RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 KNSTRNQ9Y448 316 aa22.19■■□□□ 1.14
LSM4-206ENST00000600289 NLRP2Q9NX02 1062 aa22.18■■□□□ 1.14
LSM4-206ENST00000600289 OVOS2A0A0G2JMS6 1433 aa22.17■■□□□ 1.14
LSM4-206ENST00000600289 BCL9O00512 1426 aa22.17■■□□□ 1.14
LSM4-206ENST00000600289 PER1O15534 1290 aaPredicted RBP22.17■■□□□ 1.14
LSM4-206ENST00000600289 DDB1Q16531 1140 aa22.17■■□□□ 1.14
LSM4-206ENST00000600289 AMER1Q5JTC6 1135 aaPredicted RBP22.17■■□□□ 1.14
LSM4-206ENST00000600289 NPC1L1Q9UHC9 1359 aa22.16■■□□□ 1.14
LSM4-206ENST00000600289 PLSCR1O15162 318 aa22.16■■□□□ 1.14
LSM4-206ENST00000600289 GIGYF1O75420 1035 aaPredicted RBP22.16■■□□□ 1.14
LSM4-206ENST00000600289 NCAPD2Q15021 1401 aa22.15■■□□□ 1.14
LSM4-206ENST00000600289 ATF5Q9Y2D1 282 aaPredicted RBP22.15■■□□□ 1.14
LSM4-206ENST00000600289 EMILIN1Q9Y6C2 1016 aa22.15■■□□□ 1.14
LSM4-206ENST00000600289 HSP90AB2PQ58FF8 381 aa22.14■■□□□ 1.13
LSM4-206ENST00000600289 SGIP1Q9BQI5 828 aa22.14■■□□□ 1.13
LSM4-206ENST00000600289 POLKQ9UBT6 870 aa22.14■■□□□ 1.13
LSM4-206ENST00000600289 IL2RBP14784 551 aa22.13■■□□□ 1.13
LSM4-206ENST00000600289 NHSQ6T4R5 1651 aa22.12■■□□□ 1.13
LSM4-206ENST00000600289 PROM2Q8N271 834 aa22.12■■□□□ 1.13
LSM4-206ENST00000600289 LTV1Q96GA3 475 aaPredicted RBP22.12■■□□□ 1.13
LSM4-206ENST00000600289 PKD1L3Q7Z443 1732 aa22.11■■□□□ 1.13
LSM4-206ENST00000600289 PTF1AQ7RTS3 328 aa22.11■■□□□ 1.13
LSM4-206ENST00000600289 MORC1Q86VD1 984 aa22.1■■□□□ 1.13
LSM4-206ENST00000600289 MEGF6O75095 1541 aa22.1■■□□□ 1.13
LSM4-206ENST00000600289 EXOC5O00471 708 aa22.09■■□□□ 1.13
LSM4-206ENST00000600289 MAP3K5Q99683 1374 aa22.09■■□□□ 1.13
LSM4-206ENST00000600289 NBPF6Q5VWK0 638 aa22.08■■□□□ 1.13
LSM4-206ENST00000600289 MARCH10Q8NA82 808 aaPredicted RBP22.08■■□□□ 1.13
LSM4-206ENST00000600289 NBPF4Q96M43 638 aa22.08■■□□□ 1.13
LSM4-206ENST00000600289 ZEB1P37275 1124 aaPredicted RBP22.07■■□□□ 1.12
LSM4-206ENST00000600289 BCL11BQ9C0K0 894 aaPredicted RBP22.07■■□□□ 1.12
LSM4-206ENST00000600289 PAPPAQ13219 1627 aa22.06■■□□□ 1.12
LSM4-206ENST00000600289 PLEKHG2Q9H7P9 1386 aa22.05■■□□□ 1.12
LSM4-206ENST00000600289 TNNT2P45379 298 aaPredicted RBP22.05■■□□□ 1.12
LSM4-206ENST00000600289 MTFR1LQ9H019 292 aa22.05■■□□□ 1.12
LSM4-206ENST00000600289 COL24A1Q17RW2 1714 aa22.04■■□□□ 1.12
LSM4-206ENST00000600289 PPM1GO15355 546 aaPredicted RBP22.04■■□□□ 1.12
LSM4-206ENST00000600289 DOT1LQ8TEK3 1739 aa22.03■■□□□ 1.12
LSM4-206ENST00000600289 SLC15A2Q16348 729 aa22.02■■□□□ 1.12
LSM4-206ENST00000600289 BTAF1O14981 1849 aa22.01■■□□□ 1.11
LSM4-206ENST00000600289 EIF4A2Q14240 407 aaKnown RBP22■■□□□ 1.11
LSM4-206ENST00000600289 USHBP1Q8N6Y0 703 aa22■■□□□ 1.11
LSM4-206ENST00000600289 ARXQ96QS3 562 aa22■■□□□ 1.11
LSM4-206ENST00000600289 STK32BQ9NY57 414 aa22■■□□□ 1.11
LSM4-206ENST00000600289 RAPGEF4Q8WZA2 1011 aa21.99■■□□□ 1.11
LSM4-206ENST00000600289 CC2D1BQ5T0F9 858 aaKnown RBP21.98■■□□□ 1.11
LSM4-206ENST00000600289 EYA1Q99502 592 aa21.98■■□□□ 1.11
LSM4-206ENST00000600289 IGSF1Q8N6C5 1336 aa21.98■■□□□ 1.11
LSM4-206ENST00000600289 TATP17735 454 aaPredicted RBP21.97■■□□□ 1.11
LSM4-206ENST00000600289 TXNRD1Q16881 649 aa21.97■■□□□ 1.11
LSM4-206ENST00000600289 ZCRB1Q8TBF4 217 aaKnown RBP21.97■■□□□ 1.11
LSM4-206ENST00000600289 QSER1Q2KHR3 1735 aa21.97■■□□□ 1.11
LSM4-206ENST00000600289 GPR162Q16538 588 aa21.96■■□□□ 1.11
LSM4-206ENST00000600289 COL3A1P02461 1466 aaPredicted RBP21.96■■□□□ 1.11
LSM4-206ENST00000600289 TOGARAM1Q9Y4F4 1720 aa21.95■■□□□ 1.1
LSM4-206ENST00000600289 ITGB4P16144 1822 aa21.94■■□□□ 1.1
LSM4-206ENST00000600289 KDRP35968 1356 aa21.93■■□□□ 1.1
LSM4-206ENST00000600289 MTHFSP49914 203 aa21.93■■□□□ 1.1
LSM4-206ENST00000600289 PCDH11XQ9BZA7 1347 aa21.93■■□□□ 1.1
LSM4-206ENST00000600289 PCDH11YQ9BZA8 1340 aa21.93■■□□□ 1.1
LSM4-206ENST00000600289 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.93■■□□□ 1.1
LSM4-206ENST00000600289 TUBGCP6Q96RT7 1819 aa21.92■■□□□ 1.1
LSM4-206ENST00000600289 LY75O60449 1722 aa21.92■■□□□ 1.1
LSM4-206ENST00000600289 KAT6BQ8WYB5 2073 aa21.91■■□□□ 1.1
LSM4-206ENST00000600289 IL13P35225 146 aa21.91■■□□□ 1.1
LSM4-206ENST00000600289 DDX54Q8TDD1 881 aaKnown RBP21.91■■□□□ 1.1
LSM4-206ENST00000600289 HSPA6P17066 643 aa21.87■■□□□ 1.09
LSM4-206ENST00000600289 SPG7Q9UQ90 795 aa21.87■■□□□ 1.09
LSM4-206ENST00000600289 ATP10DQ9P241 1426 aa21.87■■□□□ 1.09
LSM4-206ENST00000600289 VIRMAQ69YN4 1812 aaKnown RBP21.87■■□□□ 1.09
LSM4-206ENST00000600289 CYP27B1O15528 508 aa21.86■■□□□ 1.09
LSM4-206ENST00000600289 NKX1-1Q15270 411 aaPredicted RBP21.85■■□□□ 1.09
LSM4-206ENST00000600289 ACSBG1Q96GR2 724 aa21.85■■□□□ 1.09
LSM4-206ENST00000600289 DIAPH1O60610 1272 aaKnown RBP21.84■■□□□ 1.09
LSM4-206ENST00000600289 PELP1Q8IZL8 1130 aaKnown RBP21.84■■□□□ 1.09
LSM4-206ENST00000600289 SCN11AQ9UI33 1791 aa21.83■■□□□ 1.09
LSM4-206ENST00000600289 PPP2R1AP30153 589 aa21.82■■□□□ 1.08
LSM4-206ENST00000600289 ZNF827Q17R98 1081 aa21.82■■□□□ 1.08
LSM4-206ENST00000600289 NLGN2Q8NFZ4 835 aa21.82■■□□□ 1.08
LSM4-206ENST00000600289 AMOTQ4VCS5 1084 aa21.81■■□□□ 1.08
LSM4-206ENST00000600289 SULT6B1Q6IMI4 303 aa21.81■■□□□ 1.08
LSM4-206ENST00000600289 AEBP1Q8IUX7 1158 aa21.81■■□□□ 1.08
LSM4-206ENST00000600289 ADAMTS7Q9UKP4 1686 aa21.8■■□□□ 1.08
LSM4-206ENST00000600289 PHKG2P15735 406 aa21.8■■□□□ 1.08
LSM4-206ENST00000600289 YBX3P16989 372 aaKnown RBP eCLIP21.8■■□□□ 1.081e-10■■■□□ 15.9
LSM4-206ENST00000600289 CNGB1Q14028 1251 aaPredicted RBP21.8■■□□□ 1.08
LSM4-206ENST00000600289 IFNL2Q8IZJ0 200 aa21.8■■□□□ 1.08
LSM4-206ENST00000600289 KLHL34Q8N239 644 aa21.8■■□□□ 1.08
LSM4-206ENST00000600289 PRIM1P49642 420 aaKnown RBP21.79■■□□□ 1.08
LSM4-206ENST00000600289 PLEKHO1Q53GL0 409 aaPredicted RBP21.79■■□□□ 1.08
LSM4-206ENST00000600289 CFAP53Q96M91 514 aa21.79■■□□□ 1.08
LSM4-206ENST00000600289 ADCY9O60503 1353 aa21.78■■□□□ 1.08
LSM4-206ENST00000600289 TAF1LQ8IZX4 1826 aa21.78■■□□□ 1.08
LSM4-206ENST00000600289 DDX10Q13206 875 aaKnown RBP21.77■■□□□ 1.08
LSM4-206ENST00000600289 C5P01031 1676 aa21.75■■□□□ 1.07
LSM4-206ENST00000600289 ZNF831Q5JPB2 1677 aa21.75■■□□□ 1.07
LSM4-206ENST00000600289 SYTL4Q96C24 671 aaPredicted RBP21.75■■□□□ 1.07
LSM4-206ENST00000600289 HSP90AB1P08238 724 aaKnown RBP21.74■■□□□ 1.07
LSM4-206ENST00000600289 RALBP1Q15311 655 aa21.74■■□□□ 1.07
LSM4-206ENST00000600289 KDM6AO15550 1401 aaPredicted RBP21.73■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms