RNA–Protein interactions for RNA: ENST00000568569.1

GTF3C1-209, Transcript of general transcription factor IIIC subunit 1, humanhuman

TSL 5

Gene GTF3C1, Length 540 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-209ENST00000568569 NSD2O96028 1365 aa16.74■□□□□ 0.27
GTF3C1-209ENST00000568569 GRIN3BO60391 1043 aa16.73■□□□□ 0.27
GTF3C1-209ENST00000568569 PUS7Q96PZ0 661 aaKnown RBP16.73■□□□□ 0.27
GTF3C1-209ENST00000568569 ZCRB1Q8TBF4 217 aaKnown RBP16.72■□□□□ 0.27
GTF3C1-209ENST00000568569 CCNL1Q9UK58 526 aaPredicted RBP16.72■□□□□ 0.27
GTF3C1-209ENST00000568569 FAM208AQ9UK61 1670 aaKnown RBP16.72■□□□□ 0.27
GTF3C1-209ENST00000568569 COL24A1Q17RW2 1714 aa16.71■□□□□ 0.27
GTF3C1-209ENST00000568569 HOXC9P31274 260 aa16.71■□□□□ 0.27
GTF3C1-209ENST00000568569 COG3Q96JB2 828 aa16.71■□□□□ 0.27
GTF3C1-209ENST00000568569 MAP3K19Q56UN5 1328 aa16.7■□□□□ 0.26
GTF3C1-209ENST00000568569 USP47Q96K76 1375 aa16.7■□□□□ 0.26
GTF3C1-209ENST00000568569 MSH5O43196 834 aa16.7■□□□□ 0.26
GTF3C1-209ENST00000568569 YBX3P16989 372 aaKnown RBP eCLIP16.7■□□□□ 0.26
GTF3C1-209ENST00000568569 AMPHP49418 695 aa16.7■□□□□ 0.26
GTF3C1-209ENST00000568569 COL23A1Q86Y22 540 aaPredicted RBP16.69■□□□□ 0.26
GTF3C1-209ENST00000568569 SHANK3Q9BYB0 1731 aa16.69■□□□□ 0.26
GTF3C1-209ENST00000568569 MEGF6O75095 1541 aa16.69■□□□□ 0.26
GTF3C1-209ENST00000568569 IFFO2Q5TF58 517 aa16.68■□□□□ 0.26
GTF3C1-209ENST00000568569 DOT1LQ8TEK3 1739 aa16.67■□□□□ 0.26
GTF3C1-209ENST00000568569 HMGB2P26583 209 aaKnown RBP16.67■□□□□ 0.26
GTF3C1-209ENST00000568569 TUBGCP6Q96RT7 1819 aa16.67■□□□□ 0.26
GTF3C1-209ENST00000568569 LY75O60449 1722 aa16.67■□□□□ 0.26
GTF3C1-209ENST00000568569 CGNL1Q0VF96 1302 aa16.67■□□□□ 0.26
GTF3C1-209ENST00000568569 RTL1A6NKG5 1358 aa16.66■□□□□ 0.26
GTF3C1-209ENST00000568569 MSL1Q68DK7 614 aa16.66■□□□□ 0.26
GTF3C1-209ENST00000568569 RAPGEF4Q8WZA2 1011 aa16.65■□□□□ 0.26
GTF3C1-209ENST00000568569 CD2APQ9Y5K6 639 aa16.65■□□□□ 0.26
GTF3C1-209ENST00000568569 ATP10DQ9P241 1426 aa16.64■□□□□ 0.25
GTF3C1-209ENST00000568569 FBLN1P23142 703 aa16.64■□□□□ 0.25
GTF3C1-209ENST00000568569 FLAD1Q8NFF5 587 aa16.64■□□□□ 0.25
GTF3C1-209ENST00000568569 SMG6Q86US8 1419 aaKnown RBP16.63■□□□□ 0.25
GTF3C1-209ENST00000568569 NBPF6Q5VWK0 638 aa16.63■□□□□ 0.25
GTF3C1-209ENST00000568569 NBPF4Q96M43 638 aa16.63■□□□□ 0.25
GTF3C1-209ENST00000568569 SLC24A1O60721 1099 aa16.62■□□□□ 0.25
GTF3C1-209ENST00000568569 TESK2Q96S53 571 aa16.62■□□□□ 0.25
GTF3C1-209ENST00000568569 GPBP1L1Q9HC44 474 aaPredicted RBP16.62■□□□□ 0.25
GTF3C1-209ENST00000568569 TATP17735 454 aaPredicted RBP16.61■□□□□ 0.25
GTF3C1-209ENST00000568569 RRS1Q15050 365 aaKnown RBP16.61■□□□□ 0.25
GTF3C1-209ENST00000568569 USHBP1Q8N6Y0 703 aa16.61■□□□□ 0.25
GTF3C1-209ENST00000568569 PCDH11XQ9BZA7 1347 aa16.61■□□□□ 0.25
GTF3C1-209ENST00000568569 PCDH11YQ9BZA8 1340 aa16.61■□□□□ 0.25
GTF3C1-209ENST00000568569 PALLDQ8WX93 1383 aa16.61■□□□□ 0.25
GTF3C1-209ENST00000568569 TONSLQ96HA7 1378 aa16.6■□□□□ 0.25
GTF3C1-209ENST00000568569 ST20-MTHFSA0A0A6YYL1 179 aa16.59■□□□□ 0.25
GTF3C1-209ENST00000568569 ADCY9O60503 1353 aa16.59■□□□□ 0.25
GTF3C1-209ENST00000568569 MPRIPQ6WCQ1 1025 aa16.58■□□□□ 0.24
GTF3C1-209ENST00000568569 FYB1O15117 783 aa16.57■□□□□ 0.24
GTF3C1-209ENST00000568569 SMARCC1Q92922 1105 aaPredicted RBP16.57■□□□□ 0.24
GTF3C1-209ENST00000568569 AK7Q96M32 723 aa16.57■□□□□ 0.24
GTF3C1-209ENST00000568569 GGNBP2Q9H3C7 697 aa16.57■□□□□ 0.24
GTF3C1-209ENST00000568569 C5P01031 1676 aa16.56■□□□□ 0.24
GTF3C1-209ENST00000568569 NSD3Q9BZ95 1437 aa16.56■□□□□ 0.24
GTF3C1-209ENST00000568569 INSRP06213 1382 aa16.56■□□□□ 0.24
GTF3C1-209ENST00000568569 HSPA6P17066 643 aa16.56■□□□□ 0.24
GTF3C1-209ENST00000568569 RGPD2P0DJD1 1756 aa16.56■□□□□ 0.24
GTF3C1-209ENST00000568569 FLT4P35916 1363 aa16.55■□□□□ 0.24
GTF3C1-209ENST00000568569 KIF24Q5T7B8 1368 aa16.55■□□□□ 0.24
GTF3C1-209ENST00000568569 IGSF1Q8N6C5 1336 aa16.55■□□□□ 0.24
GTF3C1-209ENST00000568569 HSP90AB2PQ58FF8 381 aa16.55■□□□□ 0.24
GTF3C1-209ENST00000568569 ZNF526Q8TF50 670 aaPredicted RBP16.55■□□□□ 0.24
GTF3C1-209ENST00000568569 CYP27B1O15528 508 aa16.54■□□□□ 0.24
GTF3C1-209ENST00000568569 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.53■□□□□ 0.24
GTF3C1-209ENST00000568569 PHF14O94880 888 aa16.53■□□□□ 0.24
GTF3C1-209ENST00000568569 AMIGO3Q86WK7 504 aa16.53■□□□□ 0.24
GTF3C1-209ENST00000568569 SSFA2P28290 1259 aa16.52■□□□□ 0.24
GTF3C1-209ENST00000568569 C4BP0C0L5 1744 aa16.52■□□□□ 0.24
GTF3C1-209ENST00000568569 TMF1P82094 1093 aa16.51■□□□□ 0.23
GTF3C1-209ENST00000568569 WWC3Q9ULE0 1092 aa16.51■□□□□ 0.23
GTF3C1-209ENST00000568569 LOC102724428A0A0B4J2F2 783 aa16.5■□□□□ 0.23
GTF3C1-209ENST00000568569 SIK1P57059 783 aa16.5■□□□□ 0.23
GTF3C1-209ENST00000568569 PIGBQ92521 554 aa16.5■□□□□ 0.23
GTF3C1-209ENST00000568569 NKX1-1Q15270 411 aaPredicted RBP16.49■□□□□ 0.23
GTF3C1-209ENST00000568569 SMIM5Q71RC9 77 aa16.49■□□□□ 0.23
GTF3C1-209ENST00000568569 TAF1LQ8IZX4 1826 aa16.49■□□□□ 0.23
GTF3C1-209ENST00000568569 LINC00116Q8NCU8 138 aa16.48■□□□□ 0.23
GTF3C1-209ENST00000568569 SPG7Q9UQ90 795 aa16.48■□□□□ 0.23
GTF3C1-209ENST00000568569 TOGARAM1Q9Y4F4 1720 aa16.48■□□□□ 0.23
GTF3C1-209ENST00000568569 NCAPD2Q15021 1401 aa16.47■□□□□ 0.23
GTF3C1-209ENST00000568569 KIF3CO14782 793 aa16.47■□□□□ 0.23
GTF3C1-209ENST00000568569 TMOD3Q9NYL9 352 aa16.47■□□□□ 0.23
GTF3C1-209ENST00000568569 GNPATO15228 680 aa16.46■□□□□ 0.23
GTF3C1-209ENST00000568569 CDCA8Q53HL2 280 aa16.46■□□□□ 0.23
GTF3C1-209ENST00000568569 EMILIN1Q9Y6C2 1016 aa16.46■□□□□ 0.23
GTF3C1-209ENST00000568569 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.45■□□□□ 0.222e-10■■■□□ 18.4
GTF3C1-209ENST00000568569 UBR3Q6ZT12 1888 aa16.45■□□□□ 0.22
GTF3C1-209ENST00000568569 PKD1L3Q7Z443 1732 aa16.45■□□□□ 0.22
GTF3C1-209ENST00000568569 PPM1GO15355 546 aaPredicted RBP16.44■□□□□ 0.22
GTF3C1-209ENST00000568569 MMP10P09238 476 aa16.44■□□□□ 0.22
GTF3C1-209ENST00000568569 ATP6V1AP38606 617 aa16.44■□□□□ 0.22
GTF3C1-209ENST00000568569 ITPK1Q13572 414 aa16.44■□□□□ 0.22
GTF3C1-209ENST00000568569 ASAP1Q9ULH1 1129 aa16.44■□□□□ 0.22
GTF3C1-209ENST00000568569 CICQ96RK0 1608 aaPredicted RBP16.43■□□□□ 0.22
GTF3C1-209ENST00000568569 PXDNLA1KZ92 1463 aa16.42■□□□□ 0.22
GTF3C1-209ENST00000568569 APLP1P51693 650 aa16.42■□□□□ 0.22
GTF3C1-209ENST00000568569 ITGB4P16144 1822 aa16.42■□□□□ 0.22
GTF3C1-209ENST00000568569 WASHC2AQ641Q2 1341 aa16.42■□□□□ 0.22
GTF3C1-209ENST00000568569 MAP2P11137 1827 aaKnown RBP16.41■□□□□ 0.22
GTF3C1-209ENST00000568569 KIF20BQ96Q89 1820 aa16.41■□□□□ 0.22
GTF3C1-209ENST00000568569 PHKG2P15735 406 aa16.41■□□□□ 0.22
GTF3C1-209ENST00000568569 TGFB2P61812 414 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 1702.7 ms