RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, human

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-238	ENST00000569430	TRIM35	Q9UPQ4	493 aa		13.69	□□□□□ -0.22
CLN3-238	ENST00000569430	NOS1	P29475	1434 aa		13.69	□□□□□ -0.22
CLN3-238	ENST00000569430	ADGRL1	O94910	1474 aa		13.69	□□□□□ -0.22
CLN3-238	ENST00000569430	NUTM1	Q86Y26	1132 aa		13.68	□□□□□ -0.22
CLN3-238	ENST00000569430	DUOX2	Q9NRD8	1548 aa		13.68	□□□□□ -0.22
CLN3-238	ENST00000569430	FYB1	O15117	783 aa		13.68	□□□□□ -0.22
CLN3-238	ENST00000569430	NOLC1	Q14978	699 aa	Known RBP eCLIP	13.68	□□□□□ -0.22
CLN3-238	ENST00000569430	RUFY2	Q8WXA3	655 aa		13.68	□□□□□ -0.22
CLN3-238	ENST00000569430	MEIS3	Q99687	375 aa		13.68	□□□□□ -0.22
CLN3-238	ENST00000569430	TRPM1	Q7Z4N2	1603 aa		13.68	□□□□□ -0.22
CLN3-238	ENST00000569430	VAMP4	O75379	141 aa		13.68	□□□□□ -0.22
CLN3-238	ENST00000569430	LETM1	O95202	739 aa	Predicted RBP	13.68	□□□□□ -0.22
CLN3-238	ENST00000569430	CCDC192	P0DO97	292 aa		13.68	□□□□□ -0.22
CLN3-238	ENST00000569430	CWC27	Q6UX04	472 aa	Known RBP	13.68	□□□□□ -0.22
CLN3-238	ENST00000569430	USP26	Q9BXU7	913 aa		13.68	□□□□□ -0.22
CLN3-238	ENST00000569430	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	13.68	□□□□□ -0.22
CLN3-238	ENST00000569430	SF3A1	Q15459	793 aa	Known RBP	13.67	□□□□□ -0.22
CLN3-238	ENST00000569430	KRT24	Q2M2I5	525 aa		13.67	□□□□□ -0.22
CLN3-238	ENST00000569430	GIMAP6	Q6P9H5	292 aa		13.67	□□□□□ -0.22
CLN3-238	ENST00000569430	PHACTR3	Q96KR7	559 aa		13.67	□□□□□ -0.22
CLN3-238	ENST00000569430	TMEM63C	Q9P1W3	806 aa		13.67	□□□□□ -0.22
CLN3-238	ENST00000569430	ATP10A	O60312	1499 aa		13.67	□□□□□ -0.22
CLN3-238	ENST00000569430	WDR7	Q9Y4E6	1490 aa		13.67	□□□□□ -0.22
CLN3-238	ENST00000569430	GNAI3	P08754	354 aa		13.67	□□□□□ -0.22
CLN3-238	ENST00000569430	MRPL50	Q8N5N7	158 aa	Known RBP	13.67	□□□□□ -0.22
CLN3-238	ENST00000569430	NGDN	Q8NEJ9	315 aa	Known RBP	13.67	□□□□□ -0.22
CLN3-238	ENST00000569430	IFIT2	P09913	472 aa	Known RBP	13.67	□□□□□ -0.22
CLN3-238	ENST00000569430	PPP1R9B	Q96SB3	815 aa		13.67	□□□□□ -0.22
CLN3-238	ENST00000569430	NPC1L1	Q9UHC9	1359 aa		13.67	□□□□□ -0.22
CLN3-238	ENST00000569430	FBXO31	Q5XUX0	539 aa	Predicted RBP	13.66	□□□□□ -0.22
CLN3-238	ENST00000569430	ZNF445	P59923	1031 aa		13.66	□□□□□ -0.22
CLN3-238	ENST00000569430	STK3	Q13188	491 aa		13.66	□□□□□ -0.22
CLN3-238	ENST00000569430	USP48	Q86UV5	1035 aa		13.66	□□□□□ -0.22
CLN3-238	ENST00000569430	CCAR2	Q8N163	923 aa	Known RBP	13.66	□□□□□ -0.22
CLN3-238	ENST00000569430	C14orf93	Q9H972	538 aa	Known RBP	13.66	□□□□□ -0.22
CLN3-238	ENST00000569430	MX1	P20591	662 aa		13.66	□□□□□ -0.22
CLN3-238	ENST00000569430	HS1BP3	Q53T59	392 aa		13.66	□□□□□ -0.22
CLN3-238	ENST00000569430	CCDC183	Q5T5S1	534 aa		13.66	□□□□□ -0.22
CLN3-238	ENST00000569430	HOMER1	Q86YM7	354 aa		13.66	□□□□□ -0.22
CLN3-238	ENST00000569430	CCDC83	Q8IWF9	413 aa		13.66	□□□□□ -0.22
CLN3-238	ENST00000569430	C16orf45	Q96MC5	204 aa	Predicted RBP	13.66	□□□□□ -0.22
CLN3-238	ENST00000569430	C9orf78	Q9NZ63	289 aa	Predicted RBP	13.66	□□□□□ -0.22
CLN3-238	ENST00000569430	IL16	Q14005	1332 aa		13.66	□□□□□ -0.22
CLN3-238	ENST00000569430	CCDC112	Q8NEF3	446 aa		13.65	□□□□□ -0.22
CLN3-238	ENST00000569430	LARP1B	Q659C4	914 aa	Known RBP	13.65	□□□□□ -0.22
CLN3-238	ENST00000569430	WAPL	Q7Z5K2	1190 aa		13.65	□□□□□ -0.22
CLN3-238	ENST00000569430	NME9	Q86XW9	330 aa		13.65	□□□□□ -0.22
CLN3-238	ENST00000569430	CKAP2L	Q8IYA6	745 aa		13.65	□□□□□ -0.22
CLN3-238	ENST00000569430	FILIP1	Q7Z7B0	1213 aa		13.65	□□□□□ -0.23
CLN3-238	ENST00000569430	FMNL2	Q96PY5	1086 aa		13.65	□□□□□ -0.23
CLN3-238	ENST00000569430	TNMD	Q9H2S6	317 aa		13.65	□□□□□ -0.23
CLN3-238	ENST00000569430	POLR1A	O95602	1720 aa	Predicted RBP	13.64	□□□□□ -0.23
CLN3-238	ENST00000569430	CNTROB	Q8N137	903 aa		13.64	□□□□□ -0.23
CLN3-238	ENST00000569430	CNPY2	Q9Y2B0	182 aa		13.64	□□□□□ -0.23
CLN3-238	ENST00000569430	TPM3	P06753	285 aa		13.64	□□□□□ -0.23
CLN3-238	ENST00000569430	GNL2	Q13823	731 aa	Known RBP	13.64	□□□□□ -0.23
CLN3-238	ENST00000569430	JAKMIP1	Q96N16	626 aa	Known RBP	13.64	□□□□□ -0.23
CLN3-238	ENST00000569430	DCTPP1	Q9H773	170 aa		13.64	□□□□□ -0.23
CLN3-238	ENST00000569430	CAST	P20810	708 aa	Known RBP	13.63	□□□□□ -0.23
CLN3-238	ENST00000569430	GORAB	Q5T7V8	394 aa		13.63	□□□□□ -0.23
CLN3-238	ENST00000569430	MYO5C	Q9NQX4	1742 aa		13.63	□□□□□ -0.23
CLN3-238	ENST00000569430	CCT4	P50991	539 aa	Known RBP	13.63	□□□□□ -0.23
CLN3-238	ENST00000569430	MAST1	Q9Y2H9	1570 aa		13.63	□□□□□ -0.23
CLN3-238	ENST00000569430	ERICH4	A6NGS2	130 aa		13.63	□□□□□ -0.23
CLN3-238	ENST00000569430	IDI1	Q13907	227 aa		13.63	□□□□□ -0.23
CLN3-238	ENST00000569430	ARHGAP45	Q92619	1136 aa		13.63	□□□□□ -0.23
CLN3-238	ENST00000569430	CGN	Q9P2M7	1197 aa	Known RBP	13.63	□□□□□ -0.23
CLN3-238	ENST00000569430	ASXL2	Q76L83	1435 aa		13.62	□□□□□ -0.23
CLN3-238	ENST00000569430	PDE1A	P54750	535 aa		13.62	□□□□□ -0.23
CLN3-238	ENST00000569430	NUTM2G	Q5VZR2	741 aa		13.62	□□□□□ -0.23
CLN3-238	ENST00000569430	NUP62CL	Q9H1M0	184 aa		13.62	□□□□□ -0.23
CLN3-238	ENST00000569430	GSPT1	P15170	499 aa	Known RBP	13.62	□□□□□ -0.23
CLN3-238	ENST00000569430	KRT85	P78386	507 aa		13.62	□□□□□ -0.23
CLN3-238	ENST00000569430	TXNDC2	Q86VQ3	553 aa		13.62	□□□□□ -0.23
CLN3-238	ENST00000569430	ANKRD44	Q8N8A2	993 aa		13.62	□□□□□ -0.23
CLN3-238	ENST00000569430	SPG7	Q9UQ90	795 aa		13.62	□□□□□ -0.23
CLN3-238	ENST00000569430	CLASRP	Q8N2M8	674 aa	Known RBP	13.62	□□□□□ -0.23
CLN3-238	ENST00000569430	GPT2	Q8TD30	523 aa		13.62	□□□□□ -0.23
CLN3-238	ENST00000569430	TFIP11	Q9UBB9	837 aa	Known RBP	13.62	□□□□□ -0.23
CLN3-238	ENST00000569430	CYP46A1	Q9Y6A2	500 aa		13.62	□□□□□ -0.23
CLN3-238	ENST00000569430	PRDM15	P57071	1507 aa	Predicted RBP	13.61	□□□□□ -0.23
CLN3-238	ENST00000569430	ZCCHC11	Q5TAX3	1644 aa	Known RBP	13.61	□□□□□ -0.23
CLN3-238	ENST00000569430	PRIMPOL	Q96LW4	560 aa		13.61	□□□□□ -0.23
CLN3-238	ENST00000569430	SRGAP3	O43295	1099 aa		13.61	□□□□□ -0.23
CLN3-238	ENST00000569430	TPM4	P67936	248 aa		13.61	□□□□□ -0.23
CLN3-238	ENST00000569430	SDF4	Q9BRK5	362 aa		13.61	□□□□□ -0.23
CLN3-238	ENST00000569430	CCDC94	Q9BW85	323 aa	Predicted RBP	13.61	□□□□□ -0.23
CLN3-238	ENST00000569430	GADD45B	O75293	160 aa	Predicted RBP	13.6	□□□□□ -0.23
CLN3-238	ENST00000569430	STX6	O43752	255 aa		13.6	□□□□□ -0.23
CLN3-238	ENST00000569430	MAP3K11	Q16584	847 aa		13.6	□□□□□ -0.23
CLN3-238	ENST00000569430	CCDC30	Q5VVM6	783 aa		13.6	□□□□□ -0.23
CLN3-238	ENST00000569430	PDRG1	Q9NUG6	133 aa		13.6	□□□□□ -0.23
CLN3-238	ENST00000569430	CCDC73	Q6ZRK6	1079 aa		13.6	□□□□□ -0.23
CLN3-238	ENST00000569430	EIF2AK4	Q9P2K8	1649 aa	Known RBP	13.59	□□□□□ -0.23
CLN3-238	ENST00000569430	RNF20	Q5VTR2	975 aa		13.59	□□□□□ -0.23
CLN3-238	ENST00000569430	TNNT1	P13805	278 aa		13.59	□□□□□ -0.23
CLN3-238	ENST00000569430	TRERF1	Q96PN7	1200 aa		13.59	□□□□□ -0.23
CLN3-238	ENST00000569430	PRPF40B	Q6NWY9	871 aa	Known RBP	13.59	□□□□□ -0.23
CLN3-238	ENST00000569430	SPATA32	Q96LK8	384 aa		13.59	□□□□□ -0.23
CLN3-238	ENST00000569430	ESYT1	Q9BSJ8	1104 aa		13.59	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms