RNA–Protein interactions for RNA: ENST00000599454.5

PNKP-212, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 529 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-212ENST00000599454 AKT1S1Q96B36 256 aa29.68■■■□□ 2.34
PNKP-212ENST00000599454 TMF1P82094 1093 aa29.67■■■□□ 2.34
PNKP-212ENST00000599454 ZCRB1Q8TBF4 217 aaKnown RBP29.67■■■□□ 2.34
PNKP-212ENST00000599454 MEGF6O75095 1541 aa29.66■■■□□ 2.34
PNKP-212ENST00000599454 CGNL1Q0VF96 1302 aa29.65■■■□□ 2.34
PNKP-212ENST00000599454 FBLN1P23142 703 aa29.64■■■□□ 2.34
PNKP-212ENST00000599454 PRIM1P49642 420 aaKnown RBP29.64■■■□□ 2.34
PNKP-212ENST00000599454 SYTL4Q96C24 671 aaPredicted RBP29.64■■■□□ 2.34
PNKP-212ENST00000599454 USP47Q96K76 1375 aa29.64■■■□□ 2.33
PNKP-212ENST00000599454 SMG6Q86US8 1419 aaKnown RBP29.63■■■□□ 2.33
PNKP-212ENST00000599454 FYB1O15117 783 aa29.63■■■□□ 2.33
PNKP-212ENST00000599454 NSD2O96028 1365 aa29.62■■■□□ 2.33
PNKP-212ENST00000599454 CDCA8Q53HL2 280 aa29.61■■■□□ 2.33
PNKP-212ENST00000599454 RRS1Q15050 365 aaKnown RBP29.6■■■□□ 2.33
PNKP-212ENST00000599454 POLD1P28340 1107 aa29.59■■■□□ 2.33
PNKP-212ENST00000599454 GGNBP2Q9H3C7 697 aa29.59■■■□□ 2.33
PNKP-212ENST00000599454 PNPLA7Q6ZV29 1317 aa29.59■■■□□ 2.33
PNKP-212ENST00000599454 KIF24Q5T7B8 1368 aa29.58■■■□□ 2.33
PNKP-212ENST00000599454 NBPF6Q5VWK0 638 aa29.58■■■□□ 2.33
PNKP-212ENST00000599454 NBPF4Q96M43 638 aa29.58■■■□□ 2.33
PNKP-212ENST00000599454 TFCP2L1Q9NZI6 479 aa29.58■■■□□ 2.33
PNKP-212ENST00000599454 RAPGEF4Q8WZA2 1011 aa29.57■■■□□ 2.32
PNKP-212ENST00000599454 INSRP06213 1382 aa29.56■■■□□ 2.32
PNKP-212ENST00000599454 ZNF784Q8NCA9 323 aaPredicted RBP29.55■■■□□ 2.32
PNKP-212ENST00000599454 FLT4P35916 1363 aa29.54■■■□□ 2.32
PNKP-212ENST00000599454 CCNL1Q9UK58 526 aaPredicted RBP29.54■■■□□ 2.32
PNKP-212ENST00000599454 TATP17735 454 aaPredicted RBP29.53■■■□□ 2.32
PNKP-212ENST00000599454 HMGB2P26583 209 aaKnown RBP29.53■■■□□ 2.32
PNKP-212ENST00000599454 KCNQ4P56696 695 aa29.52■■■□□ 2.32
PNKP-212ENST00000599454 C5P01031 1676 aa29.52■■■□□ 2.32
PNKP-212ENST00000599454 TAF1LQ8IZX4 1826 aa29.51■■■□□ 2.31
PNKP-212ENST00000599454 USHBP1Q8N6Y0 703 aa29.51■■■□□ 2.31
PNKP-212ENST00000599454 PCDH11XQ9BZA7 1347 aa29.5■■■□□ 2.31
PNKP-212ENST00000599454 PCDH11YQ9BZA8 1340 aa29.5■■■□□ 2.31
PNKP-212ENST00000599454 HSP90AB2PQ58FF8 381 aa29.5■■■□□ 2.31
PNKP-212ENST00000599454 ITGB4P16144 1822 aa29.5■■■□□ 2.31
PNKP-212ENST00000599454 PKD1L3Q7Z443 1732 aa29.48■■■□□ 2.31
PNKP-212ENST00000599454 TRIM26Q12899 539 aaPredicted RBP29.48■■■□□ 2.31
PNKP-212ENST00000599454 GPR162Q16538 588 aa29.48■■■□□ 2.31
PNKP-212ENST00000599454 KLHL34Q8N239 644 aa29.47■■■□□ 2.31
PNKP-212ENST00000599454 ANKRD26Q9UPS8 1709 aa29.47■■■□□ 2.31
PNKP-212ENST00000599454 MAP2P11137 1827 aaKnown RBP29.46■■■□□ 2.31
PNKP-212ENST00000599454 UTRNP46939 3433 aa29.45■■■□□ 2.31
PNKP-212ENST00000599454 TOGARAM1Q9Y4F4 1720 aa29.43■■■□□ 2.3
PNKP-212ENST00000599454 NSD3Q9BZ95 1437 aa29.43■■■□□ 2.3
PNKP-212ENST00000599454 COL23A1Q86Y22 540 aaPredicted RBP29.42■■■□□ 2.3
PNKP-212ENST00000599454 CARD14Q9BXL6 1004 aa29.42■■■□□ 2.3
PNKP-212ENST00000599454 MSH5O43196 834 aa29.41■■■□□ 2.3
PNKP-212ENST00000599454 NCAPD2Q15021 1401 aa29.41■■■□□ 2.3
PNKP-212ENST00000599454 TIMELESSQ9UNS1 1208 aa29.41■■■□□ 2.3
PNKP-212ENST00000599454 PALLDQ8WX93 1383 aa29.4■■■□□ 2.3
PNKP-212ENST00000599454 FLAD1Q8NFF5 587 aa29.4■■■□□ 2.3
PNKP-212ENST00000599454 CYP27B1O15528 508 aa29.39■■■□□ 2.3
PNKP-212ENST00000599454 SMARCC1Q92922 1105 aaPredicted RBP29.38■■■□□ 2.29
PNKP-212ENST00000599454 EMILIN1Q9Y6C2 1016 aa29.38■■■□□ 2.29
PNKP-212ENST00000599454 MPRIPQ6WCQ1 1025 aa29.37■■■□□ 2.29
PNKP-212ENST00000599454 C4BP0C0L5 1744 aa29.37■■■□□ 2.29
PNKP-212ENST00000599454 NLGN2Q8NFZ4 835 aa29.36■■■□□ 2.29
PNKP-212ENST00000599454 PELP1Q8IZL8 1130 aaKnown RBP29.35■■■□□ 2.29
PNKP-212ENST00000599454 UBR3Q6ZT12 1888 aa29.35■■■□□ 2.29
PNKP-212ENST00000599454 NKX1-1Q15270 411 aaPredicted RBP29.33■■■□□ 2.29
PNKP-212ENST00000599454 SPG7Q9UQ90 795 aa29.33■■■□□ 2.29
PNKP-212ENST00000599454 WASHC2AQ641Q2 1341 aa29.33■■■□□ 2.29
PNKP-212ENST00000599454 GRIN3BO60391 1043 aa29.32■■■□□ 2.28
PNKP-212ENST00000599454 PPM1GO15355 546 aaPredicted RBP29.31■■■□□ 2.28
PNKP-212ENST00000599454 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP29.31■■■□□ 2.28
PNKP-212ENST00000599454 MSL1Q68DK7 614 aa29.3■■■□□ 2.28
PNKP-212ENST00000599454 C1QTNF8P60827 252 aa29.29■■■□□ 2.28
PNKP-212ENST00000599454 CLSPNQ9HAW4 1339 aa29.28■■■□□ 2.28
PNKP-212ENST00000599454 AK7Q96M32 723 aa29.28■■■□□ 2.28
PNKP-212ENST00000599454 CD2APQ9Y5K6 639 aa29.28■■■□□ 2.28
PNKP-212ENST00000599454 PIGBQ92521 554 aa29.27■■■□□ 2.28
PNKP-212ENST00000599454 PLEKHG2Q9H7P9 1386 aa29.26■■■□□ 2.28
PNKP-212ENST00000599454 EYA1Q99502 592 aa29.26■■■□□ 2.27
PNKP-212ENST00000599454 YBX3P16989 372 aaKnown RBP eCLIP29.25■■■□□ 2.27
PNKP-212ENST00000599454 POLKQ9UBT6 870 aa29.24■■■□□ 2.27
PNKP-212ENST00000599454 IFNL2Q8IZJ0 200 aa29.22■■■□□ 2.27
PNKP-212ENST00000599454 TMOD3Q9NYL9 352 aa29.22■■■□□ 2.27
PNKP-212ENST00000599454 LOC102724428A0A0B4J2F2 783 aa29.21■■■□□ 2.27
PNKP-212ENST00000599454 GIGYF1O75420 1035 aaPredicted RBP29.21■■■□□ 2.27
PNKP-212ENST00000599454 SIK1P57059 783 aa29.21■■■□□ 2.27
PNKP-212ENST00000599454 SENP3-EIF4A1A0A087X0R7 540 aa29.2■■■□□ 2.26
PNKP-212ENST00000599454 SSFA2P28290 1259 aa29.2■■■□□ 2.26
PNKP-212ENST00000599454 GOLGB1Q14789 3259 aaKnown RBP29.19■■■□□ 2.26
PNKP-212ENST00000599454 PHKG2P15735 406 aa29.19■■■□□ 2.26
PNKP-212ENST00000599454 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP29.18■■■□□ 2.26
PNKP-212ENST00000599454 ZNF831Q5JPB2 1677 aa29.17■■■□□ 2.26
PNKP-212ENST00000599454 PHF14O94880 888 aa29.16■■■□□ 2.26
PNKP-212ENST00000599454 EIF4A2Q14240 407 aaKnown RBP29.16■■■□□ 2.26
PNKP-212ENST00000599454 AMIGO3Q86WK7 504 aa29.16■■■□□ 2.26
PNKP-212ENST00000599454 LINC00116Q8NCU8 138 aa29.15■■■□□ 2.26
PNKP-212ENST00000599454 POLR3GLQ9BT43 218 aa29.15■■■□□ 2.26
PNKP-212ENST00000599454 ASAP1Q9ULH1 1129 aa29.15■■■□□ 2.26
PNKP-212ENST00000599454 ATP6V1AP38606 617 aa29.13■■■□□ 2.25
PNKP-212ENST00000599454 IGSF1Q8N6C5 1336 aa29.12■■■□□ 2.25
PNKP-212ENST00000599454 TNNT2P45379 298 aaPredicted RBP29.11■■■□□ 2.25
PNKP-212ENST00000599454 ITPK1Q13572 414 aa29.11■■■□□ 2.25
PNKP-212ENST00000599454 ATG3Q9NT62 314 aa29.11■■■□□ 2.25
PNKP-212ENST00000599454 GNPATO15228 680 aa29.1■■■□□ 2.25
PNKP-212ENST00000599454 HSP90AB1P08238 724 aaKnown RBP29.1■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms