RNA–Protein interactions for RNA: ENST00000592911.5

SMAD4-215, Transcript of SMAD family member 4, humanhuman

TSL 5

Gene SMAD4, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-215ENST00000592911 GPR162Q16538 588 aa12.51□□□□□ -0.41
SMAD4-215ENST00000592911 CEP350Q5VT06 3117 aa12.51□□□□□ -0.41
SMAD4-215ENST00000592911 AKT1S1Q96B36 256 aa12.5□□□□□ -0.41
SMAD4-215ENST00000592911 SHANK3Q9BYB0 1731 aa12.5□□□□□ -0.41
SMAD4-215ENST00000592911 TUBGCP6Q96RT7 1819 aa12.49□□□□□ -0.41
SMAD4-215ENST00000592911 KTN1Q86UP2 1357 aaKnown RBP12.49□□□□□ -0.41
SMAD4-215ENST00000592911 ZNF827Q17R98 1081 aa12.46□□□□□ -0.41
SMAD4-215ENST00000592911 PUS7Q96PZ0 661 aaKnown RBP12.46□□□□□ -0.41
SMAD4-215ENST00000592911 LRRC4BQ9NT99 713 aa12.46□□□□□ -0.41
SMAD4-215ENST00000592911 NLRP2Q9NX02 1062 aa12.46□□□□□ -0.41
SMAD4-215ENST00000592911 ANKRD36BQ8N2N9 1353 aa12.45□□□□□ -0.42
SMAD4-215ENST00000592911 PNPLA7Q6ZV29 1317 aa12.45□□□□□ -0.42
SMAD4-215ENST00000592911 FKBP8Q14318 412 aa12.45□□□□□ -0.42
SMAD4-215ENST00000592911 EDC4Q6P2E9 1401 aaKnown RBP12.45□□□□□ -0.42
SMAD4-215ENST00000592911 CGNL1Q0VF96 1302 aa12.44□□□□□ -0.42
SMAD4-215ENST00000592911 ACSBG1Q96GR2 724 aa12.44□□□□□ -0.42
SMAD4-215ENST00000592911 TFCP2L1Q9NZI6 479 aa12.44□□□□□ -0.42
SMAD4-215ENST00000592911 ROCK2O75116 1388 aaKnown RBP12.43□□□□□ -0.42
SMAD4-215ENST00000592911 FLAD1Q8NFF5 587 aa12.43□□□□□ -0.42
SMAD4-215ENST00000592911 ANKRD24Q8TF21 1146 aa12.43□□□□□ -0.42
SMAD4-215ENST00000592911 DOT1LQ8TEK3 1739 aa12.42□□□□□ -0.42
SMAD4-215ENST00000592911 CD2APQ9Y5K6 639 aa12.42□□□□□ -0.42
SMAD4-215ENST00000592911 CD163L1Q9NR16 1453 aa12.41□□□□□ -0.42
SMAD4-215ENST00000592911 SLC24A1O60721 1099 aa12.41□□□□□ -0.42
SMAD4-215ENST00000592911 HDGFL2Q7Z4V5 671 aaPredicted RBP12.41□□□□□ -0.42
SMAD4-215ENST00000592911 IP6K1Q92551 441 aa12.41□□□□□ -0.42
SMAD4-215ENST00000592911 ADCY9O60503 1353 aa12.41□□□□□ -0.42
SMAD4-215ENST00000592911 NSD3Q9BZ95 1437 aa12.4□□□□□ -0.42
SMAD4-215ENST00000592911 TAF1LQ8IZX4 1826 aa12.4□□□□□ -0.42
SMAD4-215ENST00000592911 SPDYE4A6NLX3 237 aa12.4□□□□□ -0.42
SMAD4-215ENST00000592911 SOX12O15370 315 aa12.4□□□□□ -0.42
SMAD4-215ENST00000592911 TERF2IPQ9NYB0 399 aa12.4□□□□□ -0.42
SMAD4-215ENST00000592911 C5P01031 1676 aa12.39□□□□□ -0.43
SMAD4-215ENST00000592911 L3MBTL2Q969R5 705 aa12.39□□□□□ -0.43
SMAD4-215ENST00000592911 RTL1A6NKG5 1358 aa12.39□□□□□ -0.43
SMAD4-215ENST00000592911 NSD2O96028 1365 aa12.39□□□□□ -0.43
SMAD4-215ENST00000592911 ATP10DQ9P241 1426 aa12.38□□□□□ -0.43
SMAD4-215ENST00000592911 HSPA6P17066 643 aa12.38□□□□□ -0.43
SMAD4-215ENST00000592911 USP47Q96K76 1375 aa12.38□□□□□ -0.43
SMAD4-215ENST00000592911 NLGN2Q8NFZ4 835 aa12.37□□□□□ -0.43
SMAD4-215ENST00000592911 GPBP1L1Q9HC44 474 aaPredicted RBP12.37□□□□□ -0.43
SMAD4-215ENST00000592911 CCNL1Q9UK58 526 aaPredicted RBP12.37□□□□□ -0.43
SMAD4-215ENST00000592911 SPDYE2BA6NHP3 402 aa12.36□□□□□ -0.43
SMAD4-215ENST00000592911 SPDYE6P0CI01 402 aa12.36□□□□□ -0.43
SMAD4-215ENST00000592911 YBX3P16989 372 aaKnown RBP eCLIP12.36□□□□□ -0.434e-7■■□□□ 13.1
SMAD4-215ENST00000592911 SPDYE2Q495Y8 402 aa12.36□□□□□ -0.43
SMAD4-215ENST00000592911 NME9Q86XW9 330 aa12.36□□□□□ -0.43
SMAD4-215ENST00000592911 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.36□□□□□ -0.43
SMAD4-215ENST00000592911 PELP1Q8IZL8 1130 aaKnown RBP12.36□□□□□ -0.43
SMAD4-215ENST00000592911 KLHL34Q8N239 644 aa12.36□□□□□ -0.43
SMAD4-215ENST00000592911 CICQ96RK0 1608 aaPredicted RBP12.36□□□□□ -0.43
SMAD4-215ENST00000592911 PRIM1P49642 420 aaKnown RBP12.35□□□□□ -0.43
SMAD4-215ENST00000592911 ZCRB1Q8TBF4 217 aaKnown RBP12.35□□□□□ -0.43
SMAD4-215ENST00000592911 DDX54Q8TDD1 881 aaKnown RBP12.35□□□□□ -0.43
SMAD4-215ENST00000592911 A0A1W2PP64 1363 aa12.34□□□□□ -0.43
SMAD4-215ENST00000592911 KIF24Q5T7B8 1368 aa12.34□□□□□ -0.43
SMAD4-215ENST00000592911 UBR3Q6ZT12 1888 aa12.34□□□□□ -0.43
SMAD4-215ENST00000592911 COL23A1Q86Y22 540 aaPredicted RBP12.33□□□□□ -0.44
SMAD4-215ENST00000592911 SYTL4Q96C24 671 aaPredicted RBP12.33□□□□□ -0.44
SMAD4-215ENST00000592911 SMG6Q86US8 1419 aaKnown RBP12.33□□□□□ -0.44
SMAD4-215ENST00000592911 RGPD2P0DJD1 1756 aa12.33□□□□□ -0.44
SMAD4-215ENST00000592911 HOXC9P31274 260 aa12.32□□□□□ -0.44
SMAD4-215ENST00000592911 SMARCC1Q92922 1105 aaPredicted RBP12.32□□□□□ -0.44
SMAD4-215ENST00000592911 COG3Q96JB2 828 aa12.32□□□□□ -0.44
SMAD4-215ENST00000592911 PCDH11XQ9BZA7 1347 aa12.32□□□□□ -0.44
SMAD4-215ENST00000592911 PCDH11YQ9BZA8 1340 aa12.32□□□□□ -0.44
SMAD4-215ENST00000592911 ITGB4P16144 1822 aa12.32□□□□□ -0.44
SMAD4-215ENST00000592911 KIF13BQ9NQT8 1826 aa12.32□□□□□ -0.44
SMAD4-215ENST00000592911 MEGF6O75095 1541 aa12.32□□□□□ -0.44
SMAD4-215ENST00000592911 PLEKHG2Q9H7P9 1386 aa12.31□□□□□ -0.44
SMAD4-215ENST00000592911 C4BP0C0L5 1744 aa12.31□□□□□ -0.44
SMAD4-215ENST00000592911 MAP3K19Q56UN5 1328 aa12.31□□□□□ -0.44
SMAD4-215ENST00000592911 APLP1P51693 650 aa12.3□□□□□ -0.44
SMAD4-215ENST00000592911 TMC1Q8TDI8 760 aa12.3□□□□□ -0.44
SMAD4-215ENST00000592911 RBM42Q9BTD8 480 aaKnown RBP12.3□□□□□ -0.44
SMAD4-215ENST00000592911 SSUH2Q9Y2M2 353 aa12.3□□□□□ -0.44
SMAD4-215ENST00000592911 PKD1L3Q7Z443 1732 aa12.29□□□□□ -0.44
SMAD4-215ENST00000592911 SSFA2P28290 1259 aa12.29□□□□□ -0.44
SMAD4-215ENST00000592911 AMPHP49418 695 aa12.29□□□□□ -0.44
SMAD4-215ENST00000592911 RAPGEF4Q8WZA2 1011 aa12.29□□□□□ -0.44
SMAD4-215ENST00000592911 SLC12A5Q9H2X9 1139 aa12.29□□□□□ -0.44
SMAD4-215ENST00000592911 PALLDQ8WX93 1383 aa12.29□□□□□ -0.44
SMAD4-215ENST00000592911 MAP2P11137 1827 aaKnown RBP12.28□□□□□ -0.44
SMAD4-215ENST00000592911 CARD11Q9BXL7 1154 aa12.28□□□□□ -0.44
SMAD4-215ENST00000592911 ZNF831Q5JPB2 1677 aa12.28□□□□□ -0.44
SMAD4-215ENST00000592911 TOGARAM1Q9Y4F4 1720 aa12.28□□□□□ -0.44
SMAD4-215ENST00000592911 TATP17735 454 aaPredicted RBP12.27□□□□□ -0.45
SMAD4-215ENST00000592911 INSRP06213 1382 aa12.27□□□□□ -0.45
SMAD4-215ENST00000592911 LTV1Q96GA3 475 aaPredicted RBP12.26□□□□□ -0.45
SMAD4-215ENST00000592911 AK7Q96M32 723 aa12.26□□□□□ -0.45
SMAD4-215ENST00000592911 IGSF1Q8N6C5 1336 aa12.26□□□□□ -0.45
SMAD4-215ENST00000592911 NCAPD2Q15021 1401 aa12.26□□□□□ -0.45
SMAD4-215ENST00000592911 KIF3CO14782 793 aa12.25□□□□□ -0.45
SMAD4-215ENST00000592911 TOMM70O94826 608 aa12.25□□□□□ -0.45
SMAD4-215ENST00000592911 KCNQ4P56696 695 aa12.25□□□□□ -0.45
SMAD4-215ENST00000592911 FLT4P35916 1363 aa12.25□□□□□ -0.45
SMAD4-215ENST00000592911 ARFGEF1Q9Y6D6 1849 aa12.25□□□□□ -0.45
SMAD4-215ENST00000592911 BRCA1P38398 1863 aaKnown RBP12.25□□□□□ -0.45
SMAD4-215ENST00000592911 TGFB2P61812 414 aa12.24□□□□□ -0.45
SMAD4-215ENST00000592911 NKX1-1Q15270 411 aaPredicted RBP12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms