBP	5.54	□□□□□ -1.52
UBI4	YLL039C	IRC3	Q06683	689 aa		5.54	□□□□□ -1.52
UBI4	YLL039C	PMD1	P32634	1753 aa		5.53	□□□□□ -1.52
UBI4	YLL039C	CAF20	P12962	161 aa	Known RBP	5.53	□□□□□ -1.52
UBI4	YLL039C	RAD24	P32641	659 aa		5.53	□□□□□ -1.52
UBI4	YLL039C	AMN1	P38285	549 aa	Predicted RBP	5.53	□□□□□ -1.52
UBI4	YLL039C	BIM1	P40013	344 aa		5.53	□□□□□ -1.52
UBI4	YLL039C	ATG32	P40458	529 aa		5.53	□□□□□ -1.52
UBI4	YLL039C	YIL092W	P40497	633 aa		5.53	□□□□□ -1.52
UBI4	YLL039C	UBP16	Q02863	499 aa		5.53	□□□□□ -1.52
UBI4	YLL039C	FCP1	Q03254	732 aa		5.53	□□□□□ -1.52
UBI4	YLL039C	NOP8	Q08287	484 aa	Predicted RBP	5.53	□□□□□ -1.52
UBI4	YLL039C	MCA1	Q08601	432 aa		5.53	□□□□□ -1.52
UBI4	YLL039C	TIF1	P10081	395 aa	Known RBP	5.52	□□□□□ -1.53
UBI4	YLL039C	DAL5	P15365	543 aa		5.52	□□□□□ -1.53
UBI4	YLL039C	SWC3	P31376	625 aa		5.52	□□□□□ -1.53
UBI4	YLL039C	MLF3	P32047	452 aa		5.52	□□□□□ -1.53
UBI4	YLL039C	PEP12	P32854	288 aa		5.52	□□□□□ -1.53
UBI4	YLL039C	ITC1	P53125	1264 aa		5.52	□□□□□ -1.53
UBI4	YLL039C	CSI1	Q04368	295 aa		5.52	□□□□□ -1.53
UBI4	YLL039C	TSC13	Q99190	310 aa		5.52	□□□□□ -1.53
UBI4	YLL039C	RAD2	P07276	1031 aa		5.51	□□□□□ -1.53
UBI4	YLL039C	RPS19A	P07280	144 aa	Known RBP	5.51	□□□□□ -1.53
UBI4	YLL039C	RPS19B	P07281	144 aa	Predicted RBP	5.51	□□□□□ -1.53
UBI4	YLL039C	FRD1	P32614	470 aa	Known RBP	5.51	□□□□□ -1.53
UBI4	YLL039C	UBP12	P39538	1254 aa		5.51	□□□□□ -1.53
UBI4	YLL039C	YTA6	P40328	754 aa		5.51	□□□□□ -1.53
UBI4	YLL039C	Q0182	Q9ZZW1	134 aa		5.51	□□□□□ -1.53
UBI4	YLL039C	SAC3	P46674	1301 aa		5.49	□□□□□ -1.53
UBI4	YLL039C	SUP35	P05453	685 aa	Known RBP	5.49	□□□□□ -1.53
UBI4	YLL039C	ICL1	P28240	557 aa	Predicted RBP	5.49	□□□□□ -1.53
UBI4	YLL039C	RTG2	P32608	588 aa	Known RBP	5.49	□□□□□ -1.53
UBI4	YLL039C	YKU70	P32807	602 aa		5.49	□□□□□ -1.53
UBI4	YLL039C	LSB6	P42951	607 aa		5.49	□□□□□ -1.53
UBI4	YLL039C	PRY1	P47032	299 aa		5.49	□□□□□ -1.53
UBI4	YLL039C	GRX6	Q12438	231 aa		5.49	□□□□□ -1.53
UBI4	YLL039C	RLF2	Q12495	606 aa		5.49	□□□□□ -1.53
UBI4	YLL039C	TOP1	P04786	769 aa		5.48	□□□□□ -1.53
UBI4	YLL039C	RPP1A	P05318	106 aa	Predicted RBP	5.48	□□□□□ -1.53
UBI4	YLL039C	RPS9B	P05755	195 aa	Known RBP	5.48	□□□□□ -1.53
UBI4	YLL039C	CYT1	P07143	309 aa		5.48	□□□□□ -1.53
UBI4	YLL039C	MNN4	P36044	1178 aa		5.48	□□□□□ -1.53
UBI4	YLL039C	TAT1	P38085	619 aa		5.48	□□□□□ -1.53
UBI4	YLL039C	SHC1	P39000	512 aa		5.48	□□□□□ -1.53
UBI4	YLL039C	FUN12	P39730	1002 aa	Known RBP	5.48	□□□□□ -1.53
UBI4	YLL039C	SQS1	P53866	767 aa	Known RBP	5.48	□□□□□ -1.53
UBI4	YLL039C	FAS2	P19097	1887 aa	Known RBP	5.47	□□□□□ -1.53
UBI4	YLL039C	RET1	P22276	1149 aa	Known RBP	5.47	□□□□□ -1.53
UBI4	YLL039C	KRE2	P27809	442 aa		5.47	□□□□□ -1.53
UBI4	YLL039C	YNG2	P38806	282 aa	Known RBP	5.47	□□□□□ -1.53
UBI4	YLL039C	GLT1	Q12680	2145 aa	Known RBP	5.47	□□□□□ -1.53
UBI4	YLL039C	MGM1	P32266	881 aa		5.46	□□□□□ -1.54
UBI4	YLL039C	NGR1	P32831	672 aa	Known RBP	5.46	□□□□□ -1.54
UBI4	YLL039C	PRK1	P40494	810 aa		5.46	□□□□□ -1.54
UBI4	YLL039C	ACS2	P52910	683 aa	Known RBP	5.46	□□□□□ -1.54
UBI4	YLL039C	THI3	Q07471	609 aa		5.46	□□□□□ -1.54
UBI4	YLL039C	SNU66	Q12420	587 aa	Predicted RBP	5.46	□□□□□ -1.54
UBI4	YLL039C	HKR1	P41809	1802 aa		5.46	□□□□□ -1.54
UBI4	YLL039C	GCD7	P32502	381 aa	Predicted RBP	5.45	□□□□□ -1.54
UBI4	YLL039C	SPL2	P38839	148 aa		5.45	□□□□□ -1.54
UBI4	YLL039C	POL32	P47110	350 aa		5.45	□□□□□ -1.54
UBI4	YLL039C	HGH1	P48362	394 aa	Known RBP	5.45	□□□□□ -1.54
UBI4	YLL039C	SKP1	P52286	194 aa		5.45	□□□□□ -1.54
UBI4	YLL039C	MTO1	P53070	669 aa		5.45	□□□□□ -1.54
UBI4	YLL039C	SPO1	P53541	631 aa		5.45	□□□□□ -1.54
UBI4	YLL039C	HEH2	Q03281	663 aa		5.45	□□□□□ -1.54
UBI4	YLL039C	PUF6	Q04373	656 aa	Known RBP	5.45	□□□□□ -1.54
UBI4	YLL039C	PGM2	P37012	569 aa	Known RBP	5.44	□□□□□ -1.54
UBI4	YLL039C	TPS3	P38426	1054 aa	Known RBP	5.44	□□□□□ -1.54
UBI4	YLL039C	RPT4	P53549	437 aa	Known RBP	5.44	□□□□□ -1.54
UBI4	YLL039C	YPL034W	Q03083	165 aa		5.44	□□□□□ -1.54
UBI4	YLL039C	UBX2	Q04228	584 aa		5.44	□□□□□ -1.54
UBI4	YLL039C	UTP4	Q06679	776 aa	Known RBP	5.44	□□□□□ -1.54
UBI4	YLL039C	ADR1	P07248	1323 aa		5.44	□□□□□ -1.54
UBI4	YLL039C	PHO87	P25360	923 aa		5.43	□□□□□ -1.54
UBI4	YLL039C	ALG14	P38242	237 aa		5.43	□□□□□ -1.54
UBI4	YLL039C	SSF1	P38789	453 aa	Predicted RBP	5.43	□□□□□ -1.54
UBI4	YLL039C	NUG1	P40010	520 aa	Known RBP	5.43	□□□□□ -1.54
UBI4	YLL039C	KTR7	P40504	517 aa		5.43	□□□□□ -1.54
UBI4	YLL039C	RPL34B	P40525	121 aa	Known RBP	5.43	□□□□□ -1.54
UBI4	YLL039C	TCB2	P48231	1178 aa		5.43	□□□□□ -1.54
UBI4	YLL039C	NHA1	Q99271	985 aa		5.43	□□□□□ -1.54
UBI4	YLL039C	SEC18	P18759	758 aa	Known RBP	5.42	□□□□□ -1.54
UBI4	YLL039C	MSM1	P22438	575 aa		5.42	□□□□□ -1.54
UBI4	YLL039C	LCB1	P25045	558 aa	Known RBP	5.42	□□□□□ -1.54
UBI4	YLL039C	HXT5	P38695	592 aa		5.42	□□□□□ -1.54
UBI4	YLL039C	BUD9	P53226	547 aa		5.42	□□□□□ -1.54
UBI4	YLL039C	CUS1	Q02554	436 aa	Predicted RBP	5.42	□□□□□ -1.54
UBI4	YLL039C	IRC4	Q03036	179 aa		5.42	□□□□□ -1.54
UBI4	YLL039C	GAS5	Q08193	484 aa		5.42	□□□□□ -1.54
UBI4	YLL039C	DUR1,2	P32528	1835 aa	Known RBP	5.41	□□□□□ -1.54
UBI4	YLL039C	NAR1	P23503	491 aa	Known RBP	5.41	□□□□□ -1.54

Retrieved 100 of 5,963 RNA–protein pairs in 10.3 ms