RNA–Protein interactions for RNA: ENST00000629912.1

NEK3-211, Transcript of NIMA related kinase 3, humanhuman

TSL 5 BASIC

Gene NEK3, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-211ENST00000629912 DCCP43146 1447 aa7.09□□□□□ -1.28
NEK3-211ENST00000629912 SOS1Q07889 1333 aaPredicted RBP7.08□□□□□ -1.28
NEK3-211ENST00000629912 SLIT3O75094 1523 aa7.08□□□□□ -1.28
NEK3-211ENST00000629912 TRPM3Q9HCF6 1732 aaPredicted RBP7.08□□□□□ -1.28
NEK3-211ENST00000629912 GNAT3A8MTJ3 354 aa7.08□□□□□ -1.28
NEK3-211ENST00000629912 FOXO3O43524 673 aa7.08□□□□□ -1.28
NEK3-211ENST00000629912 GCP02774 474 aa7.08□□□□□ -1.28
NEK3-211ENST00000629912 TMEM57Q8N5G2 664 aa7.08□□□□□ -1.28
NEK3-211ENST00000629912 API5Q9BZZ5 524 aaKnown RBP7.08□□□□□ -1.28
NEK3-211ENST00000629912 CACNA1FO60840 1977 aa7.08□□□□□ -1.28
NEK3-211ENST00000629912 USP19O94966 1318 aa7.07□□□□□ -1.28
NEK3-211ENST00000629912 ZBTB7BO15156 539 aaPredicted RBP7.07□□□□□ -1.28
NEK3-211ENST00000629912 ATF3P18847 181 aa7.07□□□□□ -1.28
NEK3-211ENST00000629912 FAM161AQ3B820 660 aa7.07□□□□□ -1.28
NEK3-211ENST00000629912 MCM10Q7L590 875 aa7.07□□□□□ -1.28
NEK3-211ENST00000629912 STRCP1A6NGW2 1772 aa7.07□□□□□ -1.28
NEK3-211ENST00000629912 ABCC4O15439 1325 aa7.06□□□□□ -1.28
NEK3-211ENST00000629912 ELL2O00472 640 aaPredicted RBP7.06□□□□□ -1.28
NEK3-211ENST00000629912 TAF7Q15545 349 aaPredicted RBP7.06□□□□□ -1.28
NEK3-211ENST00000629912 NBPF6Q5VWK0 638 aa7.06□□□□□ -1.28
NEK3-211ENST00000629912 INTS3Q68E01 1043 aaKnown RBP7.06□□□□□ -1.28
NEK3-211ENST00000629912 CADPS2Q86UW7 1296 aa7.06□□□□□ -1.28
NEK3-211ENST00000629912 ITPRIPQ8IWB1 547 aa7.06□□□□□ -1.28
NEK3-211ENST00000629912 SMC5Q8IY18 1101 aa7.06□□□□□ -1.28
NEK3-211ENST00000629912 IL17REQ8NFR9 667 aa7.06□□□□□ -1.28
NEK3-211ENST00000629912 NBPF4Q96M43 638 aa7.06□□□□□ -1.28
NEK3-211ENST00000629912 NCAPD2Q15021 1401 aa7.06□□□□□ -1.28
NEK3-211ENST00000629912 TMEM94Q12767 1356 aa7.06□□□□□ -1.28
NEK3-211ENST00000629912 PTPRCP08575 1304 aa7.05□□□□□ -1.28
NEK3-211ENST00000629912 KDM4FA0A1W2PPD8 638 aa7.05□□□□□ -1.28
NEK3-211ENST00000629912 ANP32AP39687 249 aaKnown RBP7.05□□□□□ -1.28
NEK3-211ENST00000629912 AMOTQ4VCS5 1084 aa7.05□□□□□ -1.28
NEK3-211ENST00000629912 SKAP1Q86WV1 359 aa7.05□□□□□ -1.28
NEK3-211ENST00000629912 IPO9Q96P70 1041 aaKnown RBP7.05□□□□□ -1.28
NEK3-211ENST00000629912 TSPYL4Q9UJ04 414 aa7.05□□□□□ -1.28
NEK3-211ENST00000629912 PDZRN3Q9UPQ7 1066 aa7.05□□□□□ -1.28
NEK3-211ENST00000629912 ALS2Q96Q42 1657 aa7.05□□□□□ -1.28
NEK3-211ENST00000629912 MAP3K5Q99683 1374 aa7.05□□□□□ -1.28
NEK3-211ENST00000629912 C8orf34Q49A92 452 aa7.04□□□□□ -1.28
NEK3-211ENST00000629912 PLEKHO1Q53GL0 409 aaPredicted RBP7.04□□□□□ -1.28
NEK3-211ENST00000629912 LTV1Q96GA3 475 aaPredicted RBP7.04□□□□□ -1.28
NEK3-211ENST00000629912 CHMP4AQ9BY43 222 aa7.04□□□□□ -1.28
NEK3-211ENST00000629912 LRRC37A3O60309 1634 aa7.04□□□□□ -1.28
NEK3-211ENST00000629912 MSH6P52701 1360 aa7.04□□□□□ -1.28
NEK3-211ENST00000629912 CEMIPQ8WUJ3 1361 aa7.04□□□□□ -1.28
NEK3-211ENST00000629912 RGPD2P0DJD1 1756 aa7.03□□□□□ -1.28
NEK3-211ENST00000629912 STRCQ7RTU9 1775 aa7.03□□□□□ -1.28
NEK3-211ENST00000629912 RGS3P49796 1198 aa7.03□□□□□ -1.28
NEK3-211ENST00000629912 HSPA2P54652 639 aa7.03□□□□□ -1.28
NEK3-211ENST00000629912 AKAP4Q5JQC9 854 aa7.03□□□□□ -1.28
NEK3-211ENST00000629912 ANKRD24Q8TF21 1146 aa7.03□□□□□ -1.28
NEK3-211ENST00000629912 GCC1Q96CN9 775 aa7.03□□□□□ -1.28
NEK3-211ENST00000629912 MIS18AQ9NYP9 233 aa7.03□□□□□ -1.28
NEK3-211ENST00000629912 XIRP1Q702N8 1843 aaKnown RBP7.03□□□□□ -1.28
NEK3-211ENST00000629912 NPHP3Q7Z494 1330 aa7.02□□□□□ -1.28
NEK3-211ENST00000629912 SLC4A2P04920 1241 aa7.02□□□□□ -1.29
NEK3-211ENST00000629912 HOXB7P09629 217 aa7.02□□□□□ -1.29
NEK3-211ENST00000629912 XPCQ01831 940 aaPredicted RBP7.02□□□□□ -1.29
NEK3-211ENST00000629912 NUCB1Q02818 461 aa7.02□□□□□ -1.29
NEK3-211ENST00000629912 KRT24Q2M2I5 525 aa7.02□□□□□ -1.29
NEK3-211ENST00000629912 CCDC30Q5VVM6 783 aa7.02□□□□□ -1.29
NEK3-211ENST00000629912 AXIN2Q9Y2T1 843 aa7.02□□□□□ -1.29
NEK3-211ENST00000629912 PLEKHG2Q9H7P9 1386 aa7.02□□□□□ -1.29
NEK3-211ENST00000629912 LMO7Q8WWI1 1683 aa7.02□□□□□ -1.29
NEK3-211ENST00000629912 CAMTA1Q9Y6Y1 1673 aa7.02□□□□□ -1.29
NEK3-211ENST00000629912 COL18A1P39060 1754 aa7.02□□□□□ -1.29
NEK3-211ENST00000629912 SPATA31A3Q5VYP0 1347 aa7.01□□□□□ -1.29
NEK3-211ENST00000629912 OVOS2A0A0G2JMS6 1433 aa7.01□□□□□ -1.29
NEK3-211ENST00000629912 VIRMAQ69YN4 1812 aaKnown RBP7.01□□□□□ -1.29
NEK3-211ENST00000629912 RGPD5Q99666 1765 aa7.01□□□□□ -1.29
NEK3-211ENST00000629912 MED1Q15648 1581 aaPredicted RBP7.01□□□□□ -1.29
NEK3-211ENST00000629912 LMTK3Q96Q04 1460 aa7.01□□□□□ -1.29
NEK3-211ENST00000629912 LMOD2Q6P5Q4 547 aa7.01□□□□□ -1.29
NEK3-211ENST00000629912 RPAP2Q8IXW5 612 aaPredicted RBP7.01□□□□□ -1.29
NEK3-211ENST00000629912 USHBP1Q8N6Y0 703 aa7.01□□□□□ -1.29
NEK3-211ENST00000629912 LRRC59Q96AG4 307 aaKnown RBP7.01□□□□□ -1.29
NEK3-211ENST00000629912 ANP32EQ9BTT0 268 aa7.01□□□□□ -1.29
NEK3-211ENST00000629912 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.01□□□□□ -1.297e-14■■■■■ 33.5
NEK3-211ENST00000629912 ZBTB47Q9UFB7 747 aaPredicted RBP7.01□□□□□ -1.29
NEK3-211ENST00000629912 ABCC6O95255 1503 aa7.01□□□□□ -1.29
NEK3-211ENST00000629912 RGS12O14924 1447 aa7.01□□□□□ -1.29
NEK3-211ENST00000629912 RNMTO43148 476 aaKnown RBP7□□□□□ -1.29
NEK3-211ENST00000629912 CCT4P50991 539 aaKnown RBP7□□□□□ -1.29
NEK3-211ENST00000629912 EIF4A1P60842 406 aaKnown RBP7□□□□□ -1.29
NEK3-211ENST00000629912 CHD1LQ86WJ1 897 aa7□□□□□ -1.29
NEK3-211ENST00000629912 SIRT2Q8IXJ6 389 aa7□□□□□ -1.29
NEK3-211ENST00000629912 DDRGK1Q96HY6 314 aa7□□□□□ -1.29
NEK3-211ENST00000629912 STK31Q9BXU1 1019 aa7□□□□□ -1.29
NEK3-211ENST00000629912 LGR6Q9HBX8 967 aa7□□□□□ -1.29
NEK3-211ENST00000629912 NOP58Q9Y2X3 529 aaKnown RBP7□□□□□ -1.29
NEK3-211ENST00000629912 PXDNQ92626 1479 aa6.99□□□□□ -1.29
NEK3-211ENST00000629912 CPDO75976 1380 aa6.99□□□□□ -1.29
NEK3-211ENST00000629912 ZBTB7CA1YPR0 619 aa6.99□□□□□ -1.29
NEK3-211ENST00000629912 ZC3H6P61129 1189 aaKnown RBP6.99□□□□□ -1.29
NEK3-211ENST00000629912 C1orf141Q5JVX7 400 aa6.99□□□□□ -1.29
NEK3-211ENST00000629912 ZNF530Q6P9A1 599 aaPredicted RBP6.99□□□□□ -1.29
NEK3-211ENST00000629912 BRINP3Q76B58 766 aa6.99□□□□□ -1.29
NEK3-211ENST00000629912 G2E3Q7L622 706 aa6.99□□□□□ -1.29
NEK3-211ENST00000629912 ANKRD44Q8N8A2 993 aa6.99□□□□□ -1.29
NEK3-211ENST00000629912 DCTPP1Q9H773 170 aa6.99□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms