RNA–Protein interactions for RNA: ENST00000600718.5

SHKBP1-224, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 1,993 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-224ENST00000600718 NLRP2Q9NX02 1062 aa22.83■■□□□ 1.25
SHKBP1-224ENST00000600718 ABCA3Q99758 1704 aa22.83■■□□□ 1.25
SHKBP1-224ENST00000600718 RARSP54136 660 aaKnown RBP22.83■■□□□ 1.24
SHKBP1-224ENST00000600718 LMO7Q8WWI1 1683 aa22.83■■□□□ 1.24
SHKBP1-224ENST00000600718 PLIN1O60240 522 aa22.81■■□□□ 1.24
SHKBP1-224ENST00000600718 BCAR3O75815 825 aa22.81■■□□□ 1.24
SHKBP1-224ENST00000600718 MBIPQ9NS73 344 aa22.81■■□□□ 1.24
SHKBP1-224ENST00000600718 PPP4R2Q9NY27 417 aa22.81■■□□□ 1.24
SHKBP1-224ENST00000600718 MAP3K5Q99683 1374 aa22.81■■□□□ 1.24
SHKBP1-224ENST00000600718 FAM208AQ9UK61 1670 aaKnown RBP22.8■■□□□ 1.24
SHKBP1-224ENST00000600718 CRB1P82279 1406 aa22.8■■□□□ 1.24
SHKBP1-224ENST00000600718 CHL1O00533 1208 aa22.8■■□□□ 1.24
SHKBP1-224ENST00000600718 UBAP1LF5GYI3 381 aa22.79■■□□□ 1.24
SHKBP1-224ENST00000600718 PIP4K2BP78356 416 aa22.79■■□□□ 1.24
SHKBP1-224ENST00000600718 RAPGEF4Q8WZA2 1011 aa22.78■■□□□ 1.24
SHKBP1-224ENST00000600718 ZNF428Q96B54 188 aa22.78■■□□□ 1.24
SHKBP1-224ENST00000600718 COL22A1Q8NFW1 1626 aaPredicted RBP22.78■■□□□ 1.24
SHKBP1-224ENST00000600718 PLEKHG2Q9H7P9 1386 aa22.77■■□□□ 1.24
SHKBP1-224ENST00000600718 AKAP4Q5JQC9 854 aa22.77■■□□□ 1.24
SHKBP1-224ENST00000600718 WDR17Q8IZU2 1322 aa22.77■■□□□ 1.24
SHKBP1-224ENST00000600718 PHLPP1O60346 1717 aa22.77■■□□□ 1.23
SHKBP1-224ENST00000600718 ZNF530Q6P9A1 599 aaPredicted RBP22.76■■□□□ 1.23
SHKBP1-224ENST00000600718 TATP17735 454 aaPredicted RBP22.76■■□□□ 1.23
SHKBP1-224ENST00000600718 IL17REQ8NFR9 667 aa22.76■■□□□ 1.23
SHKBP1-224ENST00000600718 COL16A1Q07092 1604 aaPredicted RBP22.75■■□□□ 1.23
SHKBP1-224ENST00000600718 COL5A2P05997 1499 aaPredicted RBP22.75■■□□□ 1.23
SHKBP1-224ENST00000600718 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.74■■□□□ 1.23
SHKBP1-224ENST00000600718 C1orf141Q5JVX7 400 aa22.74■■□□□ 1.23
SHKBP1-224ENST00000600718 BABAM1Q9NWV8 329 aa22.74■■□□□ 1.23
SHKBP1-224ENST00000600718 EVA1CP58658 441 aa22.73■■□□□ 1.23
SHKBP1-224ENST00000600718 ALDH1L2Q3SY69 923 aa22.73■■□□□ 1.23
SHKBP1-224ENST00000600718 VAMP4O75379 141 aa22.72■■□□□ 1.23
SHKBP1-224ENST00000600718 TOM1L2Q6ZVM7 507 aa22.72■■□□□ 1.23
SHKBP1-224ENST00000600718 EXOC6Q8TAG9 804 aa22.72■■□□□ 1.23
SHKBP1-224ENST00000600718 CERKQ8TCT0 537 aa22.72■■□□□ 1.23
SHKBP1-224ENST00000600718 SPG7Q9UQ90 795 aa22.72■■□□□ 1.23
SHKBP1-224ENST00000600718 CEMIPQ8WUJ3 1361 aa22.71■■□□□ 1.23
SHKBP1-224ENST00000600718 PDE3AQ14432 1141 aa22.71■■□□□ 1.23
SHKBP1-224ENST00000600718 TAF7Q15545 349 aaPredicted RBP22.71■■□□□ 1.23
SHKBP1-224ENST00000600718 C20orf194Q5TEA3 1177 aa22.71■■□□□ 1.23
SHKBP1-224ENST00000600718 CARD10Q9BWT7 1032 aa22.71■■□□□ 1.23
SHKBP1-224ENST00000600718 LRRC37A3O60309 1634 aa22.71■■□□□ 1.23
SHKBP1-224ENST00000600718 CANXP27824 592 aaKnown RBP22.7■■□□□ 1.23
SHKBP1-224ENST00000600718 TWISTNBQ3B726 338 aaPredicted RBP22.7■■□□□ 1.23
SHKBP1-224ENST00000600718 C8orf58Q8NAV2 365 aa22.7■■□□□ 1.23
SHKBP1-224ENST00000600718 SSH1Q8WYL5 1049 aa22.7■■□□□ 1.23
SHKBP1-224ENST00000600718 SMC4Q9NTJ3 1288 aa22.7■■□□□ 1.23
SHKBP1-224ENST00000600718 TSPYL4Q9UJ04 414 aa22.7■■□□□ 1.23
SHKBP1-224ENST00000600718 TSPYL6Q8N831 410 aa22.69■■□□□ 1.22
SHKBP1-224ENST00000600718 FRAT1Q92837 279 aaPredicted RBP22.69■■□□□ 1.22
SHKBP1-224ENST00000600718 CRBNQ96SW2 442 aa22.69■■□□□ 1.22
SHKBP1-224ENST00000600718 BCL2L13Q9BXK5 485 aa22.69■■□□□ 1.22
SHKBP1-224ENST00000600718 MEGF6O75095 1541 aa22.68■■□□□ 1.22
SHKBP1-224ENST00000600718 BRPF1P55201 1214 aaPredicted RBP22.68■■□□□ 1.22
SHKBP1-224ENST00000600718 LGR6Q9HBX8 967 aa22.68■■□□□ 1.22
SHKBP1-224ENST00000600718 STRN4Q9NRL3 753 aa22.68■■□□□ 1.22
SHKBP1-224ENST00000600718 COL14A1Q05707 1796 aaKnown RBP22.68■■□□□ 1.22
SHKBP1-224ENST00000600718 BTG4Q9NY30 223 aa22.67■■□□□ 1.22
SHKBP1-224ENST00000600718 MIS18AQ9NYP9 233 aa22.67■■□□□ 1.22
SHKBP1-224ENST00000600718 ELL2O00472 640 aaPredicted RBP22.67■■□□□ 1.22
SHKBP1-224ENST00000600718 RNMTO43148 476 aaKnown RBP22.67■■□□□ 1.22
SHKBP1-224ENST00000600718 OVOS2A0A0G2JMS6 1433 aa22.67■■□□□ 1.22
SHKBP1-224ENST00000600718 LARP1Q6PKG0 1096 aaKnown RBP22.66■■□□□ 1.22
SHKBP1-224ENST00000600718 MPRIPQ6WCQ1 1025 aa22.66■■□□□ 1.22
SHKBP1-224ENST00000600718 MS4A1P11836 297 aa22.65■■□□□ 1.22
SHKBP1-224ENST00000600718 ZKSCAN2Q63HK3 967 aa22.65■■□□□ 1.22
SHKBP1-224ENST00000600718 TEFQ10587 303 aa22.64■■□□□ 1.21
SHKBP1-224ENST00000600718 IFNL2Q8IZJ0 200 aa22.64■■□□□ 1.21
SHKBP1-224ENST00000600718 KIF16BQ96L93 1317 aa22.64■■□□□ 1.21
SHKBP1-224ENST00000600718 IPO8O15397 1037 aaKnown RBP22.63■■□□□ 1.21
SHKBP1-224ENST00000600718 PHKG2P15735 406 aa22.63■■□□□ 1.21
SHKBP1-224ENST00000600718 IL2RBP14784 551 aa22.62■■□□□ 1.21
SHKBP1-224ENST00000600718 B4GALNT3Q6L9W6 998 aa22.62■■□□□ 1.21
SHKBP1-224ENST00000600718 MRPL50Q8N5N7 158 aaKnown RBP22.62■■□□□ 1.21
SHKBP1-224ENST00000600718 CCDC136Q96JN2 1154 aa22.61■■□□□ 1.21
SHKBP1-224ENST00000600718 NOB1Q9ULX3 412 aaKnown RBP22.61■■□□□ 1.21
SHKBP1-224ENST00000600718 SOS1Q07889 1333 aaPredicted RBP22.61■■□□□ 1.21
SHKBP1-224ENST00000600718 HSP90AB1P08238 724 aaKnown RBP22.61■■□□□ 1.21
SHKBP1-224ENST00000600718 KRT24Q2M2I5 525 aa22.61■■□□□ 1.21
SHKBP1-224ENST00000600718 PKD1L3Q7Z443 1732 aa22.6■■□□□ 1.21
SHKBP1-224ENST00000600718 ZCRB1Q8TBF4 217 aaKnown RBP22.6■■□□□ 1.21
SHKBP1-224ENST00000600718 ADAMTS2O95450 1211 aa22.59■■□□□ 1.21
SHKBP1-224ENST00000600718 ATF7IPQ6VMQ6 1270 aa22.59■■□□□ 1.21
SHKBP1-224ENST00000600718 PANK1Q8TE04 598 aa22.59■■□□□ 1.21
SHKBP1-224ENST00000600718 ADAMTS7Q9UKP4 1686 aa22.59■■□□□ 1.21
SHKBP1-224ENST00000600718 PARP4Q9UKK3 1724 aaKnown RBP22.59■■□□□ 1.21
SHKBP1-224ENST00000600718 NUTM2BA6NNL0 878 aaPredicted RBP22.58■■□□□ 1.21
SHKBP1-224ENST00000600718 NUTM2EB1AL46 878 aaPredicted RBP22.58■■□□□ 1.21
SHKBP1-224ENST00000600718 CYP27B1O15528 508 aa22.58■■□□□ 1.21
SHKBP1-224ENST00000600718 NUTM2AQ8IVF1 878 aaPredicted RBP22.58■■□□□ 1.21
SHKBP1-224ENST00000600718 DZIP1LQ8IYY4 767 aaKnown RBP22.58■■□□□ 1.21
SHKBP1-224ENST00000600718 ARHGAP45Q92619 1136 aa22.58■■□□□ 1.21
SHKBP1-224ENST00000600718 JCADQ9P266 1359 aa22.58■■□□□ 1.21
SHKBP1-224ENST00000600718 BTBD11A6QL63 1104 aa22.58■■□□□ 1.2
SHKBP1-224ENST00000600718 DCAF5Q96JK2 942 aa22.58■■□□□ 1.2
SHKBP1-224ENST00000600718 TRIM27P14373 513 aa22.56■■□□□ 1.2
SHKBP1-224ENST00000600718 PCDH11XQ9BZA7 1347 aa22.56■■□□□ 1.2
SHKBP1-224ENST00000600718 PCDH11YQ9BZA8 1340 aa22.56■■□□□ 1.2
SHKBP1-224ENST00000600718 FTSJ3Q8IY81 847 aaKnown RBP22.56■■□□□ 1.2
SHKBP1-224ENST00000600718 COG6Q9Y2V7 657 aa22.56■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms