RNA–Protein interactions for RNA: ENST00000602784.1

RNF40-212, Transcript of ring finger protein 40, humanhuman

TSL 3

Gene RNF40, Length 991 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-212ENST00000602784 NUDCQ9Y266 331 aa18.63■□□□□ 0.57
RNF40-212ENST00000602784 SULT6B1Q6IMI4 303 aa18.62■□□□□ 0.57
RNF40-212ENST00000602784 MARCH10Q8NA82 808 aaPredicted RBP18.62■□□□□ 0.57
RNF40-212ENST00000602784 BCL9O00512 1426 aa18.62■□□□□ 0.57
RNF40-212ENST00000602784 AEBP1Q8IUX7 1158 aa18.6■□□□□ 0.57
RNF40-212ENST00000602784 ANP32CO43423 234 aa18.59■□□□□ 0.57
RNF40-212ENST00000602784 FAM182BQ5T319 152 aa18.59■□□□□ 0.57
RNF40-212ENST00000602784 CCDC125Q86Z20 511 aa18.59■□□□□ 0.57
RNF40-212ENST00000602784 SPG7Q9UQ90 795 aa18.59■□□□□ 0.57
RNF40-212ENST00000602784 EP400Q96L91 3159 aa18.59■□□□□ 0.57
RNF40-212ENST00000602784 U2SURPO15042 1029 aaKnown RBP18.58■□□□□ 0.56
RNF40-212ENST00000602784 UPF1Q92900 1129 aaKnown RBP eCLIP18.58■□□□□ 0.562e-8■■■■□ 25.7
RNF40-212ENST00000602784 PKD1L3Q7Z443 1732 aa18.57■□□□□ 0.56
RNF40-212ENST00000602784 PCDH11XQ9BZA7 1347 aa18.57■□□□□ 0.56
RNF40-212ENST00000602784 PCDH11YQ9BZA8 1340 aa18.57■□□□□ 0.56
RNF40-212ENST00000602784 AMOTQ4VCS5 1084 aa18.57■□□□□ 0.56
RNF40-212ENST00000602784 DDX54Q8TDD1 881 aaKnown RBP18.57■□□□□ 0.56
RNF40-212ENST00000602784 HMOX1P09601 288 aa18.56■□□□□ 0.56
RNF40-212ENST00000602784 PLEKHO1Q53GL0 409 aaPredicted RBP18.56■□□□□ 0.56
RNF40-212ENST00000602784 SHANK3Q9BYB0 1731 aa18.55■□□□□ 0.56
RNF40-212ENST00000602784 FCHSD2O94868 740 aa18.55■□□□□ 0.56
RNF40-212ENST00000602784 U2AF1L5P0DN76 240 aaPredicted RBP18.55■□□□□ 0.56
RNF40-212ENST00000602784 U2AF1Q01081 240 aaKnown RBP eCLIP18.55■□□□□ 0.56
RNF40-212ENST00000602784 CYP27B1O15528 508 aa18.54■□□□□ 0.56
RNF40-212ENST00000602784 NKX1-1Q15270 411 aaPredicted RBP18.53■□□□□ 0.56
RNF40-212ENST00000602784 IFNL2Q8IZJ0 200 aa18.52■□□□□ 0.56
RNF40-212ENST00000602784 RSPH6AQ9H0K4 717 aa18.52■□□□□ 0.56
RNF40-212ENST00000602784 TRIM37O94972 964 aa18.51■□□□□ 0.55
RNF40-212ENST00000602784 PHKG2P15735 406 aa18.51■□□□□ 0.55
RNF40-212ENST00000602784 BCL11BQ9C0K0 894 aaPredicted RBP18.51■□□□□ 0.55
RNF40-212ENST00000602784 SF3B2Q13435 895 aaKnown RBP18.5■□□□□ 0.55
RNF40-212ENST00000602784 SBF2Q86WG5 1849 aa18.5■□□□□ 0.55
RNF40-212ENST00000602784 HSP90AB1P08238 724 aaKnown RBP18.49■□□□□ 0.55
RNF40-212ENST00000602784 PRKAR2BP31323 418 aa18.49■□□□□ 0.55
RNF40-212ENST00000602784 ZNF530Q6P9A1 599 aaPredicted RBP18.49■□□□□ 0.55
RNF40-212ENST00000602784 PNNQ9H307 717 aaKnown RBP18.49■□□□□ 0.55
RNF40-212ENST00000602784 C1orf141Q5JVX7 400 aa18.47■□□□□ 0.55
RNF40-212ENST00000602784 WDR43Q15061 677 aaKnown RBP eCLIP18.46■□□□□ 0.55
RNF40-212ENST00000602784 MTHFSDQ2M296 383 aaKnown RBP18.46■□□□□ 0.55
RNF40-212ENST00000602784 AKAP4Q5JQC9 854 aa18.46■□□□□ 0.55
RNF40-212ENST00000602784 GAS2L2Q8NHY3 880 aa18.46■□□□□ 0.55
RNF40-212ENST00000602784 DCAF5Q96JK2 942 aa18.46■□□□□ 0.55
RNF40-212ENST00000602784 PHACTR3Q96KR7 559 aa18.46■□□□□ 0.55
RNF40-212ENST00000602784 NHSQ6T4R5 1651 aa18.46■□□□□ 0.55
RNF40-212ENST00000602784 KCNQ2O43526 872 aa18.45■□□□□ 0.54
RNF40-212ENST00000602784 PRIM1P49642 420 aaKnown RBP18.45■□□□□ 0.54
RNF40-212ENST00000602784 ACSBG1Q96GR2 724 aa18.45■□□□□ 0.54
RNF40-212ENST00000602784 PLEKHF1Q96S99 279 aa18.45■□□□□ 0.54
RNF40-212ENST00000602784 TNS1Q9HBL0 1735 aaKnown RBP18.45■□□□□ 0.54
RNF40-212ENST00000602784 APBA3O96018 575 aa18.44■□□□□ 0.54
RNF40-212ENST00000602784 NEFMP07197 916 aa18.44■□□□□ 0.54
RNF40-212ENST00000602784 BAG6P46379 1132 aa18.44■□□□□ 0.54
RNF40-212ENST00000602784 ERVV-2B6SEH9 535 aa18.43■□□□□ 0.54
RNF40-212ENST00000602784 PLSCR1O15162 318 aa18.43■□□□□ 0.54
RNF40-212ENST00000602784 CCDC184Q52MB2 194 aa18.43■□□□□ 0.54
RNF40-212ENST00000602784 DIEXFQ68CQ4 756 aaKnown RBP18.43■□□□□ 0.54
RNF40-212ENST00000602784 PTF1AQ7RTS3 328 aa18.43■□□□□ 0.54
RNF40-212ENST00000602784 KAT6BQ8WYB5 2073 aa18.43■□□□□ 0.54
RNF40-212ENST00000602784 MRS2Q9HD23 443 aa18.42■□□□□ 0.54
RNF40-212ENST00000602784 ADAMTS8Q9UP79 889 aa18.42■□□□□ 0.54
RNF40-212ENST00000602784 DOT1LQ8TEK3 1739 aa18.42■□□□□ 0.54
RNF40-212ENST00000602784 SYTL4Q96C24 671 aaPredicted RBP18.41■□□□□ 0.54
RNF40-212ENST00000602784 KDM6AO15550 1401 aaPredicted RBP18.4■□□□□ 0.54
RNF40-212ENST00000602784 GNAT3A8MTJ3 354 aa18.4■□□□□ 0.54
RNF40-212ENST00000602784 PNISRQ8TF01 805 aaKnown RBP18.4■□□□□ 0.54
RNF40-212ENST00000602784 CAMKK2Q96RR4 588 aa18.4■□□□□ 0.54
RNF40-212ENST00000602784 MAP3K5Q99683 1374 aa18.4■□□□□ 0.54
RNF40-212ENST00000602784 TOGARAM1Q9Y4F4 1720 aa18.4■□□□□ 0.54
RNF40-212ENST00000602784 HTATSF1O43719 755 aaKnown RBP18.39■□□□□ 0.53
RNF40-212ENST00000602784 MPRIPQ6WCQ1 1025 aa18.39■□□□□ 0.53
RNF40-212ENST00000602784 DEFB132Q7Z7B7 95 aa18.39■□□□□ 0.53
RNF40-212ENST00000602784 MAPK8IP3Q9UPT6 1336 aa18.39■□□□□ 0.53
RNF40-212ENST00000602784 RGPD3A6NKT7 1758 aaPredicted RBP18.38■□□□□ 0.53
RNF40-212ENST00000602784 RGPD4Q7Z3J3 1758 aa18.38■□□□□ 0.53
RNF40-212ENST00000602784 BTAF1O14981 1849 aa18.38■□□□□ 0.53
RNF40-212ENST00000602784 RNMTO43148 476 aaKnown RBP18.38■□□□□ 0.53
RNF40-212ENST00000602784 EN1Q05925 392 aaPredicted RBP18.38■□□□□ 0.53
RNF40-212ENST00000602784 RUNDC1Q96C34 613 aa18.38■□□□□ 0.53
RNF40-212ENST00000602784 TMOD3Q9NYL9 352 aa18.38■□□□□ 0.53
RNF40-212ENST00000602784 ADAMTS7Q9UKP4 1686 aa18.38■□□□□ 0.53
RNF40-212ENST00000602784 ITGB4P16144 1822 aa18.37■□□□□ 0.53
RNF40-212ENST00000602784 NFE2L2Q16236 605 aa18.37■□□□□ 0.53
RNF40-212ENST00000602784 PIGBQ92521 554 aa18.37■□□□□ 0.53
RNF40-212ENST00000602784 LGR6Q9HBX8 967 aa18.37■□□□□ 0.53
RNF40-212ENST00000602784 SCN11AQ9UI33 1791 aa18.37■□□□□ 0.53
RNF40-212ENST00000602784 CCER2I3L3R5 266 aa18.36■□□□□ 0.53
RNF40-212ENST00000602784 CABP4P57796 275 aa18.36■□□□□ 0.53
RNF40-212ENST00000602784 IL17REQ8NFR9 667 aa18.35■□□□□ 0.53
RNF40-212ENST00000602784 SMARCC1Q92922 1105 aaPredicted RBP18.35■□□□□ 0.53
RNF40-212ENST00000602784 CEMIPQ8WUJ3 1361 aa18.34■□□□□ 0.53
RNF40-212ENST00000602784 EZH2Q15910 746 aaKnown RBP18.34■□□□□ 0.53
RNF40-212ENST00000602784 NFATC2IPQ8NCF5 419 aa18.34■□□□□ 0.53
RNF40-212ENST00000602784 RTF1Q92541 710 aaKnown RBP18.34■□□□□ 0.53
RNF40-212ENST00000602784 SLC52A2Q9HAB3 445 aa18.34■□□□□ 0.53
RNF40-212ENST00000602784 MRC1P22897 1456 aa18.33■□□□□ 0.53
RNF40-212ENST00000602784 PROM2Q8N271 834 aa18.33■□□□□ 0.52
RNF40-212ENST00000602784 TMPOP42166 694 aaKnown RBP18.32■□□□□ 0.52
RNF40-212ENST00000602784 TXNRD1Q16881 649 aa18.32■□□□□ 0.52
RNF40-212ENST00000602784 SLC27A3Q5K4L6 730 aa18.32■□□□□ 0.52
RNF40-212ENST00000602784 CCDC146Q8IYE0 955 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms