RNA–Protein interactions for RNA: ENST00000619438.4

SGMS1-210, Transcript of sphingomyelin synthase 1, humanhuman

TSL 5 BASIC

Gene SGMS1, Length 1,680 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGMS1-210ENST00000619438 FAM208AQ9UK61 1670 aaKnown RBP28.62■■■□□ 2.17
SGMS1-210ENST00000619438 USHBP1Q8N6Y0 703 aa28.61■■■□□ 2.17
SGMS1-210ENST00000619438 RGPD2P0DJD1 1756 aa28.61■■■□□ 2.17
SGMS1-210ENST00000619438 PEAK1Q9H792 1746 aa28.61■■■□□ 2.17
SGMS1-210ENST00000619438 CC2D1BQ5T0F9 858 aaKnown RBP28.61■■■□□ 2.17
SGMS1-210ENST00000619438 ERICH6BQ5W0A0 696 aa28.61■■■□□ 2.17
SGMS1-210ENST00000619438 OVOS2A0A0G2JMS6 1433 aa28.6■■■□□ 2.17
SGMS1-210ENST00000619438 SBF2Q86WG5 1849 aa28.58■■■□□ 2.17
SGMS1-210ENST00000619438 APBA3O96018 575 aa28.58■■■□□ 2.17
SGMS1-210ENST00000619438 EN1Q05925 392 aaPredicted RBP28.58■■■□□ 2.17
SGMS1-210ENST00000619438 RAPGEF4Q8WZA2 1011 aa28.58■■■□□ 2.16
SGMS1-210ENST00000619438 MAP2P11137 1827 aaKnown RBP28.57■■■□□ 2.16
SGMS1-210ENST00000619438 DDX54Q8TDD1 881 aaKnown RBP28.56■■■□□ 2.16
SGMS1-210ENST00000619438 ANKRD26Q9UPS8 1709 aa28.56■■■□□ 2.16
SGMS1-210ENST00000619438 NPC1L1Q9UHC9 1359 aa28.56■■■□□ 2.16
SGMS1-210ENST00000619438 SRCAPQ6ZRS2 3230 aa28.54■■■□□ 2.16
SGMS1-210ENST00000619438 TNS2Q63HR2 1409 aa28.54■■■□□ 2.16
SGMS1-210ENST00000619438 TATP17735 454 aaPredicted RBP28.53■■■□□ 2.16
SGMS1-210ENST00000619438 ZCRB1Q8TBF4 217 aaKnown RBP28.53■■■□□ 2.16
SGMS1-210ENST00000619438 EIF4A2Q14240 407 aaKnown RBP28.51■■■□□ 2.15
SGMS1-210ENST00000619438 EYA1Q99502 592 aa28.51■■■□□ 2.15
SGMS1-210ENST00000619438 EZH2Q15910 746 aaKnown RBP28.49■■■□□ 2.15
SGMS1-210ENST00000619438 BCL11BQ9C0K0 894 aaPredicted RBP28.49■■■□□ 2.15
SGMS1-210ENST00000619438 ACSBG1Q96GR2 724 aa28.48■■■□□ 2.15
SGMS1-210ENST00000619438 NUDCQ9Y266 331 aa28.48■■■□□ 2.15
SGMS1-210ENST00000619438 MTHFSP49914 203 aa28.47■■■□□ 2.15
SGMS1-210ENST00000619438 CAMKK2Q96RR4 588 aa28.47■■■□□ 2.15
SGMS1-210ENST00000619438 PTF1AQ7RTS3 328 aa28.45■■■□□ 2.15
SGMS1-210ENST00000619438 BCL9O00512 1426 aa28.45■■■□□ 2.14
SGMS1-210ENST00000619438 MEGF6O75095 1541 aa28.45■■■□□ 2.14
SGMS1-210ENST00000619438 KCNQ2O43526 872 aa28.43■■■□□ 2.14
SGMS1-210ENST00000619438 KAT6BQ8WYB5 2073 aa28.43■■■□□ 2.14
SGMS1-210ENST00000619438 RREB1Q92766 1687 aa28.42■■■□□ 2.14
SGMS1-210ENST00000619438 RNF123Q5XPI4 1314 aa28.4■■■□□ 2.14
SGMS1-210ENST00000619438 SPG7Q9UQ90 795 aa28.39■■■□□ 2.14
SGMS1-210ENST00000619438 PLSCR1O15162 318 aa28.38■■■□□ 2.13
SGMS1-210ENST00000619438 SYTL4Q96C24 671 aaPredicted RBP28.38■■■□□ 2.13
SGMS1-210ENST00000619438 SHANK3Q9BYB0 1731 aa28.38■■■□□ 2.13
SGMS1-210ENST00000619438 NUP188Q5SRE5 1749 aa28.38■■■□□ 2.13
SGMS1-210ENST00000619438 PCDH11XQ9BZA7 1347 aa28.38■■■□□ 2.13
SGMS1-210ENST00000619438 PCDH11YQ9BZA8 1340 aa28.38■■■□□ 2.13
SGMS1-210ENST00000619438 PSDA5PKW4 1024 aaPredicted RBP28.37■■■□□ 2.13
SGMS1-210ENST00000619438 NHSQ6T4R5 1651 aa28.37■■■□□ 2.13
SGMS1-210ENST00000619438 IGSF1Q8N6C5 1336 aa28.36■■■□□ 2.13
SGMS1-210ENST00000619438 RGPD3A6NKT7 1758 aaPredicted RBP28.36■■■□□ 2.13
SGMS1-210ENST00000619438 RGPD4Q7Z3J3 1758 aa28.36■■■□□ 2.13
SGMS1-210ENST00000619438 PPP2R1AP30153 589 aa28.35■■■□□ 2.13
SGMS1-210ENST00000619438 IL13P35225 146 aa28.35■■■□□ 2.13
SGMS1-210ENST00000619438 PRIM1P49642 420 aaKnown RBP28.34■■■□□ 2.13
SGMS1-210ENST00000619438 NCAPD2Q15021 1401 aa28.33■■■□□ 2.13
SGMS1-210ENST00000619438 DIAPH1O60610 1272 aaKnown RBP28.33■■■□□ 2.13
SGMS1-210ENST00000619438 SULT6B1Q6IMI4 303 aa28.33■■■□□ 2.13
SGMS1-210ENST00000619438 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP28.32■■■□□ 2.123e-7■■■■□ 23.1
SGMS1-210ENST00000619438 CYP27B1O15528 508 aa28.32■■■□□ 2.12
SGMS1-210ENST00000619438 PPP4R2Q9NY27 417 aa28.32■■■□□ 2.12
SGMS1-210ENST00000619438 R3HDM1Q15032 1099 aaKnown RBP28.31■■■□□ 2.12
SGMS1-210ENST00000619438 NBPF14Q5TI25 921 aa28.31■■■□□ 2.12
SGMS1-210ENST00000619438 BTAF1O14981 1849 aa28.3■■■□□ 2.12
SGMS1-210ENST00000619438 AEBP1Q8IUX7 1158 aa28.29■■■□□ 2.12
SGMS1-210ENST00000619438 PLEKHO1Q53GL0 409 aaPredicted RBP28.29■■■□□ 2.12
SGMS1-210ENST00000619438 CFAP53Q96M91 514 aa28.29■■■□□ 2.12
SGMS1-210ENST00000619438 TSHZ2Q9NRE2 1034 aa28.29■■■□□ 2.12
SGMS1-210ENST00000619438 DOT1LQ8TEK3 1739 aa28.28■■■□□ 2.12
SGMS1-210ENST00000619438 IFNL2Q8IZJ0 200 aa28.28■■■□□ 2.12
SGMS1-210ENST00000619438 IRX6P78412 446 aaPredicted RBP28.27■■■□□ 2.12
SGMS1-210ENST00000619438 TXNRD1Q16881 649 aa28.26■■■□□ 2.12
SGMS1-210ENST00000619438 AMOTQ4VCS5 1084 aa28.26■■■□□ 2.11
SGMS1-210ENST00000619438 PROM2Q8N271 834 aa28.26■■■□□ 2.11
SGMS1-210ENST00000619438 U2SURPO15042 1029 aaKnown RBP28.25■■■□□ 2.11
SGMS1-210ENST00000619438 HMOX1P09601 288 aa28.25■■■□□ 2.11
SGMS1-210ENST00000619438 PHKG2P15735 406 aa28.23■■■□□ 2.11
SGMS1-210ENST00000619438 MPRIPQ6WCQ1 1025 aa28.23■■■□□ 2.11
SGMS1-210ENST00000619438 PKD1L3Q7Z443 1732 aa28.23■■■□□ 2.11
SGMS1-210ENST00000619438 NKX1-1Q15270 411 aaPredicted RBP28.22■■■□□ 2.11
SGMS1-210ENST00000619438 ZNF530Q6P9A1 599 aaPredicted RBP28.2■■■□□ 2.11
SGMS1-210ENST00000619438 C1orf141Q5JVX7 400 aa28.19■■■□□ 2.1
SGMS1-210ENST00000619438 KDRP35968 1356 aa28.19■■■□□ 2.1
SGMS1-210ENST00000619438 PLEKHG2Q9H7P9 1386 aa28.19■■■□□ 2.1
SGMS1-210ENST00000619438 ADAMTS8Q9UP79 889 aa28.19■■■□□ 2.1
SGMS1-210ENST00000619438 HSP90AB1P08238 724 aaKnown RBP28.18■■■□□ 2.1
SGMS1-210ENST00000619438 WDR43Q15061 677 aaKnown RBP eCLIP28.17■■■□□ 2.1
SGMS1-210ENST00000619438 ANO8Q9HCE9 1232 aaPredicted RBP28.16■■■□□ 2.1
SGMS1-210ENST00000619438 LRP5O75197 1615 aa28.14■■■□□ 2.1
SGMS1-210ENST00000619438 DCAF5Q96JK2 942 aa28.14■■■□□ 2.1
SGMS1-210ENST00000619438 STK32BQ9NY57 414 aa28.14■■■□□ 2.1
SGMS1-210ENST00000619438 TMOD3Q9NYL9 352 aa28.14■■■□□ 2.1
SGMS1-210ENST00000619438 SLC27A3Q5K4L6 730 aa28.13■■■□□ 2.09
SGMS1-210ENST00000619438 PIGBQ92521 554 aa28.13■■■□□ 2.09
SGMS1-210ENST00000619438 TOGARAM1Q9Y4F4 1720 aa28.13■■■□□ 2.09
SGMS1-210ENST00000619438 ITGB4P16144 1822 aa28.12■■■□□ 2.09
SGMS1-210ENST00000619438 LRRC4BQ9NT99 713 aa28.11■■■□□ 2.09
SGMS1-210ENST00000619438 COL3A1P02461 1466 aaPredicted RBP28.11■■■□□ 2.09
SGMS1-210ENST00000619438 U2AF1L5P0DN76 240 aaPredicted RBP28.1■■■□□ 2.09
SGMS1-210ENST00000619438 U2AF1Q01081 240 aaKnown RBP eCLIP28.1■■■□□ 2.09
SGMS1-210ENST00000619438 LY75O60449 1722 aa28.1■■■□□ 2.09
SGMS1-210ENST00000619438 SENP3-EIF4A1A0A087X0R7 540 aa28.1■■■□□ 2.09
SGMS1-210ENST00000619438 KCNQ4P56696 695 aa28.1■■■□□ 2.09
SGMS1-210ENST00000619438 SMARCC1Q92922 1105 aaPredicted RBP28.1■■■□□ 2.09
SGMS1-210ENST00000619438 CCNL1Q9UK58 526 aaPredicted RBP28.1■■■□□ 2.09
SGMS1-210ENST00000619438 ERVV-2B6SEH9 535 aa28.09■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms