RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 AKT1S1Q96B36 256 aa29.51■■■□□ 2.31
VPS53-216ENST00000574029 GGNBP2Q9H3C7 697 aa29.51■■■□□ 2.31
VPS53-216ENST00000574029 LY75O60449 1722 aa29.51■■■□□ 2.31
VPS53-216ENST00000574029 KIF20BQ96Q89 1820 aa29.5■■■□□ 2.31
VPS53-216ENST00000574029 PRIM1P49642 420 aaKnown RBP29.49■■■□□ 2.31
VPS53-216ENST00000574029 NSD2O96028 1365 aa29.49■■■□□ 2.31
VPS53-216ENST00000574029 NBPF6Q5VWK0 638 aa29.48■■■□□ 2.31
VPS53-216ENST00000574029 SYTL4Q96C24 671 aaPredicted RBP29.48■■■□□ 2.31
VPS53-216ENST00000574029 NBPF4Q96M43 638 aa29.48■■■□□ 2.31
VPS53-216ENST00000574029 ARXQ96QS3 562 aa29.47■■■□□ 2.31
VPS53-216ENST00000574029 COL24A1Q17RW2 1714 aa29.46■■■□□ 2.31
VPS53-216ENST00000574029 CDCA8Q53HL2 280 aa29.46■■■□□ 2.31
VPS53-216ENST00000574029 CGNL1Q0VF96 1302 aa29.45■■■□□ 2.31
VPS53-216ENST00000574029 TUBGCP6Q96RT7 1819 aa29.45■■■□□ 2.31
VPS53-216ENST00000574029 MAP3K5Q99683 1374 aa29.45■■■□□ 2.31
VPS53-216ENST00000574029 SMG6Q86US8 1419 aaKnown RBP29.45■■■□□ 2.3
VPS53-216ENST00000574029 SLC16A10Q8TF71 515 aa29.44■■■□□ 2.3
VPS53-216ENST00000574029 INSRP06213 1382 aa29.42■■■□□ 2.3
VPS53-216ENST00000574029 KIF24Q5T7B8 1368 aa29.42■■■□□ 2.3
VPS53-216ENST00000574029 USHBP1Q8N6Y0 703 aa29.42■■■□□ 2.3
VPS53-216ENST00000574029 PNPLA7Q6ZV29 1317 aa29.42■■■□□ 2.3
VPS53-216ENST00000574029 KCNQ4P56696 695 aa29.41■■■□□ 2.3
VPS53-216ENST00000574029 HSP90AB2PQ58FF8 381 aa29.41■■■□□ 2.3
VPS53-216ENST00000574029 RAPGEF4Q8WZA2 1011 aa29.4■■■□□ 2.3
VPS53-216ENST00000574029 FLT4P35916 1363 aa29.39■■■□□ 2.3
VPS53-216ENST00000574029 CARD14Q9BXL6 1004 aa29.38■■■□□ 2.29
VPS53-216ENST00000574029 TFCP2L1Q9NZI6 479 aa29.38■■■□□ 2.29
VPS53-216ENST00000574029 TATP17735 454 aaPredicted RBP29.37■■■□□ 2.29
VPS53-216ENST00000574029 CCNL1Q9UK58 526 aaPredicted RBP29.36■■■□□ 2.29
VPS53-216ENST00000574029 CHD4Q14839 1912 aa29.35■■■□□ 2.29
VPS53-216ENST00000574029 TIMELESSQ9UNS1 1208 aa29.34■■■□□ 2.29
VPS53-216ENST00000574029 NSD3Q9BZ95 1437 aa29.34■■■□□ 2.29
VPS53-216ENST00000574029 POLD1P28340 1107 aa29.33■■■□□ 2.29
VPS53-216ENST00000574029 PCDH11XQ9BZA7 1347 aa29.33■■■□□ 2.29
VPS53-216ENST00000574029 PCDH11YQ9BZA8 1340 aa29.33■■■□□ 2.29
VPS53-216ENST00000574029 ANKRD26Q9UPS8 1709 aa29.31■■■□□ 2.28
VPS53-216ENST00000574029 PKD1L3Q7Z443 1732 aa29.31■■■□□ 2.28
VPS53-216ENST00000574029 EMILIN1Q9Y6C2 1016 aa29.3■■■□□ 2.28
VPS53-216ENST00000574029 C5P01031 1676 aa29.3■■■□□ 2.28
VPS53-216ENST00000574029 ZNF784Q8NCA9 323 aaPredicted RBP29.29■■■□□ 2.28
VPS53-216ENST00000574029 NCAPD2Q15021 1401 aa29.28■■■□□ 2.28
VPS53-216ENST00000574029 TOGARAM1Q9Y4F4 1720 aa29.28■■■□□ 2.28
VPS53-216ENST00000574029 CYP27B1O15528 508 aa29.27■■■□□ 2.28
VPS53-216ENST00000574029 ITGB4P16144 1822 aa29.27■■■□□ 2.28
VPS53-216ENST00000574029 COL23A1Q86Y22 540 aaPredicted RBP29.26■■■□□ 2.27
VPS53-216ENST00000574029 TAF1LQ8IZX4 1826 aa29.26■■■□□ 2.27
VPS53-216ENST00000574029 KLHL34Q8N239 644 aa29.25■■■□□ 2.27
VPS53-216ENST00000574029 MAP2P11137 1827 aaKnown RBP29.24■■■□□ 2.27
VPS53-216ENST00000574029 UTRNP46939 3433 aa29.24■■■□□ 2.27
VPS53-216ENST00000574029 GPR162Q16538 588 aa29.23■■■□□ 2.27
VPS53-216ENST00000574029 MPRIPQ6WCQ1 1025 aa29.23■■■□□ 2.27
VPS53-216ENST00000574029 PALLDQ8WX93 1383 aa29.23■■■□□ 2.27
VPS53-216ENST00000574029 WASHC2AQ641Q2 1341 aa29.22■■■□□ 2.27
VPS53-216ENST00000574029 CLSPNQ9HAW4 1339 aa29.22■■■□□ 2.27
VPS53-216ENST00000574029 HMGB2P26583 209 aaKnown RBP29.22■■■□□ 2.27
VPS53-216ENST00000574029 PPM1GO15355 546 aaPredicted RBP29.21■■■□□ 2.27
VPS53-216ENST00000574029 MSH5O43196 834 aa29.2■■■□□ 2.26
VPS53-216ENST00000574029 NKX1-1Q15270 411 aaPredicted RBP29.19■■■□□ 2.26
VPS53-216ENST00000574029 NLGN2Q8NFZ4 835 aa29.19■■■□□ 2.26
VPS53-216ENST00000574029 C4BP0C0L5 1744 aa29.17■■■□□ 2.26
VPS53-216ENST00000574029 SMARCC1Q92922 1105 aaPredicted RBP29.17■■■□□ 2.26
VPS53-216ENST00000574029 SPG7Q9UQ90 795 aa29.17■■■□□ 2.26
VPS53-216ENST00000574029 FLAD1Q8NFF5 587 aa29.16■■■□□ 2.26
VPS53-216ENST00000574029 EYA1Q99502 592 aa29.16■■■□□ 2.26
VPS53-216ENST00000574029 POLKQ9UBT6 870 aa29.16■■■□□ 2.26
VPS53-216ENST00000574029 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP29.15■■■□□ 2.261e-6■■□□□ 14.2
VPS53-216ENST00000574029 PIGBQ92521 554 aa29.14■■■□□ 2.26
VPS53-216ENST00000574029 MSL1Q68DK7 614 aa29.13■■■□□ 2.25
VPS53-216ENST00000574029 PELP1Q8IZL8 1130 aaKnown RBP29.13■■■□□ 2.25
VPS53-216ENST00000574029 UBR3Q6ZT12 1888 aa29.11■■■□□ 2.25
VPS53-216ENST00000574029 PCGF6Q9BYE7 350 aa29.1■■■□□ 2.25
VPS53-216ENST00000574029 AK7Q96M32 723 aa29.08■■■□□ 2.25
VPS53-216ENST00000574029 POLR3GLQ9BT43 218 aa29.08■■■□□ 2.25
VPS53-216ENST00000574029 PHKG2P15735 406 aa29.07■■■□□ 2.24
VPS53-216ENST00000574029 YBX3P16989 372 aaKnown RBP eCLIP29.07■■■□□ 2.24
VPS53-216ENST00000574029 EIF4A2Q14240 407 aaKnown RBP29.07■■■□□ 2.24
VPS53-216ENST00000574029 AMIGO3Q86WK7 504 aa29.07■■■□□ 2.24
VPS53-216ENST00000574029 IFNL2Q8IZJ0 200 aa29.07■■■□□ 2.24
VPS53-216ENST00000574029 PLEKHG2Q9H7P9 1386 aa29.07■■■□□ 2.24
VPS53-216ENST00000574029 TMOD3Q9NYL9 352 aa29.06■■■□□ 2.24
VPS53-216ENST00000574029 CD2APQ9Y5K6 639 aa29.06■■■□□ 2.24
VPS53-216ENST00000574029 LOC102724428A0A0B4J2F2 783 aa29.05■■■□□ 2.24
VPS53-216ENST00000574029 GRIN3BO60391 1043 aa29.05■■■□□ 2.24
VPS53-216ENST00000574029 SIK1P57059 783 aa29.05■■■□□ 2.24
VPS53-216ENST00000574029 TNNT2P45379 298 aaPredicted RBP29.04■■■□□ 2.24
VPS53-216ENST00000574029 EIF4G2P78344 907 aaKnown RBP eCLIP29.04■■■□□ 2.242e-8■■■■■ 33.8
VPS53-216ENST00000574029 LINC00116Q8NCU8 138 aa29.02■■■□□ 2.24
VPS53-216ENST00000574029 ASAP1Q9ULH1 1129 aa29.02■■■□□ 2.24
VPS53-216ENST00000574029 IGSF1Q8N6C5 1336 aa29.01■■■□□ 2.23
VPS53-216ENST00000574029 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP29.01■■■□□ 2.23
VPS53-216ENST00000574029 HSPA5P11021 654 aaKnown RBP29.01■■■□□ 2.23
VPS53-216ENST00000574029 SSFA2P28290 1259 aa29.01■■■□□ 2.23
VPS53-216ENST00000574029 C1QTNF8P60827 252 aa29.01■■■□□ 2.23
VPS53-216ENST00000574029 PHF14O94880 888 aa29■■■□□ 2.23
VPS53-216ENST00000574029 SMIM5Q71RC9 77 aa29■■■□□ 2.23
VPS53-216ENST00000574029 PANK3Q9H999 370 aa29■■■□□ 2.23
VPS53-216ENST00000574029 ITPK1Q13572 414 aa28.99■■■□□ 2.23
VPS53-216ENST00000574029 ATG3Q9NT62 314 aa28.99■■■□□ 2.23
VPS53-216ENST00000574029 GOLGB1Q14789 3259 aaKnown RBP28.98■■■□□ 2.23
VPS53-216ENST00000574029 ATP6V1AP38606 617 aa28.97■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms