RNA–Protein interactions for RNA: ENST00000619438.4

SGMS1-210, Transcript of sphingomyelin synthase 1, humanhuman

TSL 5 BASIC

Gene SGMS1, Length 1,680 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGMS1-210ENST00000619438 FMR1Q06787 632 aaKnown RBP eCLIP26■■□□□ 1.752e-16■■■■■ 102.3
SGMS1-210ENST00000619438 ILF3Q12906 894 aaKnown RBP eCLIP20.86■□□□□ 0.933e-13■■■■■ 49.5
SGMS1-210ENST00000619438 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP17.67■□□□□ 0.428e-12■■■■■ 44.3
SGMS1-210ENST00000619438 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP22.79■■□□□ 1.241e-10■■■■■ 47.2
SGMS1-210ENST00000619438 CSTF2P33240 577 aaKnown RBP eCLIP20.54■□□□□ 0.881e-10■■■■■ 30.5
SGMS1-210ENST00000619438 NCBP2P52298 156 aaKnown RBP eCLIP19.99■□□□□ 0.792e-10■■■■□ 21.3
SGMS1-210ENST00000619438 QKIQ96PU8 341 aaKnown RBP eCLIP21.95■■□□□ 1.14e-10■■■■□ 20.2
SGMS1-210ENST00000619438 PCBP2Q15366 365 aaKnown RBP eCLIP20.92■□□□□ 0.943e-9■■■■■ 47.4
SGMS1-210ENST00000619438 EIF4G2P78344 907 aaKnown RBP eCLIP29.83■■■□□ 2.375e-9■■■□□ 17.2
SGMS1-210ENST00000619438 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP33.51■■■□□ 2.957e-9■■■□□ 17.9
SGMS1-210ENST00000619438 ZNF800Q2TB10 664 aaPredicted RBP eCLIP19.36■□□□□ 0.698e-9■■□□□ 13.4
SGMS1-210ENST00000619438 DDX3XO00571 662 aaKnown RBP eCLIP22.99■■□□□ 1.279e-9■■□□□ 14.4
SGMS1-210ENST00000619438 HNRNPLP14866 589 aaKnown RBP eCLIP21.72■■□□□ 1.071e-8■■■□□ 18.5
SGMS1-210ENST00000619438 TBRG4Q969Z0 631 aaKnown RBP eCLIP21.01■□□□□ 0.951e-8■■■■■ 58.8
SGMS1-210ENST00000619438 PTBP1P26599 531 aaKnown RBP eCLIP19.3■□□□□ 0.681e-8■■■■□ 24.3
SGMS1-210ENST00000619438 YBX3P16989 372 aaKnown RBP eCLIP27.27■■□□□ 1.962e-8■□□□□ 8.8
SGMS1-210ENST00000619438 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP23.73■■□□□ 1.394e-8■□□□□ 8.5
SGMS1-210ENST00000619438 ZNF622Q969S3 477 aaKnown RBP eCLIP27.08■■□□□ 1.928e-8■■■■□ 21.4
SGMS1-210ENST00000619438 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP22.55■■□□□ 1.21e-7■■■□□ 14.9
SGMS1-210ENST00000619438 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP31.98■■■□□ 2.711e-7■□□□□ 9.5
SGMS1-210ENST00000619438 FUSP35637 526 aaKnown RBP eCLIP14.01□□□□□ -0.172e-7■■□□□ 14.1
SGMS1-210ENST00000619438 KHSRPQ92945 711 aaKnown RBP eCLIP22.66■■□□□ 1.223e-7■■■□□ 15
SGMS1-210ENST00000619438 AQRO60306 1485 aaKnown RBP eCLIP36.6■■■■□ 3.453e-7■■■□□ 16
SGMS1-210ENST00000619438 BUD13Q9BRD0 619 aaKnown RBP eCLIP23.79■■□□□ 1.43e-7■□□□□ 10.7
SGMS1-210ENST00000619438 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP28.32■■■□□ 2.123e-7■■■■□ 23.1
SGMS1-210ENST00000619438 MATR3P43243 847 aaKnown RBP eCLIP23.04■■□□□ 1.285e-7■■■□□ 16.3
SGMS1-210ENST00000619438 NONOQ15233 471 aaKnown RBP eCLIP23.98■■□□□ 1.436e-7■■■□□ 17.6
SGMS1-210ENST00000619438 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP21.18■□□□□ 0.987e-7■■■■■ 59.7
SGMS1-210ENST00000619438 LIN28BQ6ZN17 250 aaKnown RBP eCLIP23.52■■□□□ 1.367e-7■■■□□ 17.8
SGMS1-210ENST00000619438 XRCC6P12956 609 aaKnown RBP eCLIP25.29■■□□□ 1.648e-7■■■■■ 41.4
SGMS1-210ENST00000619438 UTP3Q9NQZ2 479 aaKnown RBP eCLIP22.69■■□□□ 1.228e-7■■■■■ 89.9
SGMS1-210ENST00000619438 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP19.66■□□□□ 0.748e-7■■■■□ 20.6
SGMS1-210ENST00000619438 EWSR1Q01844 656 aaKnown RBP eCLIP17.77■□□□□ 0.438e-7■■■□□ 16.1
SGMS1-210ENST00000619438 AGGF1Q8N302 714 aaeCLIP21.87■■□□□ 1.099e-7■■□□□ 13.8
SGMS1-210ENST00000619438 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP21.27■■□□□ 19e-7■□□□□ 9.5
SGMS1-210ENST00000619438 RBM15Q96T37 977 aaKnown RBP eCLIP22.17■■□□□ 1.141e-6■■■■□ 19.3
SGMS1-210ENST00000619438 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP18.5■□□□□ 0.551e-6■■■■■ 27
SGMS1-210ENST00000619438 GPKOWQ92917 476 aaPredicted RBP eCLIP24.18■■□□□ 1.461e-6■□□□□ 9.3
SGMS1-210ENST00000619438 RBFOX2O43251 390 aaKnown RBP eCLIP17.55■□□□□ 0.41e-6■■■■□ 23.3
SGMS1-210ENST00000619438 TARDBPQ13148 414 aaKnown RBP eCLIP20.8■□□□□ 0.921e-6■■■■□ 26.2
SGMS1-210ENST00000619438 SF3B4Q15427 424 aaKnown RBP eCLIP19.08■□□□□ 0.652e-6■■□□□ 13.7
SGMS1-210ENST00000619438 HNRNPMP52272 730 aaKnown RBP eCLIP32.9■■■□□ 2.862e-6■■■■□ 21.2
SGMS1-210ENST00000619438 GRWD1Q9BQ67 446 aaKnown RBP eCLIP32.01■■■□□ 2.712e-6■■■□□ 15
SGMS1-210ENST00000619438 U2AF2P26368 475 aaKnown RBP eCLIP24.56■■□□□ 1.522e-6■■■■□ 21.4
SGMS1-210ENST00000619438 DDX6P26196 483 aaKnown RBP eCLIP22.29■■□□□ 1.164e-6■□□□□ 10.2
SGMS1-210ENST00000619438 PUM1Q14671 1186 aaKnown RBP eCLIP21.37■■□□□ 1.014e-6■■□□□ 12.3
SGMS1-210ENST00000619438 SF3B1O75533 1304 aaKnown RBP eCLIP22.88■■□□□ 1.254e-6■■■■■ 94.6
SGMS1-210ENST00000619438 WRNQ14191 1432 aaPredicted RBP eCLIP36.51■■■■□ 3.435e-6■■■■■ 29.2
SGMS1-210ENST00000619438 DDX24Q9GZR7 859 aaKnown RBP eCLIP25.45■■□□□ 1.675e-6■■■■□ 23.1
SGMS1-210ENST00000619438 TIA1P31483 386 aaKnown RBP eCLIP20.39■□□□□ 0.865e-6■□□□□ 8.4
SGMS1-210ENST00000619438 DHX30Q7L2E3 1194 aaKnown RBP eCLIP24.47■■□□□ 1.516e-6■■■□□ 14.6
SGMS1-210ENST00000619438 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP22.02■■□□□ 1.127e-6■■□□□ 13.7
Retrieved 52 of 52 RNA–protein pairs in 18.8 ms