RNA–Protein interactions for RNA: ENST00000578112.5

SMARCE1-214, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 5

Gene SMARCE1, Length 2,384 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-214ENST00000578112 PDGFDQ9GZP0 370 aaPredicted RBP15.77■□□□□ 0.12
SMARCE1-214ENST00000578112 AMPHP49418 695 aa15.77■□□□□ 0.11
SMARCE1-214ENST00000578112 TMF1P82094 1093 aa15.77■□□□□ 0.11
SMARCE1-214ENST00000578112 ZNF827Q17R98 1081 aa15.76■□□□□ 0.11
SMARCE1-214ENST00000578112 INSRP06213 1382 aa15.76■□□□□ 0.11
SMARCE1-214ENST00000578112 LRRC4BQ9NT99 713 aa15.75■□□□□ 0.11
SMARCE1-214ENST00000578112 MEGF6O75095 1541 aa15.75■□□□□ 0.11
SMARCE1-214ENST00000578112 ANKRD26Q9UPS8 1709 aa15.74■□□□□ 0.11
SMARCE1-214ENST00000578112 RGPD2P0DJD1 1756 aa15.74■□□□□ 0.11
SMARCE1-214ENST00000578112 PKD1L3Q7Z443 1732 aa15.74■□□□□ 0.11
SMARCE1-214ENST00000578112 NCAPD2Q15021 1401 aa15.74■□□□□ 0.11
SMARCE1-214ENST00000578112 NSD3Q9BZ95 1437 aa15.74■□□□□ 0.11
SMARCE1-214ENST00000578112 PNPLA7Q6ZV29 1317 aa15.74■□□□□ 0.11
SMARCE1-214ENST00000578112 ST20-MTHFSA0A0A6YYL1 179 aa15.74■□□□□ 0.11
SMARCE1-214ENST00000578112 FLAD1Q8NFF5 587 aa15.74■□□□□ 0.11
SMARCE1-214ENST00000578112 TIMELESSQ9UNS1 1208 aa15.73■□□□□ 0.11
SMARCE1-214ENST00000578112 C5P01031 1676 aa15.73■□□□□ 0.11
SMARCE1-214ENST00000578112 FLT4P35916 1363 aa15.73■□□□□ 0.11
SMARCE1-214ENST00000578112 PCDH11XQ9BZA7 1347 aa15.72■□□□□ 0.11
SMARCE1-214ENST00000578112 PCDH11YQ9BZA8 1340 aa15.72■□□□□ 0.11
SMARCE1-214ENST00000578112 DDX54Q8TDD1 881 aaKnown RBP15.72■□□□□ 0.11
SMARCE1-214ENST00000578112 USP47Q96K76 1375 aa15.72■□□□□ 0.11
SMARCE1-214ENST00000578112 ZNF784Q8NCA9 323 aaPredicted RBP15.72■□□□□ 0.11
SMARCE1-214ENST00000578112 TATP17735 454 aaPredicted RBP15.71■□□□□ 0.11
SMARCE1-214ENST00000578112 RAPGEF4Q8WZA2 1011 aa15.71■□□□□ 0.11
SMARCE1-214ENST00000578112 PELP1Q8IZL8 1130 aaKnown RBP15.71■□□□□ 0.11
SMARCE1-214ENST00000578112 FYB1O15117 783 aa15.7■□□□□ 0.1
SMARCE1-214ENST00000578112 PRIM1P49642 420 aaKnown RBP15.7■□□□□ 0.1
SMARCE1-214ENST00000578112 SMARCC1Q92922 1105 aaPredicted RBP15.7■□□□□ 0.1
SMARCE1-214ENST00000578112 TFCP2L1Q9NZI6 479 aa15.7■□□□□ 0.1
SMARCE1-214ENST00000578112 TAF1LQ8IZX4 1826 aa15.7■□□□□ 0.1
SMARCE1-214ENST00000578112 LTV1Q96GA3 475 aaPredicted RBP15.69■□□□□ 0.1
SMARCE1-214ENST00000578112 CCNL1Q9UK58 526 aaPredicted RBP15.69■□□□□ 0.1
SMARCE1-214ENST00000578112 GRIN3BO60391 1043 aa15.69■□□□□ 0.1
SMARCE1-214ENST00000578112 NBPF6Q5VWK0 638 aa15.67■□□□□ 0.1
SMARCE1-214ENST00000578112 NBPF4Q96M43 638 aa15.67■□□□□ 0.1
SMARCE1-214ENST00000578112 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.67■□□□□ 0.13e-7■■■□□ 16.6
SMARCE1-214ENST00000578112 GPR162Q16538 588 aa15.66■□□□□ 0.1
SMARCE1-214ENST00000578112 ZNF831Q5JPB2 1677 aa15.66■□□□□ 0.1
SMARCE1-214ENST00000578112 NKX1-1Q15270 411 aaPredicted RBP15.65■□□□□ 0.1
SMARCE1-214ENST00000578112 SYTL4Q96C24 671 aaPredicted RBP15.65■□□□□ 0.1
SMARCE1-214ENST00000578112 CD2APQ9Y5K6 639 aa15.65■□□□□ 0.1
SMARCE1-214ENST00000578112 CLSPNQ9HAW4 1339 aa15.65■□□□□ 0.1
SMARCE1-214ENST00000578112 ITGB4P16144 1822 aa15.65■□□□□ 0.1
SMARCE1-214ENST00000578112 C4BP0C0L5 1744 aa15.65■□□□□ 0.1
SMARCE1-214ENST00000578112 TOGARAM1Q9Y4F4 1720 aa15.65■□□□□ 0.1
SMARCE1-214ENST00000578112 KAT6BQ8WYB5 2073 aa15.64■□□□□ 0.09
SMARCE1-214ENST00000578112 PALLDQ8WX93 1383 aa15.63■□□□□ 0.09
SMARCE1-214ENST00000578112 C1QTNF8P60827 252 aa15.63■□□□□ 0.09
SMARCE1-214ENST00000578112 GGNBP2Q9H3C7 697 aa15.63■□□□□ 0.09
SMARCE1-214ENST00000578112 SRCAPQ6ZRS2 3230 aa15.62■□□□□ 0.09
SMARCE1-214ENST00000578112 RRS1Q15050 365 aaKnown RBP15.62■□□□□ 0.09
SMARCE1-214ENST00000578112 SPG7Q9UQ90 795 aa15.62■□□□□ 0.09
SMARCE1-214ENST00000578112 WASHC2AQ641Q2 1341 aa15.62■□□□□ 0.09
SMARCE1-214ENST00000578112 UBR3Q6ZT12 1888 aa15.61■□□□□ 0.09
SMARCE1-214ENST00000578112 COL23A1Q86Y22 540 aaPredicted RBP15.61■□□□□ 0.09
SMARCE1-214ENST00000578112 MAP2P11137 1827 aaKnown RBP15.61■□□□□ 0.09
SMARCE1-214ENST00000578112 SSFA2P28290 1259 aa15.59■□□□□ 0.09
SMARCE1-214ENST00000578112 HSP90AB2PQ58FF8 381 aa15.59■□□□□ 0.09
SMARCE1-214ENST00000578112 CICQ96RK0 1608 aaPredicted RBP15.58■□□□□ 0.09
SMARCE1-214ENST00000578112 GIGYF1O75420 1035 aaPredicted RBP15.58■□□□□ 0.08
SMARCE1-214ENST00000578112 CYP27B1O15528 508 aa15.57■□□□□ 0.08
SMARCE1-214ENST00000578112 TRIM26Q12899 539 aaPredicted RBP15.57■□□□□ 0.08
SMARCE1-214ENST00000578112 AK7Q96M32 723 aa15.57■□□□□ 0.08
SMARCE1-214ENST00000578112 USHBP1Q8N6Y0 703 aa15.56■□□□□ 0.08
SMARCE1-214ENST00000578112 FBLN1P23142 703 aa15.55■□□□□ 0.08
SMARCE1-214ENST00000578112 NLGN2Q8NFZ4 835 aa15.55■□□□□ 0.08
SMARCE1-214ENST00000578112 CARD14Q9BXL6 1004 aa15.55■□□□□ 0.08
SMARCE1-214ENST00000578112 KIF13BQ9NQT8 1826 aa15.55■□□□□ 0.08
SMARCE1-214ENST00000578112 MSH5O43196 834 aa15.55■□□□□ 0.08
SMARCE1-214ENST00000578112 ADCY9O60503 1353 aa15.55■□□□□ 0.08
SMARCE1-214ENST00000578112 HSP90AB1P08238 724 aaKnown RBP15.54■□□□□ 0.08
SMARCE1-214ENST00000578112 IFNL2Q8IZJ0 200 aa15.54■□□□□ 0.08
SMARCE1-214ENST00000578112 KLHL34Q8N239 644 aa15.54■□□□□ 0.08
SMARCE1-214ENST00000578112 SENP3-EIF4A1A0A087X0R7 540 aa15.53■□□□□ 0.08
SMARCE1-214ENST00000578112 MPRIPQ6WCQ1 1025 aa15.53■□□□□ 0.08
SMARCE1-214ENST00000578112 TMOD3Q9NYL9 352 aa15.53■□□□□ 0.08
SMARCE1-214ENST00000578112 EMILIN1Q9Y6C2 1016 aa15.53■□□□□ 0.08
SMARCE1-214ENST00000578112 YBX3P16989 372 aaKnown RBP eCLIP15.52■□□□□ 0.082e-7■■□□□ 12.5
SMARCE1-214ENST00000578112 KCNQ4P56696 695 aa15.52■□□□□ 0.08
SMARCE1-214ENST00000578112 PIGBQ92521 554 aa15.52■□□□□ 0.08
SMARCE1-214ENST00000578112 LOC102724428A0A0B4J2F2 783 aa15.51■□□□□ 0.07
SMARCE1-214ENST00000578112 ADRA2BP18089 450 aa15.51■□□□□ 0.07
SMARCE1-214ENST00000578112 SIK1P57059 783 aa15.51■□□□□ 0.07
SMARCE1-214ENST00000578112 KDRP35968 1356 aa15.51■□□□□ 0.07
SMARCE1-214ENST00000578112 ERVV-2B6SEH9 535 aa15.51■□□□□ 0.07
SMARCE1-214ENST00000578112 PHKG2P15735 406 aa15.51■□□□□ 0.07
SMARCE1-214ENST00000578112 COL5A3P25940 1745 aaPredicted RBP15.51■□□□□ 0.07
SMARCE1-214ENST00000578112 RC3H1Q5TC82 1133 aaKnown RBP15.5■□□□□ 0.07
SMARCE1-214ENST00000578112 EYA1Q99502 592 aa15.5■□□□□ 0.07
SMARCE1-214ENST00000578112 ATP10DQ9P241 1426 aa15.5■□□□□ 0.07
SMARCE1-214ENST00000578112 IGSF1Q8N6C5 1336 aa15.5■□□□□ 0.07
SMARCE1-214ENST00000578112 POLKQ9UBT6 870 aa15.49■□□□□ 0.07
SMARCE1-214ENST00000578112 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.48■□□□□ 0.07
SMARCE1-214ENST00000578112 AMOTQ4VCS5 1084 aa15.48■□□□□ 0.07
SMARCE1-214ENST00000578112 CNTNAP4Q9C0A0 1308 aa15.48■□□□□ 0.07
SMARCE1-214ENST00000578112 KIAA1551Q9HCM1 1747 aa15.48■□□□□ 0.07
SMARCE1-214ENST00000578112 LINC00116Q8NCU8 138 aa15.47■□□□□ 0.07
SMARCE1-214ENST00000578112 DCAF5Q96JK2 942 aa15.47■□□□□ 0.07
SMARCE1-214ENST00000578112 TGFB2P61812 414 aa15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms