RNA–Protein interactions for RNA: ENST00000589428.5

R3HDM4-204, Transcript of R3H domain containing 4, humanhuman

TSL 3

Gene R3HDM4, Length 1,704 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
R3HDM4-204ENST00000589428 SOCS7O14512 581 aa28.42■■■□□ 2.14
R3HDM4-204ENST00000589428 FAM182BQ5T319 152 aa28.41■■■□□ 2.14
R3HDM4-204ENST00000589428 EP400Q96L91 3159 aa28.41■■■□□ 2.14
R3HDM4-204ENST00000589428 U2SURPO15042 1029 aaKnown RBP28.39■■■□□ 2.14
R3HDM4-204ENST00000589428 SULT6B1Q6IMI4 303 aa28.39■■■□□ 2.14
R3HDM4-204ENST00000589428 ZCRB1Q8TBF4 217 aaKnown RBP28.39■■■□□ 2.14
R3HDM4-204ENST00000589428 FAM196AQ6ZSG2 479 aa28.38■■■□□ 2.13
R3HDM4-204ENST00000589428 NUDCQ9Y266 331 aa28.38■■■□□ 2.13
R3HDM4-204ENST00000589428 KDRP35968 1356 aa28.38■■■□□ 2.13
R3HDM4-204ENST00000589428 AEBP1Q8IUX7 1158 aa28.38■■■□□ 2.13
R3HDM4-204ENST00000589428 MARCH10Q8NA82 808 aaPredicted RBP28.38■■■□□ 2.13
R3HDM4-204ENST00000589428 PNISRQ8TF01 805 aaKnown RBP28.38■■■□□ 2.13
R3HDM4-204ENST00000589428 PLEKHG2Q9H7P9 1386 aa28.37■■■□□ 2.13
R3HDM4-204ENST00000589428 PKD1L3Q7Z443 1732 aa28.36■■■□□ 2.13
R3HDM4-204ENST00000589428 SHANK3Q9BYB0 1731 aa28.35■■■□□ 2.13
R3HDM4-204ENST00000589428 DDX54Q8TDD1 881 aaKnown RBP28.35■■■□□ 2.13
R3HDM4-204ENST00000589428 PCDH11XQ9BZA7 1347 aa28.34■■■□□ 2.13
R3HDM4-204ENST00000589428 PCDH11YQ9BZA8 1340 aa28.34■■■□□ 2.13
R3HDM4-204ENST00000589428 HMOX1P09601 288 aa28.34■■■□□ 2.13
R3HDM4-204ENST00000589428 SPG7Q9UQ90 795 aa28.34■■■□□ 2.13
R3HDM4-204ENST00000589428 UPF1Q92900 1129 aaKnown RBP eCLIP28.33■■■□□ 2.138e-10■■■□□ 15.9
R3HDM4-204ENST00000589428 FAM9BQ8IZU0 186 aa28.32■■■□□ 2.12
R3HDM4-204ENST00000589428 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP28.32■■■□□ 2.12
R3HDM4-204ENST00000589428 BCL9O00512 1426 aa28.3■■■□□ 2.12
R3HDM4-204ENST00000589428 U2AF1L5P0DN76 240 aaPredicted RBP28.29■■■□□ 2.12
R3HDM4-204ENST00000589428 U2AF1Q01081 240 aaKnown RBP eCLIP28.29■■■□□ 2.12
R3HDM4-204ENST00000589428 PLEKHO1Q53GL0 409 aaPredicted RBP28.28■■■□□ 2.12
R3HDM4-204ENST00000589428 SF3B2Q13435 895 aaKnown RBP28.27■■■□□ 2.12
R3HDM4-204ENST00000589428 AMOTQ4VCS5 1084 aa28.27■■■□□ 2.12
R3HDM4-204ENST00000589428 CCDC125Q86Z20 511 aa28.27■■■□□ 2.12
R3HDM4-204ENST00000589428 TRIM37O94972 964 aa28.25■■■□□ 2.11
R3HDM4-204ENST00000589428 CYP27B1O15528 508 aa28.24■■■□□ 2.11
R3HDM4-204ENST00000589428 SBF2Q86WG5 1849 aa28.24■■■□□ 2.11
R3HDM4-204ENST00000589428 WDR43Q15061 677 aaKnown RBP eCLIP28.23■■■□□ 2.11
R3HDM4-204ENST00000589428 YTHDC1Q96MU7 727 aaKnown RBP28.23■■■□□ 2.11
R3HDM4-204ENST00000589428 ZNF530Q6P9A1 599 aaPredicted RBP28.22■■■□□ 2.11
R3HDM4-204ENST00000589428 IFNL2Q8IZJ0 200 aa28.22■■■□□ 2.11
R3HDM4-204ENST00000589428 RSPH6AQ9H0K4 717 aa28.22■■■□□ 2.11
R3HDM4-204ENST00000589428 TNS1Q9HBL0 1735 aaKnown RBP28.22■■■□□ 2.11
R3HDM4-204ENST00000589428 ADAMTS8Q9UP79 889 aa28.21■■■□□ 2.11
R3HDM4-204ENST00000589428 NHSQ6T4R5 1651 aa28.21■■■□□ 2.11
R3HDM4-204ENST00000589428 PRKAR2BP31323 418 aa28.21■■■□□ 2.11
R3HDM4-204ENST00000589428 ACSBG1Q96GR2 724 aa28.21■■■□□ 2.11
R3HDM4-204ENST00000589428 DOT1LQ8TEK3 1739 aa28.2■■■□□ 2.11
R3HDM4-204ENST00000589428 FCHSD2O94868 740 aa28.2■■■□□ 2.1
R3HDM4-204ENST00000589428 PHKG2P15735 406 aa28.2■■■□□ 2.1
R3HDM4-204ENST00000589428 C1orf141Q5JVX7 400 aa28.19■■■□□ 2.1
R3HDM4-204ENST00000589428 BCL11BQ9C0K0 894 aaPredicted RBP28.18■■■□□ 2.1
R3HDM4-204ENST00000589428 HSP90AB1P08238 724 aaKnown RBP28.16■■■□□ 2.1
R3HDM4-204ENST00000589428 BAG6P46379 1132 aa28.16■■■□□ 2.1
R3HDM4-204ENST00000589428 KAT6BQ8WYB5 2073 aa28.15■■■□□ 2.1
R3HDM4-204ENST00000589428 NKX1-1Q15270 411 aaPredicted RBP28.15■■■□□ 2.1
R3HDM4-204ENST00000589428 SYTL4Q96C24 671 aaPredicted RBP28.15■■■□□ 2.1
R3HDM4-204ENST00000589428 NEFMP07197 916 aa28.15■■■□□ 2.1
R3HDM4-204ENST00000589428 KCNQ2O43526 872 aa28.14■■■□□ 2.1
R3HDM4-204ENST00000589428 APBA3O96018 575 aa28.14■■■□□ 2.1
R3HDM4-204ENST00000589428 MTHFSDQ2M296 383 aaKnown RBP28.14■■■□□ 2.1
R3HDM4-204ENST00000589428 GAS2L2Q8NHY3 880 aa28.14■■■□□ 2.1
R3HDM4-204ENST00000589428 PNNQ9H307 717 aaKnown RBP28.14■■■□□ 2.1
R3HDM4-204ENST00000589428 TOGARAM1Q9Y4F4 1720 aa28.13■■■□□ 2.09
R3HDM4-204ENST00000589428 PRIM1P49642 420 aaKnown RBP28.12■■■□□ 2.09
R3HDM4-204ENST00000589428 AKAP4Q5JQC9 854 aa28.12■■■□□ 2.09
R3HDM4-204ENST00000589428 PTF1AQ7RTS3 328 aa28.11■■■□□ 2.09
R3HDM4-204ENST00000589428 DEFB132Q7Z7B7 95 aa28.11■■■□□ 2.09
R3HDM4-204ENST00000589428 DCAF5Q96JK2 942 aa28.11■■■□□ 2.09
R3HDM4-204ENST00000589428 PHACTR3Q96KR7 559 aa28.1■■■□□ 2.09
R3HDM4-204ENST00000589428 BTAF1O14981 1849 aa28.09■■■□□ 2.09
R3HDM4-204ENST00000589428 MAPK8IP3Q9UPT6 1336 aa28.09■■■□□ 2.09
R3HDM4-204ENST00000589428 KDM6AO15550 1401 aaPredicted RBP28.08■■■□□ 2.09
R3HDM4-204ENST00000589428 HNRNPUQ00839 825 aaKnown RBP eCLIP28.07■■■□□ 2.08
R3HDM4-204ENST00000589428 MAP3K5Q99683 1374 aa28.07■■■□□ 2.08
R3HDM4-204ENST00000589428 EN1Q05925 392 aaPredicted RBP28.06■■■□□ 2.08
R3HDM4-204ENST00000589428 MPRIPQ6WCQ1 1025 aa28.06■■■□□ 2.08
R3HDM4-204ENST00000589428 CCDC146Q8IYE0 955 aa28.06■■■□□ 2.08
R3HDM4-204ENST00000589428 PLEKHF1Q96S99 279 aa28.05■■■□□ 2.08
R3HDM4-204ENST00000589428 ITGB4P16144 1822 aa28.05■■■□□ 2.08
R3HDM4-204ENST00000589428 RGPD3A6NKT7 1758 aaPredicted RBP28.05■■■□□ 2.08
R3HDM4-204ENST00000589428 RGPD4Q7Z3J3 1758 aa28.05■■■□□ 2.08
R3HDM4-204ENST00000589428 TMOD3Q9NYL9 352 aa28.04■■■□□ 2.08
R3HDM4-204ENST00000589428 GNAT3A8MTJ3 354 aa28.04■■■□□ 2.08
R3HDM4-204ENST00000589428 ERVV-2B6SEH9 535 aa28.04■■■□□ 2.08
R3HDM4-204ENST00000589428 SCN11AQ9UI33 1791 aa28.03■■■□□ 2.08
R3HDM4-204ENST00000589428 PLSCR1O15162 318 aa28.03■■■□□ 2.08
R3HDM4-204ENST00000589428 SENP3-EIF4A1A0A087X0R7 540 aa28.01■■■□□ 2.07
R3HDM4-204ENST00000589428 CABP4P57796 275 aa28.01■■■□□ 2.07
R3HDM4-204ENST00000589428 EZH2Q15910 746 aaKnown RBP28.01■■■□□ 2.07
R3HDM4-204ENST00000589428 CAMKK2Q96RR4 588 aa28.01■■■□□ 2.07
R3HDM4-204ENST00000589428 RUNDC1Q96C34 613 aa28■■■□□ 2.07
R3HDM4-204ENST00000589428 ADAMTS7Q9UKP4 1686 aa28■■■□□ 2.07
R3HDM4-204ENST00000589428 RNMTO43148 476 aaKnown RBP27.99■■■□□ 2.07
R3HDM4-204ENST00000589428 VIRMAQ69YN4 1812 aaKnown RBP27.99■■■□□ 2.07
R3HDM4-204ENST00000589428 PIGBQ92521 554 aa27.98■■■□□ 2.07
R3HDM4-204ENST00000589428 NFE2L2Q16236 605 aa27.98■■■□□ 2.07
R3HDM4-204ENST00000589428 RTF1Q92541 710 aaKnown RBP27.98■■■□□ 2.07
R3HDM4-204ENST00000589428 LGR6Q9HBX8 967 aa27.98■■■□□ 2.07
R3HDM4-204ENST00000589428 RREB1Q92766 1687 aa27.97■■■□□ 2.07
R3HDM4-204ENST00000589428 MRC1P22897 1456 aa27.97■■■□□ 2.07
R3HDM4-204ENST00000589428 APAF1O14727 1248 aa27.95■■■□□ 2.06
R3HDM4-204ENST00000589428 SMARCC1Q92922 1105 aaPredicted RBP27.95■■■□□ 2.06
R3HDM4-204ENST00000589428 SLC52A2Q9HAB3 445 aa27.95■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 116.5 ms