RNA–Protein interactions for RNA: ENST00000602011.5

SHKBP1-227, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 897 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-227ENST00000602011 RTL1A6NKG5 1358 aa24.9■■□□□ 1.58
SHKBP1-227ENST00000602011 FYB1O15117 783 aa24.89■■□□□ 1.58
SHKBP1-227ENST00000602011 AKT1S1Q96B36 256 aa24.89■■□□□ 1.58
SHKBP1-227ENST00000602011 SYTL4Q96C24 671 aaPredicted RBP24.87■■□□□ 1.57
SHKBP1-227ENST00000602011 PNPLA7Q6ZV29 1317 aa24.86■■□□□ 1.57
SHKBP1-227ENST00000602011 FAM208AQ9UK61 1670 aaKnown RBP24.85■■□□□ 1.57
SHKBP1-227ENST00000602011 CHD4Q14839 1912 aa24.85■■□□□ 1.57
SHKBP1-227ENST00000602011 KIF24Q5T7B8 1368 aa24.85■■□□□ 1.57
SHKBP1-227ENST00000602011 PRIM1P49642 420 aaKnown RBP24.85■■□□□ 1.57
SHKBP1-227ENST00000602011 USP47Q96K76 1375 aa24.84■■□□□ 1.57
SHKBP1-227ENST00000602011 TUBGCP6Q96RT7 1819 aa24.84■■□□□ 1.57
SHKBP1-227ENST00000602011 MAP3K5Q99683 1374 aa24.83■■□□□ 1.57
SHKBP1-227ENST00000602011 RGPD2P0DJD1 1756 aa24.83■■□□□ 1.57
SHKBP1-227ENST00000602011 GPR162Q16538 588 aa24.83■■□□□ 1.57
SHKBP1-227ENST00000602011 RAPGEF4Q8WZA2 1011 aa24.83■■□□□ 1.57
SHKBP1-227ENST00000602011 SMG6Q86US8 1419 aaKnown RBP24.83■■□□□ 1.57
SHKBP1-227ENST00000602011 PELP1Q8IZL8 1130 aaKnown RBP24.82■■□□□ 1.56
SHKBP1-227ENST00000602011 DOT1LQ8TEK3 1739 aa24.82■■□□□ 1.56
SHKBP1-227ENST00000602011 GGNBP2Q9H3C7 697 aa24.82■■□□□ 1.56
SHKBP1-227ENST00000602011 NSD2O96028 1365 aa24.81■■□□□ 1.56
SHKBP1-227ENST00000602011 TFCP2L1Q9NZI6 479 aa24.81■■□□□ 1.56
SHKBP1-227ENST00000602011 MEGF6O75095 1541 aa24.81■■□□□ 1.56
SHKBP1-227ENST00000602011 NBPF6Q5VWK0 638 aa24.8■■□□□ 1.56
SHKBP1-227ENST00000602011 NBPF4Q96M43 638 aa24.8■■□□□ 1.56
SHKBP1-227ENST00000602011 SHANK3Q9BYB0 1731 aa24.79■■□□□ 1.56
SHKBP1-227ENST00000602011 TATP17735 454 aaPredicted RBP24.79■■□□□ 1.56
SHKBP1-227ENST00000602011 POLD1P28340 1107 aa24.79■■□□□ 1.56
SHKBP1-227ENST00000602011 RRS1Q15050 365 aaKnown RBP24.79■■□□□ 1.56
SHKBP1-227ENST00000602011 NLGN2Q8NFZ4 835 aa24.79■■□□□ 1.56
SHKBP1-227ENST00000602011 INSRP06213 1382 aa24.79■■□□□ 1.56
SHKBP1-227ENST00000602011 USHBP1Q8N6Y0 703 aa24.78■■□□□ 1.56
SHKBP1-227ENST00000602011 QSER1Q2KHR3 1735 aa24.78■■□□□ 1.56
SHKBP1-227ENST00000602011 SENP3-EIF4A1A0A087X0R7 540 aa24.77■■□□□ 1.56
SHKBP1-227ENST00000602011 GOLGB1Q14789 3259 aaKnown RBP24.76■■□□□ 1.55
SHKBP1-227ENST00000602011 CLSPNQ9HAW4 1339 aa24.76■■□□□ 1.55
SHKBP1-227ENST00000602011 FLT4P35916 1363 aa24.76■■□□□ 1.55
SHKBP1-227ENST00000602011 C1QTNF8P60827 252 aa24.75■■□□□ 1.55
SHKBP1-227ENST00000602011 LY75O60449 1722 aa24.75■■□□□ 1.55
SHKBP1-227ENST00000602011 COL24A1Q17RW2 1714 aa24.75■■□□□ 1.55
SHKBP1-227ENST00000602011 HSP90AB2PQ58FF8 381 aa24.74■■□□□ 1.55
SHKBP1-227ENST00000602011 CCNL1Q9UK58 526 aaPredicted RBP24.74■■□□□ 1.55
SHKBP1-227ENST00000602011 MSH5O43196 834 aa24.73■■□□□ 1.55
SHKBP1-227ENST00000602011 PCDH11XQ9BZA7 1347 aa24.72■■□□□ 1.55
SHKBP1-227ENST00000602011 PCDH11YQ9BZA8 1340 aa24.72■■□□□ 1.55
SHKBP1-227ENST00000602011 MSL1Q68DK7 614 aa24.71■■□□□ 1.55
SHKBP1-227ENST00000602011 COL23A1Q86Y22 540 aaPredicted RBP24.71■■□□□ 1.55
SHKBP1-227ENST00000602011 FLAD1Q8NFF5 587 aa24.7■■□□□ 1.54
SHKBP1-227ENST00000602011 CARD14Q9BXL6 1004 aa24.69■■□□□ 1.54
SHKBP1-227ENST00000602011 YBX3P16989 372 aaKnown RBP eCLIP24.68■■□□□ 1.54
SHKBP1-227ENST00000602011 SMARCC1Q92922 1105 aaPredicted RBP24.68■■□□□ 1.54
SHKBP1-227ENST00000602011 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.66■■□□□ 1.54
SHKBP1-227ENST00000602011 WASHC2AQ641Q2 1341 aa24.65■■□□□ 1.54
SHKBP1-227ENST00000602011 SPG7Q9UQ90 795 aa24.65■■□□□ 1.54
SHKBP1-227ENST00000602011 NSD3Q9BZ95 1437 aa24.63■■□□□ 1.53
SHKBP1-227ENST00000602011 GIGYF1O75420 1035 aaPredicted RBP24.63■■□□□ 1.53
SHKBP1-227ENST00000602011 NKX1-1Q15270 411 aaPredicted RBP24.63■■□□□ 1.53
SHKBP1-227ENST00000602011 CYP27B1O15528 508 aa24.62■■□□□ 1.53
SHKBP1-227ENST00000602011 MPRIPQ6WCQ1 1025 aa24.61■■□□□ 1.53
SHKBP1-227ENST00000602011 SMIM5Q71RC9 77 aa24.61■■□□□ 1.53
SHKBP1-227ENST00000602011 EMILIN1Q9Y6C2 1016 aa24.61■■□□□ 1.53
SHKBP1-227ENST00000602011 C5P01031 1676 aa24.6■■□□□ 1.53
SHKBP1-227ENST00000602011 PPM1GO15355 546 aaPredicted RBP24.6■■□□□ 1.53
SHKBP1-227ENST00000602011 GRIN3BO60391 1043 aa24.59■■□□□ 1.53
SHKBP1-227ENST00000602011 PALLDQ8WX93 1383 aa24.58■■□□□ 1.53
SHKBP1-227ENST00000602011 PLEKHG2Q9H7P9 1386 aa24.58■■□□□ 1.53
SHKBP1-227ENST00000602011 AMIGO3Q86WK7 504 aa24.58■■□□□ 1.53
SHKBP1-227ENST00000602011 NCAPD2Q15021 1401 aa24.57■■□□□ 1.52
SHKBP1-227ENST00000602011 TOGARAM1Q9Y4F4 1720 aa24.56■■□□□ 1.52
SHKBP1-227ENST00000602011 IFNL2Q8IZJ0 200 aa24.55■■□□□ 1.52
SHKBP1-227ENST00000602011 EYA1Q99502 592 aa24.55■■□□□ 1.52
SHKBP1-227ENST00000602011 POLKQ9UBT6 870 aa24.55■■□□□ 1.52
SHKBP1-227ENST00000602011 WWC3Q9ULE0 1092 aa24.55■■□□□ 1.52
SHKBP1-227ENST00000602011 CD2APQ9Y5K6 639 aa24.55■■□□□ 1.52
SHKBP1-227ENST00000602011 TAF1LQ8IZX4 1826 aa24.55■■□□□ 1.52
SHKBP1-227ENST00000602011 KIF20BQ96Q89 1820 aa24.55■■□□□ 1.52
SHKBP1-227ENST00000602011 EIF4G2P78344 907 aaKnown RBP eCLIP24.53■■□□□ 1.52
SHKBP1-227ENST00000602011 PIGBQ92521 554 aa24.53■■□□□ 1.52
SHKBP1-227ENST00000602011 AK7Q96M32 723 aa24.53■■□□□ 1.52
SHKBP1-227ENST00000602011 ITGB4P16144 1822 aa24.52■■□□□ 1.52
SHKBP1-227ENST00000602011 PHF14O94880 888 aa24.52■■□□□ 1.52
SHKBP1-227ENST00000602011 PCGF6Q9BYE7 350 aa24.51■■□□□ 1.51
SHKBP1-227ENST00000602011 TMOD3Q9NYL9 352 aa24.51■■□□□ 1.51
SHKBP1-227ENST00000602011 C4BP0C0L5 1744 aa24.51■■□□□ 1.51
SHKBP1-227ENST00000602011 ATP10DQ9P241 1426 aa24.51■■□□□ 1.51
SHKBP1-227ENST00000602011 SSFA2P28290 1259 aa24.49■■□□□ 1.51
SHKBP1-227ENST00000602011 CEP350Q5VT06 3117 aa24.49■■□□□ 1.51
SHKBP1-227ENST00000602011 LOC102724428A0A0B4J2F2 783 aa24.48■■□□□ 1.51
SHKBP1-227ENST00000602011 HSP90AB1P08238 724 aaKnown RBP24.48■■□□□ 1.51
SHKBP1-227ENST00000602011 PHKG2P15735 406 aa24.48■■□□□ 1.51
SHKBP1-227ENST00000602011 SIK1P57059 783 aa24.48■■□□□ 1.51
SHKBP1-227ENST00000602011 PKD1L3Q7Z443 1732 aa24.47■■□□□ 1.51
SHKBP1-227ENST00000602011 ZNF526Q8TF50 670 aaPredicted RBP24.47■■□□□ 1.51
SHKBP1-227ENST00000602011 POLR3GLQ9BT43 218 aa24.47■■□□□ 1.51
SHKBP1-227ENST00000602011 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.46■■□□□ 1.51
SHKBP1-227ENST00000602011 EIF4A2Q14240 407 aaKnown RBP24.46■■□□□ 1.51
SHKBP1-227ENST00000602011 LINC00116Q8NCU8 138 aa24.46■■□□□ 1.51
SHKBP1-227ENST00000602011 UBR3Q6ZT12 1888 aa24.45■■□□□ 1.51
SHKBP1-227ENST00000602011 ERVV-2B6SEH9 535 aa24.45■■□□□ 1.5
SHKBP1-227ENST00000602011 AMOTQ4VCS5 1084 aa24.44■■□□□ 1.5
SHKBP1-227ENST00000602011 PANK3Q9H999 370 aa24.44■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms