RNA–Protein interactions for RNA: ENST00000636964.1

CLN6-217, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2

Gene CLN6, Length 3,335 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-217ENST00000636964 IFT57Q9NWB7 429 aa14.66□□□□□ -0.06
CLN6-217ENST00000636964 KRT28Q7Z3Y7 464 aa14.66□□□□□ -0.06
CLN6-217ENST00000636964 FTSJ3Q8IY81 847 aaKnown RBP14.66□□□□□ -0.06
CLN6-217ENST00000636964 NAP1L5Q96NT1 182 aaPredicted RBP14.66□□□□□ -0.06
CLN6-217ENST00000636964 KDM2BQ8NHM5 1336 aa14.65□□□□□ -0.06
CLN6-217ENST00000636964 ZNF853P0CG23 659 aa14.65□□□□□ -0.06
CLN6-217ENST00000636964 CFAP44Q96MT7 982 aa14.65□□□□□ -0.06
CLN6-217ENST00000636964 MARF1Q9Y4F3 1742 aaKnown RBP14.65□□□□□ -0.06
CLN6-217ENST00000636964 IGHDP01880 384 aa14.65□□□□□ -0.06
CLN6-217ENST00000636964 NWD1Q149M9 1564 aa14.65□□□□□ -0.06
CLN6-217ENST00000636964 TRIM27P14373 513 aa14.64□□□□□ -0.07
CLN6-217ENST00000636964 C8orf58Q8NAV2 365 aa14.64□□□□□ -0.07
CLN6-217ENST00000636964 IGSF1Q8N6C5 1336 aa14.64□□□□□ -0.07
CLN6-217ENST00000636964 DZIP1LQ8IYY4 767 aaKnown RBP14.64□□□□□ -0.07
CLN6-217ENST00000636964 MIS18AQ9NYP9 233 aa14.64□□□□□ -0.07
CLN6-217ENST00000636964 ARHGEF10O15013 1369 aa14.64□□□□□ -0.07
CLN6-217ENST00000636964 VAMP4O75379 141 aa14.64□□□□□ -0.07
CLN6-217ENST00000636964 KRT24Q2M2I5 525 aa14.64□□□□□ -0.07
CLN6-217ENST00000636964 CENPQQ7L2Z9 268 aaPredicted RBP14.63□□□□□ -0.07
CLN6-217ENST00000636964 C1orf167Q5SNV9 1468 aa14.63□□□□□ -0.07
CLN6-217ENST00000636964 NFKBIBQ15653 356 aa14.63□□□□□ -0.07
CLN6-217ENST00000636964 GCP02774 474 aa14.63□□□□□ -0.07
CLN6-217ENST00000636964 RGPD1P0DJD0 1748 aa14.62□□□□□ -0.07
CLN6-217ENST00000636964 TWISTNBQ3B726 338 aaPredicted RBP14.62□□□□□ -0.07
CLN6-217ENST00000636964 ATF7IPQ6VMQ6 1270 aa14.62□□□□□ -0.07
CLN6-217ENST00000636964 STRCP1A6NGW2 1772 aa14.62□□□□□ -0.07
CLN6-217ENST00000636964 SLC4A3P48751 1232 aa14.61□□□□□ -0.07
CLN6-217ENST00000636964 IP6K1Q92551 441 aa14.61□□□□□ -0.07
CLN6-217ENST00000636964 SAMD1Q6SPF0 538 aaPredicted RBP14.61□□□□□ -0.07
CLN6-217ENST00000636964 ITPRIPQ8IWB1 547 aa14.61□□□□□ -0.07
CLN6-217ENST00000636964 RTF1Q92541 710 aaKnown RBP14.61□□□□□ -0.07
CLN6-217ENST00000636964 PCDHB15Q9Y5E8 787 aa14.61□□□□□ -0.07
CLN6-217ENST00000636964 MVPQ14764 893 aaKnown RBP14.61□□□□□ -0.07
CLN6-217ENST00000636964 KCNH5Q8NCM2 988 aa14.61□□□□□ -0.07
CLN6-217ENST00000636964 LRRC59Q96AG4 307 aaKnown RBP14.61□□□□□ -0.07
CLN6-217ENST00000636964 KDRP35968 1356 aa14.6□□□□□ -0.07
CLN6-217ENST00000636964 NBPF6Q5VWK0 638 aa14.6□□□□□ -0.07
CLN6-217ENST00000636964 NBPF4Q96M43 638 aa14.6□□□□□ -0.07
CLN6-217ENST00000636964 RGS3P49796 1198 aa14.6□□□□□ -0.07
CLN6-217ENST00000636964 ZC3H6P61129 1189 aaKnown RBP14.59□□□□□ -0.07
CLN6-217ENST00000636964 ALDH1L2Q3SY69 923 aa14.59□□□□□ -0.07
CLN6-217ENST00000636964 TMEM57Q8N5G2 664 aa14.59□□□□□ -0.07
CLN6-217ENST00000636964 LTN1O94822 1766 aa14.58□□□□□ -0.08
CLN6-217ENST00000636964 CHL1O00533 1208 aa14.58□□□□□ -0.08
CLN6-217ENST00000636964 MRPL50Q8N5N7 158 aaKnown RBP14.58□□□□□ -0.08
CLN6-217ENST00000636964 KIF24Q5T7B8 1368 aa14.58□□□□□ -0.08
CLN6-217ENST00000636964 IPO8O15397 1037 aaKnown RBP14.58□□□□□ -0.08
CLN6-217ENST00000636964 GAS2L2Q8NHY3 880 aa14.58□□□□□ -0.08
CLN6-217ENST00000636964 KIF16BQ96L93 1317 aa14.58□□□□□ -0.08
CLN6-217ENST00000636964 CABLES1Q8TDN4 633 aa14.57□□□□□ -0.08
CLN6-217ENST00000636964 MST1RQ04912 1400 aa14.57□□□□□ -0.08
CLN6-217ENST00000636964 NFAT5O94916 1531 aa14.57□□□□□ -0.08
CLN6-217ENST00000636964 CADPS2Q86UW7 1296 aa14.57□□□□□ -0.08
CLN6-217ENST00000636964 ARHGEF25Q86VW2 580 aa14.57□□□□□ -0.08
CLN6-217ENST00000636964 AXIN2Q9Y2T1 843 aa14.57□□□□□ -0.08
CLN6-217ENST00000636964 ZNF335Q9H4Z2 1342 aaPredicted RBP14.56□□□□□ -0.08
CLN6-217ENST00000636964 MS4A1P11836 297 aa14.56□□□□□ -0.08
CLN6-217ENST00000636964 LMTK3Q96Q04 1460 aa14.56□□□□□ -0.08
CLN6-217ENST00000636964 USP54Q70EL1 1684 aa14.56□□□□□ -0.08
CLN6-217ENST00000636964 TSPYL4Q9UJ04 414 aa14.56□□□□□ -0.08
CLN6-217ENST00000636964 RTL1A6NKG5 1358 aa14.55□□□□□ -0.08
CLN6-217ENST00000636964 GNAT3A8MTJ3 354 aa14.55□□□□□ -0.08
CLN6-217ENST00000636964 ZNF428Q96B54 188 aa14.55□□□□□ -0.08
CLN6-217ENST00000636964 CRB1P82279 1406 aa14.55□□□□□ -0.08
CLN6-217ENST00000636964 MSH6P52701 1360 aa14.54□□□□□ -0.08
CLN6-217ENST00000636964 IL17REQ8NFR9 667 aa14.54□□□□□ -0.08
CLN6-217ENST00000636964 DDX19BQ9UMR2 479 aa14.54□□□□□ -0.08
CLN6-217ENST00000636964 ANKRD24Q8TF21 1146 aa14.53□□□□□ -0.08
CLN6-217ENST00000636964 NAP1L2Q9ULW6 460 aaPredicted RBP14.53□□□□□ -0.08
CLN6-217ENST00000636964 USP19O94966 1318 aa14.52□□□□□ -0.09
CLN6-217ENST00000636964 TRPM3Q9HCF6 1732 aaPredicted RBP14.51□□□□□ -0.09
CLN6-217ENST00000636964 BRPF1P55201 1214 aaPredicted RBP14.51□□□□□ -0.09
CLN6-217ENST00000636964 RGPD2P0DJD1 1756 aa14.51□□□□□ -0.09
CLN6-217ENST00000636964 STRCQ7RTU9 1775 aa14.51□□□□□ -0.09
CLN6-217ENST00000636964 NPHP3Q7Z494 1330 aa14.51□□□□□ -0.09
CLN6-217ENST00000636964 NECTIN2Q92692 538 aa14.51□□□□□ -0.09
CLN6-217ENST00000636964 RWDD1Q9H446 243 aaPredicted RBP14.51□□□□□ -0.09
CLN6-217ENST00000636964 FRAT2O75474 233 aaPredicted RBP14.5□□□□□ -0.09
CLN6-217ENST00000636964 CHRNA2Q15822 529 aa14.5□□□□□ -0.09
CLN6-217ENST00000636964 LGR6Q9HBX8 967 aa14.5□□□□□ -0.09
CLN6-217ENST00000636964 KIF1AQ12756 1690 aa14.5□□□□□ -0.09
CLN6-217ENST00000636964 MAP3K5Q99683 1374 aa14.5□□□□□ -0.09
CLN6-217ENST00000636964 FAM43AQ8N2R8 423 aa14.5□□□□□ -0.09
CLN6-217ENST00000636964 BRINP3Q76B58 766 aa14.49□□□□□ -0.09
CLN6-217ENST00000636964 C1orf115Q9H7X2 142 aa14.49□□□□□ -0.09
CLN6-217ENST00000636964 ZBTB40Q9NUA8 1239 aa14.49□□□□□ -0.09
CLN6-217ENST00000636964 SLIT3O75094 1523 aa14.49□□□□□ -0.09
CLN6-217ENST00000636964 DCCP43146 1447 aa14.49□□□□□ -0.09
CLN6-217ENST00000636964 HTATSF1O43719 755 aaKnown RBP14.49□□□□□ -0.09
CLN6-217ENST00000636964 SLC4A2P04920 1241 aa14.49□□□□□ -0.09
CLN6-217ENST00000636964 ARHGAP45Q92619 1136 aa14.49□□□□□ -0.09
CLN6-217ENST00000636964 NCOA3Q9Y6Q9 1424 aa14.49□□□□□ -0.09
CLN6-217ENST00000636964 ZNF530Q6P9A1 599 aaPredicted RBP14.48□□□□□ -0.09
CLN6-217ENST00000636964 MPRIPQ6WCQ1 1025 aa14.48□□□□□ -0.09
CLN6-217ENST00000636964 CHMP4BQ9H444 224 aaKnown RBP14.48□□□□□ -0.09
CLN6-217ENST00000636964 PDZRN3Q9UPQ7 1066 aa14.48□□□□□ -0.09
CLN6-217ENST00000636964 TAF7Q15545 349 aaPredicted RBP14.47□□□□□ -0.09
CLN6-217ENST00000636964 MED1Q15648 1581 aaPredicted RBP14.47□□□□□ -0.09
CLN6-217ENST00000636964 KIAA0232Q92628 1395 aa14.47□□□□□ -0.09
CLN6-217ENST00000636964 NLRP2Q9NX02 1062 aa14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms