RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 NLGN2Q8NFZ4 835 aa20.83■□□□□ 0.93
PNKP-218ENST00000625299 COL24A1Q17RW2 1714 aa20.83■□□□□ 0.92
PNKP-218ENST00000625299 MSH5O43196 834 aa20.82■□□□□ 0.92
PNKP-218ENST00000625299 ANKRD36BQ8N2N9 1353 aa20.82■□□□□ 0.92
PNKP-218ENST00000625299 LY75O60449 1722 aa20.81■□□□□ 0.92
PNKP-218ENST00000625299 RGPD2P0DJD1 1756 aa20.81■□□□□ 0.92
PNKP-218ENST00000625299 SHANK3Q9BYB0 1731 aa20.79■□□□□ 0.92
PNKP-218ENST00000625299 AMPHP49418 695 aa20.79■□□□□ 0.92
PNKP-218ENST00000625299 CCNL1Q9UK58 526 aaPredicted RBP20.79■□□□□ 0.92
PNKP-218ENST00000625299 NSD2O96028 1365 aa20.78■□□□□ 0.92
PNKP-218ENST00000625299 COG3Q96JB2 828 aa20.78■□□□□ 0.92
PNKP-218ENST00000625299 MAP3K19Q56UN5 1328 aa20.78■□□□□ 0.92
PNKP-218ENST00000625299 HOXC9P31274 260 aa20.77■□□□□ 0.92
PNKP-218ENST00000625299 ZCRB1Q8TBF4 217 aaKnown RBP20.77■□□□□ 0.92
PNKP-218ENST00000625299 MEGF6O75095 1541 aa20.77■□□□□ 0.92
PNKP-218ENST00000625299 FBLN1P23142 703 aa20.76■□□□□ 0.91
PNKP-218ENST00000625299 USP47Q96K76 1375 aa20.75■□□□□ 0.91
PNKP-218ENST00000625299 YBX3P16989 372 aaKnown RBP eCLIP20.75■□□□□ 0.91
PNKP-218ENST00000625299 MSL1Q68DK7 614 aa20.75■□□□□ 0.91
PNKP-218ENST00000625299 GRIN3BO60391 1043 aa20.73■□□□□ 0.91
PNKP-218ENST00000625299 COL23A1Q86Y22 540 aaPredicted RBP20.73■□□□□ 0.91
PNKP-218ENST00000625299 USHBP1Q8N6Y0 703 aa20.73■□□□□ 0.91
PNKP-218ENST00000625299 C5P01031 1676 aa20.7■□□□□ 0.91
PNKP-218ENST00000625299 PUS7Q96PZ0 661 aaKnown RBP20.7■□□□□ 0.9
PNKP-218ENST00000625299 TONSLQ96HA7 1378 aa20.7■□□□□ 0.9
PNKP-218ENST00000625299 RRS1Q15050 365 aaKnown RBP20.69■□□□□ 0.9
PNKP-218ENST00000625299 NBPF6Q5VWK0 638 aa20.68■□□□□ 0.9
PNKP-218ENST00000625299 RAPGEF4Q8WZA2 1011 aa20.68■□□□□ 0.9
PNKP-218ENST00000625299 NBPF4Q96M43 638 aa20.68■□□□□ 0.9
PNKP-218ENST00000625299 RTL1A6NKG5 1358 aa20.68■□□□□ 0.9
PNKP-218ENST00000625299 CEP350Q5VT06 3117 aa20.68■□□□□ 0.9
PNKP-218ENST00000625299 SMG6Q86US8 1419 aaKnown RBP20.68■□□□□ 0.9
PNKP-218ENST00000625299 ATP10DQ9P241 1426 aa20.68■□□□□ 0.9
PNKP-218ENST00000625299 TAF1LQ8IZX4 1826 aa20.65■□□□□ 0.9
PNKP-218ENST00000625299 ST20-MTHFSA0A0A6YYL1 179 aa20.65■□□□□ 0.9
PNKP-218ENST00000625299 TATP17735 454 aaPredicted RBP20.65■□□□□ 0.9
PNKP-218ENST00000625299 GGNBP2Q9H3C7 697 aa20.65■□□□□ 0.9
PNKP-218ENST00000625299 PALLDQ8WX93 1383 aa20.64■□□□□ 0.89
PNKP-218ENST00000625299 CGNL1Q0VF96 1302 aa20.64■□□□□ 0.89
PNKP-218ENST00000625299 MPRIPQ6WCQ1 1025 aa20.64■□□□□ 0.89
PNKP-218ENST00000625299 TESK2Q96S53 571 aa20.64■□□□□ 0.89
PNKP-218ENST00000625299 PCDH11XQ9BZA7 1347 aa20.63■□□□□ 0.89
PNKP-218ENST00000625299 PCDH11YQ9BZA8 1340 aa20.63■□□□□ 0.89
PNKP-218ENST00000625299 IFFO2Q5TF58 517 aa20.63■□□□□ 0.89
PNKP-218ENST00000625299 ZNF526Q8TF50 670 aaPredicted RBP20.63■□□□□ 0.89
PNKP-218ENST00000625299 WWC3Q9ULE0 1092 aa20.63■□□□□ 0.89
PNKP-218ENST00000625299 FLAD1Q8NFF5 587 aa20.62■□□□□ 0.89
PNKP-218ENST00000625299 GPBP1L1Q9HC44 474 aaPredicted RBP20.62■□□□□ 0.89
PNKP-218ENST00000625299 CD2APQ9Y5K6 639 aa20.62■□□□□ 0.89
PNKP-218ENST00000625299 AK7Q96M32 723 aa20.61■□□□□ 0.89
PNKP-218ENST00000625299 C4BP0C0L5 1744 aa20.61■□□□□ 0.89
PNKP-218ENST00000625299 PHF14O94880 888 aa20.6■□□□□ 0.89
PNKP-218ENST00000625299 HSP90AB2PQ58FF8 381 aa20.6■□□□□ 0.89
PNKP-218ENST00000625299 TOGARAM1Q9Y4F4 1720 aa20.6■□□□□ 0.89
PNKP-218ENST00000625299 FYB1O15117 783 aa20.59■□□□□ 0.89
PNKP-218ENST00000625299 ITGB4P16144 1822 aa20.59■□□□□ 0.89
PNKP-218ENST00000625299 KIF20BQ96Q89 1820 aa20.59■□□□□ 0.89
PNKP-218ENST00000625299 HMGB2P26583 209 aaKnown RBP20.57■□□□□ 0.88
PNKP-218ENST00000625299 SMIM5Q71RC9 77 aa20.57■□□□□ 0.88
PNKP-218ENST00000625299 INSRP06213 1382 aa20.57■□□□□ 0.88
PNKP-218ENST00000625299 CYP27B1O15528 508 aa20.56■□□□□ 0.88
PNKP-218ENST00000625299 SLC24A1O60721 1099 aa20.56■□□□□ 0.88
PNKP-218ENST00000625299 AMIGO3Q86WK7 504 aa20.56■□□□□ 0.88
PNKP-218ENST00000625299 FLT4P35916 1363 aa20.56■□□□□ 0.88
PNKP-218ENST00000625299 UBR3Q6ZT12 1888 aa20.56■□□□□ 0.88
PNKP-218ENST00000625299 IGSF1Q8N6C5 1336 aa20.55■□□□□ 0.88
PNKP-218ENST00000625299 SMARCC1Q92922 1105 aaPredicted RBP20.55■□□□□ 0.88
PNKP-218ENST00000625299 ADCY9O60503 1353 aa20.55■□□□□ 0.88
PNKP-218ENST00000625299 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.54■□□□□ 0.88
PNKP-218ENST00000625299 PKD1L3Q7Z443 1732 aa20.53■□□□□ 0.88
PNKP-218ENST00000625299 TMF1P82094 1093 aa20.53■□□□□ 0.88
PNKP-218ENST00000625299 HSPA6P17066 643 aa20.52■□□□□ 0.88
PNKP-218ENST00000625299 PIGBQ92521 554 aa20.52■□□□□ 0.88
PNKP-218ENST00000625299 NSD3Q9BZ95 1437 aa20.52■□□□□ 0.87
PNKP-218ENST00000625299 PPM1GO15355 546 aaPredicted RBP20.5■□□□□ 0.87
PNKP-218ENST00000625299 EMILIN1Q9Y6C2 1016 aa20.5■□□□□ 0.87
PNKP-218ENST00000625299 KIF24Q5T7B8 1368 aa20.49■□□□□ 0.87
PNKP-218ENST00000625299 LINC00116Q8NCU8 138 aa20.49■□□□□ 0.87
PNKP-218ENST00000625299 LOC102724428A0A0B4J2F2 783 aa20.48■□□□□ 0.87
PNKP-218ENST00000625299 SSFA2P28290 1259 aa20.48■□□□□ 0.87
PNKP-218ENST00000625299 SIK1P57059 783 aa20.48■□□□□ 0.87
PNKP-218ENST00000625299 MAP2P11137 1827 aaKnown RBP20.48■□□□□ 0.87
PNKP-218ENST00000625299 GNPATO15228 680 aa20.47■□□□□ 0.87
PNKP-218ENST00000625299 SPG7Q9UQ90 795 aa20.47■□□□□ 0.87
PNKP-218ENST00000625299 TMOD3Q9NYL9 352 aa20.46■□□□□ 0.87
PNKP-218ENST00000625299 ATP6V1AP38606 617 aa20.44■□□□□ 0.86
PNKP-218ENST00000625299 NKX1-1Q15270 411 aaPredicted RBP20.44■□□□□ 0.86
PNKP-218ENST00000625299 ASAP1Q9ULH1 1129 aa20.44■□□□□ 0.86
PNKP-218ENST00000625299 ITPK1Q13572 414 aa20.43■□□□□ 0.86
PNKP-218ENST00000625299 CDCA8Q53HL2 280 aa20.43■□□□□ 0.86
PNKP-218ENST00000625299 NCAPD2Q15021 1401 aa20.43■□□□□ 0.86
PNKP-218ENST00000625299 KIF3CO14782 793 aa20.42■□□□□ 0.86
PNKP-218ENST00000625299 MMP10P09238 476 aa20.42■□□□□ 0.86
PNKP-218ENST00000625299 CARD14Q9BXL6 1004 aa20.42■□□□□ 0.86
PNKP-218ENST00000625299 ANKRD26Q9UPS8 1709 aa20.41■□□□□ 0.86
PNKP-218ENST00000625299 N4BP2Q86UW6 1770 aaPredicted RBP20.41■□□□□ 0.86
PNKP-218ENST00000625299 CICQ96RK0 1608 aaPredicted RBP20.41■□□□□ 0.86
PNKP-218ENST00000625299 PXDNLA1KZ92 1463 aa20.4■□□□□ 0.86
PNKP-218ENST00000625299 EYA1Q99502 592 aa20.4■□□□□ 0.86
PNKP-218ENST00000625299 PHKG2P15735 406 aa20.39■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms